Wall clock time and date at job start Wed Apr 1 2020 04:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47209 * 2 1 4 4 C 1.50693 * 109.47529 * 239.99327 * 2 1 3 5 5 H 1.08001 * 120.00791 * 240.00692 * 4 2 1 6 6 C 1.37890 * 119.99736 * 60.00119 * 4 2 1 7 7 N 1.31516 * 119.99573 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00051 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46754 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46715 * 120.00114 * 8 6 4 11 11 H 1.48499 * 109.47232 * 240.00291 * 8 6 4 12 12 C 1.53003 * 109.46684 * 119.99634 * 2 1 3 13 13 S 1.81397 * 109.47176 * 299.99882 * 12 2 1 14 14 O 1.42100 * 110.54655 * 291.29165 * 13 12 2 15 15 O 1.42104 * 110.54035 * 68.04436 * 13 12 2 16 16 N 1.65603 * 104.45003 * 179.66747 * 13 12 2 17 17 C 1.46493 * 119.99958 * 63.29404 * 16 13 12 18 18 H 1.08999 * 109.47097 * 334.87748 * 17 16 13 19 19 C 1.53001 * 109.47163 * 214.87966 * 17 16 13 20 20 C 1.52997 * 109.47741 * 65.53908 * 19 17 16 21 21 O 1.42891 * 109.47513 * 184.59394 * 20 19 17 22 22 C 1.50698 * 109.47229 * 94.87850 * 17 16 13 23 23 C 1.33390 * 125.20291 * 219.72228 * 22 17 16 24 24 C 1.38428 * 114.91781 * 179.85710 * 23 22 17 25 25 C 1.33391 * 114.92342 * 0.43048 * 24 23 22 26 26 S 1.75887 * 109.59216 * 359.76842 * 25 24 23 27 27 H 1.08993 * 109.47337 * 300.00801 * 1 2 3 28 28 H 1.09007 * 109.46408 * 60.00172 * 1 2 3 29 29 H 1.08995 * 109.47227 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46988 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47047 * 299.99321 * 3 2 1 32 32 H 1.08994 * 109.47190 * 59.99681 * 3 2 1 33 33 H 0.96999 * 119.99261 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.47202 * 180.02562 * 12 2 1 35 35 H 1.09003 * 109.47304 * 60.00207 * 12 2 1 36 36 H 0.96998 * 120.00026 * 243.29733 * 16 13 12 37 37 H 1.09000 * 109.47415 * 185.54272 * 19 17 16 38 38 H 1.09004 * 109.46852 * 305.53455 * 19 17 16 39 39 H 1.09005 * 109.46939 * 304.59486 * 20 19 17 40 40 H 1.09002 * 109.47155 * 64.58640 * 20 19 17 41 41 H 0.96704 * 114.00238 * 180.02562 * 21 20 19 42 42 H 1.07995 * 122.54265 * 0.02562 * 23 22 17 43 43 H 1.08004 * 122.53417 * 180.19563 * 24 23 22 44 44 H 1.07993 * 125.19934 * 179.75353 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3227 -1.1198 -4.0079 9 1 3.1476 -2.2865 -3.6035 10 1 1.1680 -1.5868 -4.8164 11 1 3.1475 -0.1860 -4.8160 12 6 2.0399 -0.7212 1.2493 13 16 1.4353 0.1340 2.7304 14 8 2.0536 1.4070 2.8586 15 8 0.0268 -0.0117 2.8502 16 7 2.0458 -0.7456 3.9937 17 6 3.4947 -0.8404 4.1877 18 1 3.9999 -0.6835 3.2346 19 6 3.8471 -2.2272 4.7295 20 6 3.5218 -3.2852 3.6733 21 8 3.7500 -4.5869 4.2170 22 6 3.9397 0.2112 5.1711 23 6 5.0582 0.9314 5.0732 24 6 5.2568 1.8423 6.0965 25 6 4.3041 1.8555 7.0300 26 16 3.0675 0.6713 6.6275 27 1 -0.3633 0.5139 0.8898 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 0.7091 1.1611 -3.4845 34 1 3.1300 -0.7209 1.2497 35 1 1.6766 -1.7489 1.2494 36 1 1.4440 -1.1980 4.6052 37 1 4.9103 -2.2653 4.9665 38 1 3.2667 -2.4232 5.6310 39 1 2.4770 -3.1934 3.3767 40 1 4.1609 -3.1380 2.8026 41 1 3.5641 -5.3086 3.6008 42 1 5.7547 0.8146 4.2561 43 1 6.1198 2.4904 6.1378 44 1 4.2939 2.4953 7.8999 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830657917.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:33 Heat of formation + Delta-G solvation = -118.094664 kcal Electronic energy + Delta-G solvation = -27608.528445 eV Core-core repulsion = 23778.798578 eV Total energy + Delta-G solvation = -3829.729867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.106 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.50571 -38.13338 -38.06729 -37.98595 -36.89530 -36.60235 -33.62737 -31.93661 -30.38167 -28.36586 -27.68753 -27.23855 -26.35319 -23.99841 -22.46499 -21.45318 -20.55302 -20.03136 -18.78445 -18.56069 -18.32973 -17.82613 -16.91847 -16.78771 -16.67325 -16.38559 -16.23328 -15.59214 -15.06808 -14.98640 -14.67146 -14.42434 -14.24881 -14.05745 -13.83426 -13.65138 -13.46345 -13.13774 -13.00835 -12.96530 -12.89941 -12.74977 -12.65813 -12.55932 -12.44396 -12.18241 -12.10877 -12.00642 -11.94224 -11.66457 -11.55983 -11.39766 -10.88913 -10.77305 -10.48364 -10.40943 -9.55922 -9.32767 -8.01790 -6.20118 -0.65596 0.11104 0.75026 1.15390 1.44333 1.47938 1.56657 1.78224 1.97691 2.45301 2.83052 3.15733 3.21277 3.33999 3.77156 3.87676 3.94954 4.10980 4.13848 4.25182 4.28925 4.48696 4.49227 4.60291 4.67304 4.71871 4.76935 4.86027 4.87351 4.99277 5.08094 5.09074 5.13977 5.27248 5.39535 5.40974 5.51073 5.63183 5.66549 5.97488 5.98355 6.12297 6.34708 6.85332 6.90981 7.48476 8.98329 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013355 B = 0.003739 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.012201 B = 7486.261130 C = 8240.383727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.071 3.929 3 C -0.159 4.159 4 C -0.512 4.512 5 H 0.068 0.932 6 C 0.017 3.983 7 N -0.909 5.909 8 Si 0.953 3.047 9 H -0.262 1.262 10 H -0.286 1.286 11 H -0.286 1.286 12 C -0.584 4.584 13 S 2.605 3.395 14 O -0.981 6.981 15 O -0.993 6.993 16 N -1.110 6.110 17 C 0.226 3.774 18 H 0.114 0.886 19 C -0.111 4.111 20 C 0.065 3.935 21 O -0.591 6.591 22 C -0.199 4.199 23 C -0.138 4.138 24 C -0.141 4.141 25 C -0.219 4.219 26 S 0.085 5.915 27 H 0.029 0.971 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.030 0.970 33 H 0.260 0.740 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.423 0.577 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.398 0.602 42 H 0.156 0.844 43 H 0.162 0.838 44 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.936 -5.841 16.811 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.069 3.931 3 C -0.217 4.217 4 C -0.551 4.551 5 H 0.086 0.914 6 C -0.182 4.182 7 N -0.548 5.548 8 Si 0.779 3.221 9 H -0.186 1.186 10 H -0.213 1.213 11 H -0.212 1.212 12 C -0.717 4.717 13 S 2.703 3.297 14 O -0.970 6.970 15 O -0.983 6.983 16 N -0.869 5.869 17 C 0.117 3.883 18 H 0.131 0.869 19 C -0.151 4.151 20 C -0.013 4.013 21 O -0.399 6.399 22 C -0.318 4.318 23 C -0.169 4.169 24 C -0.172 4.172 25 C -0.354 4.354 26 S 0.348 5.652 27 H 0.048 0.952 28 H 0.088 0.912 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.259 0.741 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.248 0.752 42 H 0.173 0.827 43 H 0.179 0.821 44 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 7.233 -4.960 17.887 19.921 hybrid contribution 1.135 -0.481 -2.202 2.524 sum 8.368 -5.441 15.685 18.591 Atomic orbital electron populations 1.22222 0.98001 1.00502 1.01187 1.17906 0.92140 0.92137 0.90925 1.22198 0.99953 0.98390 1.01179 1.21316 1.31453 1.12245 0.90099 0.91408 1.25678 0.95224 0.95624 1.01703 1.69961 1.37332 1.23784 1.23700 0.85585 0.77981 0.78808 0.79716 1.18602 1.21260 1.21184 1.30466 1.12789 1.13523 1.14928 1.05058 0.73610 0.75090 0.75941 1.93538 1.77941 1.39836 1.85713 1.93514 1.31427 1.87054 1.86326 1.55701 1.13975 1.71316 1.45916 1.19215 0.79275 0.92488 0.97359 0.86862 1.21729 1.04018 0.90022 0.99295 1.22278 1.00536 0.82711 0.95728 1.86370 1.91662 1.16352 1.45553 1.24986 1.00209 1.05364 1.01243 1.20437 0.98278 0.96803 1.01347 1.20450 1.01479 1.00898 0.94328 1.25959 0.98309 1.05242 1.05923 1.84174 1.26753 1.35716 1.18543 0.95193 0.91162 0.94000 0.93833 0.91263 0.95118 0.93044 0.84031 0.83996 0.74072 0.88625 0.90202 0.92727 0.92001 0.75230 0.82658 0.82083 0.79803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.84 7.77 71.98 0.56 -7.28 16 2 C 0.07 3.28 0.52 -52.93 -0.03 3.25 16 3 C -0.16 -7.68 7.78 71.98 0.56 -7.12 16 4 C -0.51 -25.36 8.01 25.60 0.21 -25.16 16 5 H 0.07 3.17 7.74 -2.91 -0.02 3.15 16 6 C 0.02 0.87 5.15 84.66 0.44 1.31 16 7 N -0.91 -49.41 9.35 21.45 0.20 -49.21 16 8 Si 0.95 40.83 29.54 68.60 2.03 42.86 16 9 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 10 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 12 C -0.58 -20.27 4.85 71.98 0.35 -19.92 16 13 S 2.61 90.54 4.42 -56.49 -0.25 90.29 16 14 O -0.98 -39.60 15.47 -127.65 -1.98 -41.57 16 15 O -0.99 -40.51 15.67 -127.65 -2.00 -42.51 16 16 N -1.11 -27.26 4.52 -172.54 -0.78 -28.04 16 17 C 0.23 4.77 2.51 44.25 0.11 4.88 16 18 H 0.11 2.18 7.01 -2.39 -0.02 2.16 16 19 C -0.11 -1.92 5.16 30.59 0.16 -1.76 16 20 C 0.07 1.09 6.99 71.98 0.50 1.60 16 21 O -0.59 -10.29 13.66 -148.98 -2.03 -12.33 16 22 C -0.20 -4.64 5.43 24.59 0.13 -4.51 16 23 C -0.14 -3.01 10.04 21.22 0.21 -2.79 16 24 C -0.14 -2.80 10.18 21.22 0.22 -2.58 16 25 C -0.22 -4.33 11.23 66.72 0.75 -3.58 16 26 S 0.08 1.93 23.07 -56.49 -1.30 0.63 16 27 H 0.03 1.40 5.45 -2.39 -0.01 1.39 16 28 H 0.07 3.76 6.07 -2.38 -0.01 3.75 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 32 H 0.03 1.42 5.48 -2.39 -0.01 1.41 16 33 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 34 H 0.14 4.14 7.35 -2.39 -0.02 4.12 16 35 H 0.14 4.24 8.14 -2.39 -0.02 4.22 16 36 H 0.42 8.90 8.80 -96.75 -0.85 8.05 16 37 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.05 0.90 7.65 -2.38 -0.02 0.88 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.40 3.78 9.12 -74.05 -0.68 3.10 16 42 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 43 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 44 H 0.18 2.62 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -70.17 374.71 -2.44 -72.62 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: -0.49 Total: 30.96 kcal Atomic # 6 Polarization: -67.84 SS G_CDS: 4.17 Total: -63.68 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -0.58 Total: -77.26 kcal Atomic # 8 Polarization: -90.40 SS G_CDS: -6.01 Total: -96.42 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Atomic # 16 Polarization: 92.47 SS G_CDS: -1.55 Total: 90.92 kcal Total: -70.17 -2.44 -72.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830657917.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.478 kcal (2) G-P(sol) polarization free energy of solvation -70.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds