Wall clock time and date at job start Wed Apr 1 2020 04:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00199 * 2 1 4 4 H 1.48494 * 109.47316 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47073 * 300.00436 * 3 2 1 6 6 H 1.48507 * 109.47045 * 59.99786 * 3 2 1 7 7 C 1.37883 * 120.00321 * 180.02562 * 2 1 3 8 8 H 1.07988 * 120.00100 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99374 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.46846 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.47247 * 179.97438 * 10 9 7 12 12 O 1.42097 * 110.54301 * 68.37265 * 11 10 9 13 13 O 1.42099 * 110.54210 * 291.62666 * 11 10 9 14 14 N 1.65593 * 104.45012 * 179.97438 * 11 10 9 15 15 C 1.46506 * 119.99721 * 65.00487 * 14 11 10 16 16 C 1.53002 * 109.46916 * 164.99844 * 15 14 11 17 17 H 1.08990 * 109.47355 * 304.99361 * 16 15 14 18 18 O 1.42905 * 109.47166 * 64.99891 * 16 15 14 19 19 C 1.53000 * 109.46776 * 184.99371 * 16 15 14 20 20 O 1.42903 * 109.46726 * 174.99924 * 19 16 15 21 21 C 1.35904 * 116.99628 * 180.02562 * 20 19 16 22 22 C 1.38771 * 120.04254 * 359.72712 * 21 20 19 23 23 C 1.38137 * 119.99170 * 179.74512 * 22 21 20 24 24 C 1.38249 * 120.07851 * 0.52965 * 23 22 21 25 25 C 1.38476 * 120.08973 * 359.74253 * 24 23 22 26 26 F 1.35096 * 120.00395 * 179.97438 * 25 24 23 27 27 C 1.38388 * 119.99948 * 359.97438 * 25 24 23 28 28 H 0.97001 * 119.99925 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47294 * 59.99927 * 9 7 2 30 30 H 1.08999 * 109.47194 * 299.99907 * 9 7 2 31 31 H 1.08997 * 109.46571 * 59.99991 * 10 9 7 32 32 H 1.09000 * 109.46582 * 299.99745 * 10 9 7 33 33 H 0.96996 * 120.00519 * 244.99571 * 14 11 10 34 34 H 1.08993 * 109.47191 * 44.99569 * 15 14 11 35 35 H 1.09001 * 109.46593 * 284.99203 * 15 14 11 36 36 H 0.96702 * 113.99974 * 59.99593 * 18 16 15 37 37 H 1.09002 * 109.47398 * 295.00168 * 19 16 15 38 38 H 1.09001 * 109.47194 * 55.00349 * 19 16 15 39 39 H 1.07997 * 120.00380 * 359.97438 * 22 21 20 40 40 H 1.07994 * 119.95751 * 180.27410 * 23 22 21 41 41 H 1.07999 * 119.95718 * 179.76792 * 24 23 22 42 42 H 1.08004 * 120.03532 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3384 -5.2330 0.0002 12 8 0.6639 -5.4200 -1.2364 13 8 0.6648 -5.4193 1.2375 14 7 2.5205 -6.3927 -0.0006 15 6 3.4197 -6.5228 1.1488 16 6 4.1506 -7.8649 1.0750 17 1 3.4219 -8.6719 0.9999 18 8 5.0005 -7.8819 -0.0737 19 6 4.9948 -8.0558 2.3367 20 8 5.5850 -9.3571 2.3224 21 6 6.3712 -9.6896 3.3799 22 6 6.5749 -8.7794 4.4075 23 6 7.3700 -9.1203 5.4844 24 6 7.9723 -10.3637 5.5349 25 6 7.7759 -11.2724 4.5086 26 9 8.3658 -12.4867 4.5594 27 6 6.9754 -10.9367 3.4309 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5566 -0.8903 30 1 0.6247 -2.5570 0.8897 31 1 2.8719 -3.6043 0.8894 32 1 2.8719 -3.6043 -0.8906 33 1 2.6176 -6.9858 -0.7618 34 1 2.8402 -6.4748 2.0707 35 1 4.1474 -5.7114 1.1343 36 1 5.6751 -7.1891 -0.0742 37 1 5.7804 -7.3007 2.3660 38 1 4.3603 -7.9543 3.2172 39 1 6.1089 -7.8060 4.3670 40 1 7.5245 -8.4132 6.2859 41 1 8.5966 -10.6268 6.3760 42 1 6.8215 -11.6451 2.6303 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751175270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:49 Heat of formation + Delta-G solvation = -219.846254 kcal Electronic energy + Delta-G solvation = -27080.018808 eV Core-core repulsion = 22679.663485 eV Total energy + Delta-G solvation = -4400.355323 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.108 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.98171 -41.19398 -39.20775 -38.13154 -37.80050 -36.97928 -35.86410 -35.38564 -33.09239 -32.24791 -31.24576 -30.44185 -27.56475 -26.65318 -24.05554 -23.59157 -23.38953 -22.53818 -20.26325 -19.65507 -19.06956 -18.39540 -18.18874 -17.66230 -17.48272 -17.15494 -16.98850 -16.89982 -16.70690 -16.61388 -16.50160 -15.91534 -15.56106 -15.29350 -15.01927 -14.74352 -14.50868 -14.45690 -13.96240 -13.70364 -13.67305 -13.23468 -13.15543 -13.07848 -13.01008 -12.93773 -12.87985 -12.74439 -12.30336 -12.21765 -12.08603 -11.93041 -11.80615 -11.71168 -11.18726 -11.08553 -10.63873 -10.36789 -9.92298 -9.32226 -8.24356 -6.37851 -0.64974 0.10133 0.27920 1.42533 1.43130 1.55956 1.73843 2.07710 2.39318 2.58197 2.86338 3.09617 3.26920 3.33870 3.45043 3.64468 3.72076 3.83598 3.95722 4.01309 4.05814 4.11690 4.18815 4.25158 4.34620 4.39938 4.46364 4.54429 4.80855 4.84153 4.99668 5.01409 5.08578 5.21439 5.31457 5.32794 5.34345 5.70320 5.71022 6.08113 6.11345 6.31604 6.76881 6.83325 7.32435 8.87910 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.015726 B = 0.001905 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.014330 B =14692.281482 C =15849.652071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.006 4.006 3 Si 0.973 3.027 4 H -0.254 1.254 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.079 0.921 9 C 0.017 3.983 10 C -0.585 4.585 11 S 2.624 3.376 12 O -1.003 7.003 13 O -0.996 6.996 14 N -1.106 6.106 15 C 0.076 3.924 16 C 0.114 3.886 17 H 0.106 0.894 18 O -0.564 6.564 19 C 0.021 3.979 20 O -0.318 6.318 21 C 0.148 3.852 22 C -0.219 4.219 23 C -0.046 4.046 24 C -0.196 4.196 25 C 0.119 3.881 26 F -0.145 7.145 27 C -0.210 4.210 28 H 0.266 0.734 29 H 0.004 0.996 30 H 0.008 0.992 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.425 0.575 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.392 0.608 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.160 0.840 40 H 0.167 0.833 41 H 0.153 0.847 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.947 -18.600 10.358 28.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.205 4.205 3 Si 0.797 3.203 4 H -0.177 1.177 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.574 4.574 8 H 0.097 0.903 9 C -0.022 4.022 10 C -0.718 4.718 11 S 2.721 3.279 12 O -0.993 6.993 13 O -0.986 6.986 14 N -0.868 5.868 15 C -0.050 4.050 16 C 0.053 3.947 17 H 0.124 0.876 18 O -0.371 6.371 19 C -0.054 4.054 20 O -0.231 6.231 21 C 0.102 3.898 22 C -0.238 4.238 23 C -0.064 4.064 24 C -0.215 4.215 25 C 0.100 3.900 26 F -0.124 7.124 27 C -0.229 4.229 28 H 0.075 0.925 29 H 0.022 0.978 30 H 0.027 0.973 31 H 0.167 0.833 32 H 0.161 0.839 33 H 0.262 0.738 34 H 0.115 0.885 35 H 0.124 0.876 36 H 0.243 0.757 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.177 0.823 40 H 0.185 0.815 41 H 0.171 0.829 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 17.437 -19.246 10.181 27.895 hybrid contribution 0.779 1.139 -0.277 1.407 sum 18.216 -18.107 9.905 27.528 Atomic orbital electron populations 1.70110 1.08083 1.28158 1.51110 1.26124 0.95835 1.03912 0.94588 0.85276 0.79285 0.78131 0.77602 1.17698 1.20793 1.20490 1.21564 0.94069 0.90704 1.51052 0.90337 1.18846 0.93754 0.93221 0.96385 1.30317 1.12703 1.16076 1.12657 1.04342 0.74563 0.76425 0.72561 1.93507 1.73137 1.85845 1.46848 1.93500 1.72678 1.85485 1.46952 1.55191 1.52067 1.50984 1.28521 1.22156 0.94422 0.99156 0.89314 1.21939 0.91443 0.97019 0.84342 0.87589 1.86648 1.48979 1.58725 1.42791 1.23778 0.98383 0.83090 1.00192 1.86099 1.60718 1.35505 1.40827 1.18769 0.90589 0.93070 0.87360 1.21703 1.05126 1.01449 0.95481 1.21211 0.92476 0.95281 0.97444 1.21366 1.05492 0.94778 0.99824 1.17532 0.95211 0.81279 0.96012 1.91490 1.82074 1.42286 1.96513 1.20362 1.03674 0.97826 1.01042 0.92516 0.97797 0.97327 0.83316 0.83877 0.73807 0.88532 0.87633 0.75745 0.88242 0.88641 0.82298 0.81533 0.82905 0.84506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.68 13.29 21.45 0.28 -55.39 16 2 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 3 Si 0.97 41.88 29.54 68.60 2.03 43.91 16 4 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 6 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.53 -28.27 9.11 25.60 0.23 -28.03 16 8 H 0.08 3.77 7.74 -2.92 -0.02 3.75 16 9 C 0.02 0.83 4.98 29.85 0.15 0.98 16 10 C -0.59 -19.51 6.01 71.99 0.43 -19.08 16 11 S 2.62 83.79 5.46 -56.49 -0.31 83.48 16 12 O -1.00 -40.08 18.08 -127.65 -2.31 -42.39 16 13 O -1.00 -37.79 17.50 -127.65 -2.23 -40.02 16 14 N -1.11 -22.56 5.85 -187.48 -1.10 -23.66 16 15 C 0.08 1.03 5.77 86.38 0.50 1.52 16 16 C 0.11 1.42 3.34 30.60 0.10 1.52 16 17 H 0.11 1.60 8.14 -2.39 -0.02 1.59 16 18 O -0.56 -7.87 13.11 -144.34 -1.89 -9.77 16 19 C 0.02 0.20 4.37 71.98 0.31 0.52 16 20 O -0.32 -5.13 10.10 -87.83 -0.89 -6.01 16 21 C 0.15 2.30 6.68 22.50 0.15 2.45 16 22 C -0.22 -2.33 9.04 22.37 0.20 -2.13 16 23 C -0.05 -0.42 10.04 22.25 0.22 -0.20 16 24 C -0.20 -2.33 10.02 22.33 0.22 -2.10 16 25 C 0.12 1.96 7.30 22.36 0.16 2.13 16 26 F -0.14 -2.69 17.27 44.97 0.78 -1.92 16 27 C -0.21 -3.63 9.97 22.41 0.22 -3.41 16 28 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 29 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.15 3.96 8.14 -2.39 -0.02 3.94 16 32 H 0.14 4.15 8.14 -2.39 -0.02 4.13 16 33 H 0.43 8.00 8.47 -96.75 -0.82 7.18 16 34 H 0.10 1.31 7.69 -2.39 -0.02 1.29 16 35 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.39 2.52 9.05 -74.06 -0.67 1.85 16 37 H 0.10 0.45 7.65 -2.39 -0.02 0.43 16 38 H 0.10 0.64 7.67 -2.39 -0.02 0.62 16 39 H 0.16 0.89 6.30 -2.91 -0.02 0.87 16 40 H 0.17 0.48 8.06 -2.91 -0.02 0.46 16 41 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 42 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -81.46 379.50 -2.68 -84.14 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -0.42 Total: 13.35 kcal Atomic # 6 Polarization: -49.10 SS G_CDS: 3.38 Total: -45.72 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -0.81 Total: -79.05 kcal Atomic # 8 Polarization: -90.87 SS G_CDS: -7.32 Total: -98.19 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.78 Total: -1.92 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 83.79 SS G_CDS: -0.31 Total: 83.48 kcal Total: -81.46 -2.68 -84.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751175270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.706 kcal (2) G-P(sol) polarization free energy of solvation -81.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds