Wall clock time and date at job start Wed Apr 1 2020 04:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30842 * 125.89798 * 2 1 4 4 N 1.40084 * 108.20663 * 180.25438 * 3 2 1 5 5 C 1.46495 * 126.04013 * 179.73793 * 4 3 2 6 6 C 1.50699 * 109.47131 * 269.98016 * 5 4 3 7 7 H 1.08002 * 119.99767 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00208 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99755 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00053 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47257 * 89.99976 * 10 8 6 12 12 H 1.48501 * 109.46940 * 210.00122 * 10 8 6 13 13 H 1.48499 * 109.47462 * 329.99632 * 10 8 6 14 14 C 1.34950 * 107.92381 * 359.71898 * 4 3 2 15 15 C 1.50694 * 126.12576 * 179.97438 * 14 4 3 16 16 C 1.35319 * 107.74352 * 359.97438 * 14 4 3 17 17 C 1.50706 * 126.03437 * 180.02562 * 16 14 4 18 18 C 1.53000 * 109.47116 * 90.00130 * 17 16 14 19 19 C 1.50696 * 109.47110 * 179.97438 * 18 17 16 20 20 O 1.21281 * 120.00042 * 0.02562 * 19 18 17 21 21 N 1.34784 * 119.99865 * 179.97438 * 19 18 17 22 22 C 1.46496 * 119.99741 * 179.97438 * 21 19 18 23 23 C 1.53000 * 109.46986 * 180.02562 * 22 21 19 24 24 Cl 1.80302 * 109.47295 * 300.00337 * 23 22 21 25 25 Cl 1.80296 * 109.47336 * 60.00190 * 23 22 21 26 26 H 1.08998 * 109.47393 * 270.21132 * 1 2 3 27 27 H 1.09001 * 109.46747 * 30.21871 * 1 2 3 28 28 H 1.08998 * 109.46776 * 150.21632 * 1 2 3 29 29 H 1.09001 * 109.47188 * 29.97306 * 5 4 3 30 30 H 1.08997 * 109.47530 * 149.97532 * 5 4 3 31 31 H 0.96999 * 120.00262 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.47170 * 270.02464 * 15 14 4 33 33 H 1.09004 * 109.47112 * 30.02444 * 15 14 4 34 34 H 1.09003 * 109.46820 * 150.02019 * 15 14 4 35 35 H 1.09000 * 109.46646 * 209.99544 * 17 16 14 36 36 H 1.09000 * 109.47248 * 330.00261 * 17 16 14 37 37 H 1.09000 * 109.47214 * 300.00167 * 18 17 16 38 38 H 1.09008 * 109.47142 * 59.99333 * 18 17 16 39 39 H 0.96998 * 119.99578 * 0.02562 * 21 19 18 40 40 H 1.09000 * 109.47710 * 300.00483 * 22 21 19 41 41 H 1.09000 * 109.46883 * 60.00527 * 22 21 19 42 42 H 1.09002 * 109.47131 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0059 5 6 4.7899 1.5008 -0.0133 6 6 5.1881 1.7951 -1.4366 7 1 4.6186 1.3779 -2.2540 8 6 6.2795 2.5970 -1.6955 9 7 6.9727 3.1054 -0.7002 10 14 6.7735 2.9611 -3.4598 11 1 6.0756 4.1860 -3.9265 12 1 8.2419 3.1711 -3.5293 13 1 6.3958 1.8157 -4.3261 14 6 3.6143 -0.7153 -0.0031 15 6 4.8351 -1.5988 -0.0081 16 6 2.3272 -1.1329 0.0048 17 6 1.8600 -2.5657 0.0109 18 6 1.7097 -3.0470 1.4555 19 6 1.2420 -4.4795 1.4616 20 8 1.0484 -5.0587 0.4137 21 7 1.0398 -5.1174 2.6316 22 6 0.5846 -6.5099 2.6375 23 6 0.4344 -6.9912 4.0820 24 17 2.0252 -6.8753 4.9226 25 17 -0.7733 -5.9605 4.9364 26 1 -0.3634 0.0038 1.0276 27 1 -0.3633 0.8880 -0.5172 28 1 -0.3633 -0.8919 -0.5105 29 1 4.5588 2.4344 0.4996 30 1 5.6118 0.9994 0.4977 31 1 7.7407 3.6692 -0.8822 32 1 5.1240 -1.8136 -1.0369 33 1 5.6539 -1.0899 0.5006 34 1 4.6103 -2.5319 0.5087 35 1 0.8985 -2.6365 -0.4975 36 1 2.5908 -3.1883 -0.5052 37 1 2.6712 -2.9761 1.9640 38 1 0.9790 -2.4243 1.9718 39 1 1.1950 -4.6543 3.4696 40 1 -0.3774 -6.5799 2.1296 41 1 1.3145 -7.1329 2.1206 42 1 0.0961 -8.0273 4.0864 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816604511.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:02 Heat of formation + Delta-G solvation = -28.654690 kcal Electronic energy + Delta-G solvation = -25236.006369 eV Core-core repulsion = 21302.527155 eV Total energy + Delta-G solvation = -3933.479215 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.091 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.13987 -40.69566 -37.97952 -36.92582 -36.13475 -35.79702 -34.83114 -34.18372 -32.02091 -30.91315 -30.37852 -28.04023 -27.60752 -25.48951 -24.18246 -23.26669 -21.46894 -20.29763 -20.12660 -18.82425 -18.15281 -17.39547 -17.28717 -17.16685 -16.30088 -16.17595 -15.96989 -15.49163 -15.16713 -14.86329 -14.61930 -14.44552 -14.23366 -14.10759 -13.94307 -13.67072 -13.45473 -13.31479 -13.17407 -13.14307 -12.84270 -12.74558 -12.62594 -12.57330 -12.22352 -12.20099 -12.03292 -11.83633 -11.77567 -11.70625 -11.52564 -11.14741 -10.88155 -10.75808 -10.16038 -9.82780 -9.01179 -8.35147 -6.52907 0.39295 1.00778 1.18758 1.35303 1.36613 1.47761 1.69546 1.88115 1.95900 2.21948 2.32913 2.94242 3.06633 3.75355 3.83904 3.93039 3.98237 4.24319 4.28557 4.34086 4.38035 4.52174 4.59384 4.66377 4.73719 4.76122 4.86361 4.88548 4.91976 4.98854 5.05395 5.15388 5.27226 5.39533 5.46514 5.50570 5.57604 5.80156 6.07265 6.32770 6.44978 6.62484 7.13078 7.18469 7.23876 8.70845 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.018749 B = 0.002045 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.076502 B =13685.971588 C =14180.600943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.054 3.946 3 N -0.351 5.351 4 N -0.356 5.356 5 C 0.275 3.725 6 C -0.552 4.552 7 H 0.047 0.953 8 C 0.021 3.979 9 N -0.918 5.918 10 Si 0.971 3.029 11 H -0.275 1.275 12 H -0.269 1.269 13 H -0.270 1.270 14 C 0.078 3.922 15 C -0.083 4.083 16 C -0.257 4.257 17 C -0.003 4.003 18 C -0.128 4.128 19 C 0.526 3.474 20 O -0.573 6.573 21 N -0.725 5.725 22 C 0.109 3.891 23 C 0.058 3.942 24 Cl -0.144 7.144 25 Cl -0.143 7.143 26 H 0.090 0.910 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.018 0.982 30 H 0.047 0.953 31 H 0.274 0.726 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.411 0.589 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.889 -24.078 11.836 30.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 N -0.175 5.175 4 N -0.136 5.136 5 C 0.156 3.844 6 C -0.590 4.590 7 H 0.065 0.935 8 C -0.180 4.180 9 N -0.557 5.557 10 Si 0.795 3.205 11 H -0.200 1.200 12 H -0.194 1.194 13 H -0.194 1.194 14 C -0.052 4.052 15 C -0.141 4.141 16 C -0.269 4.269 17 C -0.042 4.042 18 C -0.168 4.168 19 C 0.314 3.686 20 O -0.452 6.452 21 N -0.379 5.379 22 C -0.015 4.015 23 C -0.012 4.012 24 Cl -0.118 7.118 25 Cl -0.117 7.117 26 H 0.109 0.891 27 H 0.082 0.918 28 H 0.111 0.889 29 H 0.036 0.964 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.248 0.752 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -13.665 -22.909 11.291 28.966 hybrid contribution 0.732 0.315 -0.249 0.835 sum -12.934 -22.593 11.043 28.279 Atomic orbital electron populations 1.20212 0.84678 1.03476 1.03746 1.22795 0.98140 0.90224 0.99928 1.77211 0.87810 1.25088 1.27411 1.48999 1.05325 1.05199 1.54097 1.19115 0.79066 0.88720 0.97505 1.21427 1.13421 1.32369 0.91814 0.93491 1.25751 0.95409 0.94474 1.02324 1.69999 1.19347 1.33185 1.33139 0.85361 0.77874 0.78667 0.78638 1.20017 1.19356 1.19411 1.21469 0.98239 0.84654 1.00828 1.20440 0.92247 0.97928 1.03457 1.19728 0.90269 0.96610 1.20280 1.19366 1.01445 0.88271 0.95151 1.21644 1.04274 0.91373 0.99502 1.20873 0.75802 0.89104 0.82852 1.90704 1.52706 1.69049 1.32735 1.45940 1.69299 1.13311 1.09344 1.21942 1.03375 0.83929 0.92240 1.27676 0.81727 1.01441 0.90318 1.98819 1.33099 1.98648 1.81258 1.98816 1.59380 1.72853 1.80640 0.89108 0.91783 0.88892 0.96363 0.93545 0.91729 0.90576 0.91945 0.87462 0.90887 0.91680 0.87945 0.87433 0.75180 0.87948 0.88105 0.80144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.64 10.26 71.24 0.73 -0.91 16 2 C 0.05 2.00 7.22 43.10 0.31 2.31 16 3 N -0.35 -16.55 12.58 -47.38 -0.60 -17.14 16 4 N -0.36 -17.17 3.60 -338.42 -1.22 -18.39 16 5 C 0.28 14.85 6.00 85.63 0.51 15.36 16 6 C -0.55 -31.64 9.39 25.60 0.24 -31.40 16 7 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 8 C 0.02 1.19 5.46 84.66 0.46 1.65 16 9 N -0.92 -52.73 13.29 21.45 0.28 -52.45 16 10 Si 0.97 43.83 29.54 68.60 2.03 45.85 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 13 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 14 C 0.08 3.07 6.93 41.40 0.29 3.36 16 15 C -0.08 -2.66 9.72 71.23 0.69 -1.97 16 16 C -0.26 -8.79 5.35 -20.14 -0.11 -8.90 16 17 C 0.00 -0.09 4.41 29.85 0.13 0.04 16 18 C -0.13 -2.46 5.68 29.85 0.17 -2.29 16 19 C 0.53 10.01 7.83 87.65 0.69 10.70 16 20 O -0.57 -15.04 15.98 -3.03 -0.05 -15.09 16 21 N -0.72 -9.32 5.07 -463.06 -2.35 -11.67 16 22 C 0.11 0.98 5.43 86.38 0.47 1.45 16 23 C 0.06 0.34 4.11 71.98 0.30 0.64 16 24 Cl -0.14 -1.49 28.08 -2.72 -0.08 -1.57 16 25 Cl -0.14 -1.41 28.08 -2.72 -0.08 -1.49 16 26 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.09 2.00 7.25 -2.39 -0.02 1.98 16 29 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.05 2.48 7.05 -2.39 -0.02 2.47 16 31 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 32 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.06 2.12 7.08 -2.39 -0.02 2.10 16 34 H 0.11 2.59 7.77 -2.39 -0.02 2.57 16 35 H 0.07 1.86 7.20 -2.39 -0.02 1.84 16 36 H 0.06 1.74 7.73 -2.39 -0.02 1.73 16 37 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.41 4.44 7.68 -92.71 -0.71 3.73 16 40 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.18 -0.03 8.14 -2.39 -0.02 -0.05 16 Total: -1.00 -73.11 386.49 3.17 -69.95 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.34 Total: 11.92 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 4.88 Total: -9.93 kcal Atomic # 7 Polarization: -95.77 SS G_CDS: -3.88 Total: -99.65 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.05 Total: -15.09 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 17 Polarization: -2.90 SS G_CDS: -0.15 Total: -3.05 kcal Total: -73.11 3.17 -69.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816604511.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.292 kcal (2) G-P(sol) polarization free energy of solvation -73.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds