Wall clock time and date at job start Wed Apr 1 2020 04:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37861 * 118.95355 * 2 1 4 4 C 1.47306 * 118.98062 * 359.72945 * 3 2 1 5 5 O 1.21517 * 120.00171 * 354.57582 * 4 3 2 6 6 O 1.34813 * 120.00236 * 174.58357 * 4 3 2 7 7 C 1.45199 * 117.00297 * 179.97438 * 6 4 3 8 8 C 1.52994 * 109.47112 * 179.97438 * 7 6 4 9 9 C 1.53003 * 109.47006 * 179.97438 * 8 7 6 10 10 S 1.81005 * 109.46857 * 179.97438 * 9 8 7 11 11 C 1.76203 * 99.99547 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00079 * 0.02562 * 11 10 9 13 13 C 1.38800 * 119.99563 * 180.02562 * 11 10 9 14 14 N 1.31634 * 119.99735 * 180.02562 * 13 11 10 15 15 Si 1.86792 * 120.00256 * 359.97438 * 13 11 10 16 16 H 1.48495 * 109.47464 * 90.00161 * 15 13 11 17 17 H 1.48504 * 109.47045 * 210.00316 * 15 13 11 18 18 H 1.48503 * 109.47410 * 329.99934 * 15 13 11 19 19 C 1.35685 * 122.03985 * 180.02562 * 3 2 1 20 20 C 1.46279 * 119.40217 * 359.97438 * 19 3 2 21 21 C 1.39612 * 121.77852 * 179.97438 * 20 19 3 22 22 C 1.37795 * 119.54345 * 180.02562 * 21 20 19 23 23 C 1.38822 * 120.69657 * 0.04072 * 22 21 20 24 24 C 1.37905 * 120.73277 * 0.02562 * 23 22 21 25 25 C 1.39274 * 119.60215 * 359.96797 * 24 23 22 26 26 C 1.34735 * 118.96103 * 180.02562 * 2 1 3 27 27 O 1.21739 * 120.28009 * 359.97438 * 26 2 1 28 28 H 1.08992 * 109.47769 * 64.74324 * 1 2 3 29 29 H 1.09009 * 109.46525 * 184.74444 * 1 2 3 30 30 H 1.09004 * 109.47126 * 304.73743 * 1 2 3 31 31 H 1.09000 * 109.46593 * 299.99795 * 7 6 4 32 32 H 1.09000 * 109.46661 * 59.99652 * 7 6 4 33 33 H 1.08996 * 109.47428 * 300.00264 * 8 7 6 34 34 H 1.09005 * 109.47382 * 59.99884 * 8 7 6 35 35 H 1.08992 * 109.47080 * 300.00374 * 9 8 7 36 36 H 1.08997 * 109.46697 * 60.00492 * 9 8 7 37 37 H 0.96999 * 119.99992 * 179.97438 * 14 13 11 38 38 H 1.07999 * 120.29933 * 179.97438 * 19 3 2 39 39 H 1.08001 * 120.23092 * 0.03096 * 21 20 19 40 40 H 1.08004 * 119.65248 * 180.02562 * 22 21 20 41 41 H 1.07998 * 119.63593 * 179.97438 * 23 22 21 42 42 H 1.08000 * 120.20060 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1324 1.2063 0.0000 4 6 1.3504 2.4546 -0.0061 5 8 0.1404 2.4131 -0.1105 6 8 1.9770 3.6432 0.1040 7 6 1.1432 4.8318 0.0901 8 6 2.0249 6.0748 0.2251 9 6 1.1463 7.3274 0.2098 10 16 2.1894 8.7979 0.3702 11 6 0.9552 10.0547 0.3253 12 1 -0.0858 9.7859 0.2236 13 6 1.3210 11.3902 0.4207 14 7 0.3989 12.3291 0.3877 15 14 3.1215 11.8552 0.5974 16 1 3.7181 12.0452 -0.7491 17 1 3.2330 13.1179 1.3710 18 1 3.8448 10.7721 1.3109 19 6 3.4873 1.2794 -0.0005 20 6 4.2730 0.0455 -0.0005 21 6 5.6690 0.0628 -0.0016 22 6 6.3632 -1.1275 -0.0021 23 6 5.6892 -2.3411 -0.0024 24 6 4.3107 -2.3816 -0.0027 25 6 3.5875 -1.1913 -0.0021 26 6 2.1174 -1.1789 -0.0005 27 8 1.4948 -2.2250 -0.0005 28 1 -0.3634 0.4384 -0.9293 29 1 -0.3633 -1.0243 0.0850 30 1 -0.3633 0.5856 0.8445 31 1 0.5914 4.8775 -0.8488 32 1 0.4409 4.7927 0.9228 33 1 2.5764 6.0289 1.1641 34 1 2.7275 6.1141 -0.6074 35 1 0.5951 7.3731 -0.7294 36 1 0.4435 7.2883 1.0420 37 1 0.6545 13.2624 0.4547 38 1 3.9811 2.2398 -0.0009 39 1 6.2012 1.0026 -0.0019 40 1 7.4432 -1.1162 -0.0025 41 1 6.2505 -3.2637 -0.0032 42 1 3.7951 -3.3305 -0.0026 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805570673.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:20 Heat of formation + Delta-G solvation = -97.727905 kcal Electronic energy + Delta-G solvation = -26213.371030 eV Core-core repulsion = 22249.080381 eV Total energy + Delta-G solvation = -3964.290649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.65582 -41.36119 -39.49662 -38.44658 -37.47237 -35.05578 -34.67135 -34.04135 -32.37462 -31.21874 -28.51681 -28.19241 -27.64989 -25.88658 -24.45666 -23.17666 -22.72648 -22.63222 -19.93613 -19.58587 -19.13851 -18.64653 -18.12584 -18.04063 -17.10835 -17.08870 -17.06916 -16.31197 -16.19070 -15.98146 -15.80049 -15.42127 -14.94791 -14.80882 -14.63182 -14.54224 -14.10528 -13.98662 -13.92426 -13.73064 -13.58410 -13.35772 -13.03573 -12.79308 -12.60621 -12.58193 -12.42419 -12.24831 -12.20392 -11.79072 -11.63777 -11.53671 -11.27433 -11.15071 -10.60804 -10.58357 -10.10258 -8.98209 -8.97307 -8.50711 -6.22511 -0.82980 -0.24157 0.64442 0.82131 1.16204 1.30978 1.34700 1.49285 1.62900 1.83770 1.84068 2.26025 2.67235 2.86805 2.87499 3.10649 3.14798 3.67144 3.73705 3.86336 3.86598 3.93285 4.12371 4.22411 4.27938 4.29671 4.30906 4.34364 4.44836 4.50148 4.56593 4.65005 4.68428 4.71640 4.96589 5.01137 5.02515 5.08292 5.27708 5.28792 5.36644 5.43810 5.70410 5.80362 5.85038 6.11776 6.37208 6.61911 6.92903 8.62223 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.019001 B = 0.001867 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.232737 B =14990.921748 C =16427.800260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.513 5.513 3 C 0.070 3.930 4 C 0.513 3.487 5 O -0.514 6.514 6 O -0.334 6.334 7 C 0.081 3.919 8 C -0.088 4.088 9 C -0.076 4.076 10 S -0.203 6.203 11 C -0.526 4.526 12 H 0.050 0.950 13 C 0.035 3.965 14 N -0.923 5.923 15 Si 0.927 3.073 16 H -0.261 1.261 17 H -0.266 1.266 18 H -0.224 1.224 19 C -0.070 4.070 20 C -0.037 4.037 21 C -0.099 4.099 22 C -0.082 4.082 23 C -0.113 4.113 24 C -0.073 4.073 25 C -0.155 4.155 26 C 0.540 3.460 27 O -0.560 6.560 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.276 0.724 38 H 0.194 0.806 39 H 0.170 0.830 40 H 0.168 0.832 41 H 0.161 0.839 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.029 -29.960 -0.681 33.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.231 5.231 3 C -0.030 4.030 4 C 0.358 3.642 5 O -0.404 6.404 6 O -0.249 6.249 7 C 0.005 3.995 8 C -0.126 4.126 9 C -0.224 4.224 10 S 0.025 5.975 11 C -0.674 4.674 12 H 0.069 0.931 13 C -0.169 4.169 14 N -0.561 5.561 15 Si 0.748 3.252 16 H -0.185 1.185 17 H -0.191 1.191 18 H -0.147 1.147 19 C -0.094 4.094 20 C -0.039 4.039 21 C -0.117 4.117 22 C -0.100 4.100 23 C -0.131 4.131 24 C -0.092 4.092 25 C -0.159 4.159 26 C 0.336 3.664 27 O -0.441 6.441 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.211 0.789 39 H 0.187 0.813 40 H 0.186 0.814 41 H 0.178 0.822 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 15.278 -30.225 -0.598 33.872 hybrid contribution -2.183 0.735 -0.145 2.308 sum 13.094 -29.489 -0.742 32.274 Atomic orbital electron populations 1.22206 0.76275 1.03986 1.04414 1.44930 1.09547 1.04184 1.64466 1.18459 0.92034 0.83116 1.09367 1.20619 0.85781 0.84445 0.73355 1.90911 1.15689 1.87897 1.45951 1.86470 1.41465 1.14083 1.82918 1.23171 0.92671 0.80033 1.03582 1.21162 0.97604 0.88383 1.05461 1.22982 1.00481 0.94771 1.04197 1.83770 1.16264 1.00775 1.96707 1.22374 0.93803 0.93363 1.57834 0.93142 1.25827 1.03071 0.95210 0.92840 1.70048 1.35782 1.01244 1.49013 0.85694 0.79126 0.80169 0.80242 1.18530 1.19055 1.14720 1.22564 0.89618 1.00112 0.97059 1.19183 0.95110 0.90582 0.98988 1.21658 0.90867 1.01098 0.98037 1.21847 1.02406 0.91267 0.94488 1.21676 0.92820 1.00388 0.98251 1.21234 0.95134 0.96659 0.96134 1.20031 0.90762 0.95998 1.09084 1.18542 0.88909 0.82033 0.76882 1.90821 1.69660 1.30925 1.52741 0.90156 0.89454 0.89909 0.90282 0.90364 0.89172 0.89060 0.91063 0.91081 0.91443 0.78933 0.81297 0.81411 0.82190 0.84945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.59 8.86 127.77 1.13 2.72 16 2 N -0.51 -11.71 3.04 -654.74 -1.99 -13.70 16 3 C 0.07 1.37 6.63 39.99 0.26 1.64 16 4 C 0.51 11.06 7.78 70.21 0.55 11.61 16 5 O -0.51 -13.26 12.76 19.78 0.25 -13.00 16 6 O -0.33 -6.60 9.32 -57.24 -0.53 -7.13 16 7 C 0.08 1.73 5.48 71.98 0.39 2.13 16 8 C -0.09 -2.13 5.60 30.59 0.17 -1.96 16 9 C -0.08 -2.59 5.67 71.98 0.41 -2.18 16 10 S -0.20 -9.11 19.41 -56.49 -1.10 -10.20 16 11 C -0.53 -30.05 10.04 67.95 0.68 -29.37 16 12 H 0.05 3.15 8.03 -2.91 -0.02 3.13 16 13 C 0.04 2.02 5.50 84.86 0.47 2.48 16 14 N -0.92 -55.95 13.97 21.65 0.30 -55.65 16 15 Si 0.93 42.51 27.74 68.60 1.90 44.41 16 16 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 18 H -0.22 -9.70 6.74 99.48 0.67 -9.03 16 19 C -0.07 -0.98 9.53 23.77 0.23 -0.76 16 20 C -0.04 -0.53 5.89 -20.08 -0.12 -0.64 16 21 C -0.10 -0.76 9.86 22.50 0.22 -0.53 16 22 C -0.08 -0.45 10.01 22.30 0.22 -0.23 16 23 C -0.11 -0.91 10.01 22.33 0.22 -0.69 16 24 C -0.07 -1.09 9.65 22.44 0.22 -0.87 16 25 C -0.16 -2.95 5.90 -19.95 -0.12 -3.06 16 26 C 0.54 13.29 7.63 86.55 0.66 13.95 16 27 O -0.56 -16.72 15.77 -4.47 -0.07 -16.79 16 28 H 0.08 1.76 7.28 -2.39 -0.02 1.74 16 29 H 0.09 1.95 6.83 -2.38 -0.02 1.93 16 30 H 0.08 1.80 6.98 -2.39 -0.02 1.78 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 35 H 0.07 2.46 8.14 -2.40 -0.02 2.44 16 36 H 0.07 2.46 8.14 -2.40 -0.02 2.44 16 37 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 38 H 0.19 1.65 7.45 -2.91 -0.02 1.63 16 39 H 0.17 0.31 8.06 -2.91 -0.02 0.28 16 40 H 0.17 -0.19 8.06 -2.91 -0.02 -0.21 16 41 H 0.16 0.38 8.06 -2.91 -0.02 0.35 16 42 H 0.13 2.06 7.77 -2.91 -0.02 2.03 16 Total: -1.00 -74.36 372.66 5.38 -68.98 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 1.01 Total: 8.86 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 5.60 Total: -5.77 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -1.69 Total: -69.35 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -0.35 Total: -36.93 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.90 Total: 44.41 kcal Atomic # 16 Polarization: -9.11 SS G_CDS: -1.10 Total: -10.20 kcal Total: -74.36 5.38 -68.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805570673.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.749 kcal (2) G-P(sol) polarization free energy of solvation -74.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds