Wall clock time and date at job start Wed Apr 1 2020 04:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47209 * 2 1 4 4 C 1.50693 * 109.47529 * 239.99327 * 2 1 3 5 5 H 1.08001 * 120.00791 * 240.00692 * 4 2 1 6 6 C 1.37890 * 119.99736 * 60.00119 * 4 2 1 7 7 N 1.31516 * 119.99573 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00051 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46754 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46715 * 120.00114 * 8 6 4 11 11 H 1.48499 * 109.47232 * 240.00291 * 8 6 4 12 12 C 1.53003 * 109.46684 * 119.99634 * 2 1 3 13 13 S 1.81397 * 109.47176 * 299.99882 * 12 2 1 14 14 O 1.42100 * 110.54655 * 291.29165 * 13 12 2 15 15 O 1.42104 * 110.54035 * 68.04436 * 13 12 2 16 16 N 1.65603 * 104.45003 * 179.66747 * 13 12 2 17 17 C 1.46493 * 119.99958 * 63.29404 * 16 13 12 18 18 H 1.08999 * 109.47097 * 334.87748 * 17 16 13 19 19 C 1.53001 * 109.47163 * 214.87966 * 17 16 13 20 20 C 1.52997 * 109.47741 * 65.53908 * 19 17 16 21 21 O 1.42891 * 109.47513 * 184.59394 * 20 19 17 22 22 C 1.50698 * 109.47229 * 94.87850 * 17 16 13 23 23 C 1.33390 * 125.20291 * 219.72228 * 22 17 16 24 24 C 1.38428 * 114.91781 * 179.85710 * 23 22 17 25 25 C 1.33391 * 114.92342 * 0.43048 * 24 23 22 26 26 S 1.75887 * 109.59216 * 359.76842 * 25 24 23 27 27 H 1.08993 * 109.47337 * 300.00801 * 1 2 3 28 28 H 1.09007 * 109.46408 * 60.00172 * 1 2 3 29 29 H 1.08995 * 109.47227 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46988 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47047 * 299.99321 * 3 2 1 32 32 H 1.08994 * 109.47190 * 59.99681 * 3 2 1 33 33 H 0.96999 * 119.99261 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.47202 * 180.02562 * 12 2 1 35 35 H 1.09003 * 109.47304 * 60.00207 * 12 2 1 36 36 H 0.96998 * 120.00026 * 243.29733 * 16 13 12 37 37 H 1.09000 * 109.47415 * 185.54272 * 19 17 16 38 38 H 1.09004 * 109.46852 * 305.53455 * 19 17 16 39 39 H 1.09005 * 109.46939 * 304.59486 * 20 19 17 40 40 H 1.09002 * 109.47155 * 64.58640 * 20 19 17 41 41 H 0.96704 * 114.00238 * 180.02562 * 21 20 19 42 42 H 1.07995 * 122.54265 * 0.02562 * 23 22 17 43 43 H 1.08004 * 122.53417 * 180.19563 * 24 23 22 44 44 H 1.07993 * 125.19934 * 179.75353 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3227 -1.1198 -4.0079 9 1 3.1476 -2.2865 -3.6035 10 1 1.1680 -1.5868 -4.8164 11 1 3.1475 -0.1860 -4.8160 12 6 2.0399 -0.7212 1.2493 13 16 1.4353 0.1340 2.7304 14 8 2.0536 1.4070 2.8586 15 8 0.0268 -0.0117 2.8502 16 7 2.0458 -0.7456 3.9937 17 6 3.4947 -0.8404 4.1877 18 1 3.9999 -0.6835 3.2346 19 6 3.8471 -2.2272 4.7295 20 6 3.5218 -3.2852 3.6733 21 8 3.7500 -4.5869 4.2170 22 6 3.9397 0.2112 5.1711 23 6 5.0582 0.9314 5.0732 24 6 5.2568 1.8423 6.0965 25 6 4.3041 1.8555 7.0300 26 16 3.0675 0.6713 6.6275 27 1 -0.3633 0.5139 0.8898 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 0.7091 1.1611 -3.4845 34 1 3.1300 -0.7209 1.2497 35 1 1.6766 -1.7489 1.2494 36 1 1.4440 -1.1980 4.6052 37 1 4.9103 -2.2653 4.9665 38 1 3.2667 -2.4232 5.6310 39 1 2.4770 -3.1934 3.3767 40 1 4.1609 -3.1380 2.8026 41 1 3.5641 -5.3086 3.6008 42 1 5.7547 0.8146 4.2561 43 1 6.1198 2.4904 6.1378 44 1 4.2939 2.4953 7.8999 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830657917.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:34 Heat of formation + Delta-G solvation = -93.949869 kcal Electronic energy + Delta-G solvation = -27607.481448 eV Core-core repulsion = 23778.798578 eV Total energy + Delta-G solvation = -3828.682870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.106 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.63400 -37.22044 -36.56169 -36.33033 -35.75606 -35.30587 -31.72770 -30.97474 -29.56291 -26.75255 -25.76193 -25.51494 -25.26554 -23.18378 -21.61567 -19.91265 -19.29612 -18.85638 -17.71339 -17.53402 -17.27161 -16.01975 -15.76177 -15.61007 -15.37775 -15.17502 -14.78199 -14.48047 -14.29934 -13.46876 -13.15747 -13.15144 -13.00136 -12.77184 -12.56035 -12.50907 -12.15964 -12.11421 -11.75389 -11.63716 -11.45193 -11.31867 -11.11899 -11.08123 -10.96436 -10.78385 -10.75312 -10.41245 -10.32012 -10.20026 -10.12692 -9.82240 -9.70205 -9.44480 -8.75857 -8.67010 -8.44892 -8.43602 -6.08051 -4.20325 0.75552 0.98748 1.61821 2.01217 2.71669 3.14439 3.21382 3.30160 3.31781 3.88890 4.21882 4.33263 4.59035 4.68557 4.78552 4.87416 4.98636 5.03290 5.17553 5.22338 5.30672 5.40444 5.49543 5.54728 5.59492 5.69694 5.83978 5.89228 6.11841 6.24793 6.29717 6.46223 6.64339 6.74804 6.85917 6.93838 7.02715 7.26822 7.42861 7.45515 7.63252 7.93652 8.04624 8.27797 8.78216 9.45402 10.93303 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013355 B = 0.003739 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.012201 B = 7486.261130 C = 8240.383727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.083 3.917 3 C -0.163 4.163 4 C -0.502 4.502 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.882 5.882 8 Si 0.895 3.105 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.583 4.583 13 S 2.587 3.413 14 O -0.952 6.952 15 O -0.962 6.962 16 N -1.126 6.126 17 C 0.230 3.770 18 H 0.105 0.895 19 C -0.120 4.120 20 C 0.070 3.930 21 O -0.576 6.576 22 C -0.180 4.180 23 C -0.129 4.129 24 C -0.131 4.131 25 C -0.219 4.219 26 S 0.111 5.889 27 H 0.027 0.973 28 H 0.095 0.905 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.095 0.905 32 H 0.028 0.972 33 H 0.262 0.738 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.413 0.587 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.382 0.618 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.262 -4.559 16.077 18.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.081 3.919 3 C -0.221 4.221 4 C -0.541 4.541 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.723 3.277 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.717 4.717 13 S 2.685 3.315 14 O -0.942 6.942 15 O -0.952 6.952 16 N -0.881 5.881 17 C 0.120 3.880 18 H 0.122 0.878 19 C -0.159 4.159 20 C -0.008 4.008 21 O -0.382 6.382 22 C -0.300 4.300 23 C -0.159 4.159 24 C -0.162 4.162 25 C -0.355 4.355 26 S 0.375 5.625 27 H 0.046 0.954 28 H 0.114 0.886 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.114 0.886 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.247 0.753 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.229 0.771 42 H 0.159 0.841 43 H 0.157 0.843 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.561 -3.658 17.151 18.397 hybrid contribution 1.622 -0.893 -2.048 2.761 sum 7.183 -4.551 15.103 17.332 Atomic orbital electron populations 1.22280 0.96898 1.00633 1.02380 1.17928 0.92837 0.92224 0.88928 1.22269 0.99693 0.97760 1.02385 1.20954 1.31765 1.12085 0.89339 0.92276 1.24944 0.94868 0.94963 0.98951 1.69812 1.36253 1.22540 1.23421 0.86488 0.78655 0.79605 0.82937 1.19853 1.20938 1.20921 1.30566 1.11087 1.12933 1.17095 1.05895 0.74569 0.75437 0.75594 1.93577 1.77645 1.37811 1.85169 1.93563 1.29269 1.86629 1.85745 1.56188 1.12791 1.71872 1.47291 1.18985 0.80716 0.91498 0.96829 0.87763 1.21812 1.03590 0.91147 0.99358 1.22230 1.00256 0.82729 0.95606 1.86413 1.91554 1.15759 1.44427 1.24835 0.99672 1.04578 1.00876 1.20089 0.98161 0.96997 1.00701 1.20126 1.00650 1.00736 0.94649 1.25613 0.99131 1.05609 1.05170 1.84127 1.25650 1.34667 1.18087 0.95371 0.88608 0.94480 0.94466 0.88636 0.95349 0.92754 0.86579 0.86281 0.75319 0.89469 0.90090 0.92795 0.92906 0.77094 0.84073 0.84341 0.82084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 7.77 37.16 0.29 -3.68 16 2 C 0.08 1.95 0.52 -155.66 -0.08 1.87 16 3 C -0.16 -3.93 7.78 37.16 0.29 -3.64 16 4 C -0.50 -12.74 8.01 -34.44 -0.28 -13.01 16 5 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 6 C 0.06 1.68 5.15 -17.81 -0.09 1.59 16 7 N -0.88 -23.66 9.35 55.43 0.52 -23.14 16 8 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 9 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 C -0.58 -10.72 4.85 37.16 0.18 -10.54 16 13 S 2.59 46.44 4.42 -107.50 -0.48 45.97 16 14 O -0.95 -19.59 15.47 -57.54 -0.89 -20.48 16 15 O -0.96 -19.87 15.67 -57.54 -0.90 -20.77 16 16 N -1.13 -14.76 4.52 -5.89 -0.03 -14.79 16 17 C 0.23 2.66 2.51 -69.09 -0.17 2.49 16 18 H 0.10 1.14 7.01 -51.93 -0.36 0.77 16 19 C -0.12 -1.17 5.16 -26.73 -0.14 -1.31 16 20 C 0.07 0.68 6.99 37.16 0.26 0.93 16 21 O -0.58 -5.70 13.66 -35.23 -0.48 -6.18 16 22 C -0.18 -2.25 5.43 -36.00 -0.20 -2.45 16 23 C -0.13 -1.53 10.04 -41.21 -0.41 -1.94 16 24 C -0.13 -1.43 10.18 -41.21 -0.42 -1.85 16 25 C -0.22 -2.37 11.23 29.04 0.33 -2.05 16 26 S 0.11 1.33 23.07 -107.50 -2.48 -1.15 16 27 H 0.03 0.65 5.45 -51.93 -0.28 0.37 16 28 H 0.10 2.51 6.07 -51.93 -0.32 2.19 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.10 2.50 6.07 -51.93 -0.32 2.18 16 32 H 0.03 0.65 5.48 -51.93 -0.28 0.37 16 33 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 34 H 0.12 1.87 7.35 -51.92 -0.38 1.49 16 35 H 0.12 1.94 8.14 -51.92 -0.42 1.52 16 36 H 0.41 4.65 8.80 -34.47 -0.30 4.35 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.51 7.65 -51.93 -0.40 0.12 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.38 2.26 9.12 45.56 0.42 2.67 16 42 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 43 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 44 H 0.16 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 374.71 15.07 5.65 5.65 Total: -1.00 -33.07 374.71 -10.13 -43.20 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.57 Total: 10.15 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: -0.44 Total: -33.59 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.49 Total: -37.93 kcal Atomic # 8 Polarization: -45.15 SS G_CDS: -2.27 Total: -47.42 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 47.77 SS G_CDS: -2.96 Total: 44.81 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.07 -10.13 -43.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830657917.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.754 kcal (2) G-P(sol) polarization free energy of solvation -33.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds