Wall clock time and date at job start Wed Apr 1 2020 04:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 119.99978 * 2 1 4 4 H 1.48506 * 109.47404 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47143 * 300.00352 * 3 2 1 6 6 H 1.48499 * 109.47372 * 60.00399 * 3 2 1 7 7 C 1.38952 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99740 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00185 * 359.97438 * 7 2 1 10 10 C 1.34767 * 119.99833 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00557 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99835 * 180.02562 * 10 9 7 13 13 N 1.46504 * 109.47443 * 179.97438 * 12 10 9 14 14 C 1.34773 * 120.00249 * 179.97438 * 13 12 10 15 15 O 1.21287 * 119.99989 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99985 * 179.97438 * 14 13 12 17 17 N 1.46504 * 109.47181 * 179.97438 * 16 14 13 18 18 N 1.39876 * 125.46007 * 270.02764 * 17 16 14 19 19 C 1.30242 * 110.08214 * 179.97438 * 18 17 16 20 20 C 1.45926 * 107.78648 * 0.02562 * 19 18 17 21 21 C 1.39945 * 134.02618 * 179.97438 * 20 19 18 22 22 C 1.36468 * 119.63415 * 180.02562 * 21 20 19 23 23 C 1.38963 * 120.62721 * 359.93222 * 22 21 20 24 24 N 1.48004 * 119.59148 * 180.02562 * 23 22 21 25 25 O 1.21804 * 119.99800 * 180.02562 * 24 23 22 26 26 O 1.21800 * 120.00200 * 0.02562 * 24 23 22 27 27 C 1.36591 * 120.81457 * 0.03704 * 23 22 21 28 28 C 1.37031 * 125.46160 * 89.99772 * 17 16 14 29 29 H 0.96997 * 120.00227 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99733 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.47494 * 59.99109 * 12 10 9 32 32 H 1.09006 * 109.46834 * 299.99289 * 12 10 9 33 33 H 0.96998 * 119.99736 * 359.97438 * 13 12 10 34 34 H 1.09005 * 109.47182 * 60.00459 * 16 14 13 35 35 H 1.08994 * 109.47563 * 299.99797 * 16 14 13 36 36 H 1.08006 * 126.10211 * 180.25918 * 19 18 17 37 37 H 1.08001 * 120.18364 * 359.97438 * 21 20 19 38 38 H 1.07997 * 119.68138 * 179.97438 * 22 21 20 39 39 H 1.08004 * 120.07039 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1958 -5.9765 -0.0016 14 6 1.7466 -7.2471 -0.0017 15 8 0.5542 -7.4688 -0.0008 16 6 2.7259 -8.3925 -0.0028 17 7 1.9934 -9.6613 -0.0020 18 7 1.5885 -10.3638 1.1378 19 6 0.9599 -11.4512 0.7931 20 6 0.9285 -11.5048 -0.6649 21 6 0.4048 -12.4111 -1.5937 22 6 0.5462 -12.1664 -2.9288 23 6 1.2036 -11.0258 -3.3738 24 7 1.3433 -10.7828 -4.8270 25 8 1.9185 -9.7857 -5.2252 26 8 0.8832 -11.5799 -5.6248 27 6 1.7225 -10.1262 -2.4865 28 6 1.5947 -10.3498 -1.1177 29 1 -0.4850 0.8400 0.0004 30 1 0.3534 -2.3907 -0.0005 31 1 0.6174 -4.9205 -0.8913 32 1 0.6169 -4.9209 0.8887 33 1 3.1495 -5.7992 -0.0019 34 1 3.3532 -8.3351 0.8868 35 1 3.3519 -8.3346 -0.8931 36 1 0.5344 -12.1808 1.4662 37 1 -0.1076 -13.2997 -1.2559 38 1 0.1428 -12.8655 -3.6463 39 1 2.2315 -9.2439 -2.8456 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804821329.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:50 Heat of formation + Delta-G solvation = 25.329452 kcal Electronic energy + Delta-G solvation = -28620.288311 eV Core-core repulsion = 24147.333366 eV Total energy + Delta-G solvation = -4472.954945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.56300 -41.86599 -39.80353 -38.31034 -37.86656 -36.80693 -34.67118 -34.16286 -33.85705 -31.67887 -31.47099 -31.14170 -28.82816 -26.92853 -26.71312 -24.55268 -23.58486 -22.55029 -21.87700 -20.57864 -19.80043 -19.36637 -18.93048 -18.27461 -17.79592 -17.72046 -17.66174 -17.08424 -15.92377 -15.84252 -15.70619 -15.21537 -15.21155 -14.90585 -14.53028 -14.47376 -14.21994 -13.99631 -13.50600 -13.49428 -12.82414 -12.71566 -12.34270 -12.19482 -12.01563 -11.78101 -11.70876 -11.48533 -11.41293 -11.35850 -11.20308 -11.02593 -10.47015 -10.40063 -10.13504 -9.73094 -9.66833 -9.09269 -8.76559 -8.63863 -8.19285 -6.59441 -4.01908 -0.61922 0.51200 0.92787 1.00964 1.63338 1.88091 2.38423 2.87910 3.04699 3.06933 3.18459 3.25046 3.62854 3.68274 3.82975 3.96488 4.03804 4.17517 4.30495 4.49074 4.52724 4.63069 4.73488 4.74676 4.82915 5.06959 5.08854 5.27567 5.42946 5.64245 5.72311 5.79004 5.84017 5.92599 6.07895 6.19428 6.38087 6.94560 7.37995 7.38740 7.44650 7.82386 8.07099 8.34988 8.96079 9.29400 9.76267 10.57304 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014841 B = 0.002095 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.207711 B =13363.153159 C =14590.850367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.306 4.306 8 H 0.107 0.893 9 N -0.546 5.546 10 C 0.426 3.574 11 O -0.598 6.598 12 C 0.110 3.890 13 N -0.699 5.699 14 C 0.491 3.509 15 O -0.532 6.532 16 C 0.117 3.883 17 N -0.374 5.374 18 N -0.214 5.214 19 C 0.075 3.925 20 C -0.140 4.140 21 C -0.028 4.028 22 C -0.116 4.116 23 C 0.006 3.994 24 N 0.027 4.973 25 O -0.157 6.157 26 O -0.152 6.152 27 C -0.060 4.060 28 C 0.133 3.867 29 H 0.275 0.725 30 H 0.396 0.604 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.414 0.586 34 H 0.134 0.866 35 H 0.127 0.873 36 H 0.208 0.792 37 H 0.153 0.847 38 H 0.156 0.844 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.337 -25.758 -0.656 25.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.435 4.435 8 H 0.125 0.875 9 N -0.180 5.180 10 C 0.211 3.789 11 O -0.485 6.485 12 C -0.018 4.018 13 N -0.354 5.354 14 C 0.274 3.726 15 O -0.408 6.408 16 C -0.009 4.009 17 N -0.161 5.161 18 N -0.026 5.026 19 C -0.123 4.123 20 C -0.148 4.148 21 C -0.049 4.049 22 C -0.137 4.137 23 C -0.079 4.079 24 N 0.547 4.453 25 O -0.372 6.372 26 O -0.369 6.369 27 C -0.083 4.083 28 C 0.017 3.983 29 H 0.085 0.915 30 H 0.230 0.770 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.252 0.748 34 H 0.152 0.848 35 H 0.145 0.855 36 H 0.225 0.775 37 H 0.171 0.829 38 H 0.174 0.826 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.597 -24.920 1.057 24.994 hybrid contribution -0.099 0.835 -0.988 1.297 sum 1.498 -24.085 0.070 24.132 Atomic orbital electron populations 1.69616 1.06070 1.28594 1.48994 1.25354 0.95682 1.00054 0.96601 0.85742 0.79683 0.80673 0.77908 1.19072 1.20517 1.20551 1.19787 0.93511 0.81889 1.48359 0.87526 1.41803 1.09527 1.04513 1.62194 1.19642 0.88271 0.84885 0.86069 1.90499 1.13598 1.86741 1.57649 1.21004 0.91722 0.85629 1.03439 1.45601 1.11994 1.04261 1.73494 1.20664 0.89920 0.84165 0.77843 1.90766 1.16227 1.84550 1.49287 1.21568 0.92979 0.78637 1.07669 1.47766 1.48781 1.18777 1.00733 1.76758 1.12489 1.05297 1.08008 1.25237 0.98614 0.96115 0.92302 1.20239 1.03785 0.96450 0.94355 1.20291 0.96263 0.98206 0.90149 1.20410 1.00113 0.96209 0.96980 1.20433 1.07940 0.99746 0.79802 1.43568 0.98452 0.99913 1.03339 1.94586 1.41509 1.17910 1.83239 1.94534 1.49293 1.42075 1.51024 1.19494 0.99769 0.99937 0.89074 1.18218 0.98178 0.93392 0.88514 0.91520 0.77018 0.89662 0.89666 0.74803 0.84838 0.85547 0.77507 0.82895 0.82624 0.82661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.48 13.05 55.50 0.72 -22.76 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.17 29.55 -169.99 -5.02 15.14 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.31 -8.13 9.68 -14.93 -0.14 -8.27 16 8 H 0.11 2.95 7.16 -52.49 -0.38 2.57 16 9 N -0.55 -13.16 5.29 -10.96 -0.06 -13.22 16 10 C 0.43 9.32 7.85 -10.99 -0.09 9.23 16 11 O -0.60 -14.55 15.24 5.55 0.08 -14.46 16 12 C 0.11 1.89 6.15 -5.19 -0.03 1.86 16 13 N -0.70 -10.18 5.53 -61.47 -0.34 -10.52 16 14 C 0.49 6.74 7.90 -10.99 -0.09 6.66 16 15 O -0.53 -9.40 16.43 5.55 0.09 -9.31 16 16 C 0.12 1.10 6.85 -5.19 -0.04 1.06 16 17 N -0.37 -4.07 3.14 -59.88 -0.19 -4.26 16 18 N -0.21 -2.30 12.40 31.87 0.40 -1.91 16 19 C 0.07 0.57 12.28 -15.15 -0.19 0.39 16 20 C -0.14 -1.18 6.37 -105.21 -0.67 -1.85 16 21 C -0.03 -0.17 10.07 -39.58 -0.40 -0.57 16 22 C -0.12 -0.89 9.47 -39.95 -0.38 -1.26 16 23 C 0.01 0.06 6.81 -80.28 -0.55 -0.49 16 24 N 0.03 0.33 4.45 33.80 0.15 0.48 16 25 O -0.16 -2.13 18.39 -29.46 -0.54 -2.67 16 26 O -0.15 -1.89 18.41 -29.46 -0.54 -2.43 16 27 C -0.06 -0.61 9.46 -39.79 -0.38 -0.99 16 28 C 0.13 1.39 6.87 -84.18 -0.58 0.81 16 29 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.40 9.21 7.90 -40.82 -0.32 8.89 16 31 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.41 5.65 7.44 -40.82 -0.30 5.34 16 34 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.21 0.65 8.06 -52.48 -0.42 0.23 16 37 H 0.15 0.36 8.06 -52.49 -0.42 -0.06 16 38 H 0.16 0.91 7.57 -52.49 -0.40 0.51 16 39 H 0.16 1.49 7.55 -52.48 -0.40 1.10 16 LS Contribution 363.06 15.07 5.47 5.47 Total: -1.00 -34.91 363.06 -6.86 -41.76 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -3.47 Total: 11.53 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: -3.62 Total: 7.15 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: 0.68 Total: -52.18 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.91 Total: -28.88 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.91 -6.86 -41.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804821329.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.094 kcal (2) G-P(sol) polarization free energy of solvation -34.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds