Wall clock time and date at job start Wed Apr 1 2020 04:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46995 * 2 1 4 4 C 1.50702 * 109.47214 * 239.99896 * 2 1 3 5 5 O 1.21285 * 119.99956 * 240.00088 * 4 2 1 6 6 N 1.34774 * 119.99956 * 59.99623 * 4 2 1 7 7 S 1.65595 * 119.99978 * 180.02562 * 6 4 2 8 8 O 1.42102 * 104.27671 * 181.07352 * 7 6 4 9 9 O 1.42097 * 104.27720 * 308.92895 * 7 6 4 10 10 C 1.81395 * 104.45064 * 65.00131 * 7 6 4 11 11 C 1.50703 * 109.47414 * 180.02562 * 10 7 6 12 12 H 1.08003 * 119.99472 * 0.02562 * 11 10 7 13 13 C 1.37872 * 120.00556 * 180.02562 * 11 10 7 14 14 N 1.31515 * 119.99743 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00303 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47153 * 0.02562 * 15 13 11 17 17 H 1.48510 * 109.47353 * 119.99899 * 15 13 11 18 18 H 1.48495 * 109.47220 * 239.99753 * 15 13 11 19 19 C 1.50703 * 109.47121 * 119.99601 * 2 1 3 20 20 C 1.39373 * 119.50193 * 60.00267 * 19 2 1 21 21 C 1.36095 * 120.98824 * 179.97438 * 20 19 2 22 22 C 1.40546 * 119.65123 * 359.97438 * 21 20 19 23 23 C 1.40538 * 121.28195 * 180.02562 * 22 21 20 24 24 C 1.36099 * 119.65130 * 179.97438 * 23 22 21 25 25 C 1.39379 * 120.98764 * 359.97438 * 24 23 22 26 26 C 1.36085 * 120.98780 * 359.97438 * 25 24 23 27 27 C 1.40537 * 119.65749 * 0.02562 * 26 25 24 28 28 C 1.36086 * 119.50505 * 239.97572 * 19 2 1 29 29 H 1.09000 * 109.47196 * 60.00009 * 1 2 3 30 30 H 1.09003 * 109.47451 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47092 * 300.00239 * 1 2 3 32 32 H 0.97002 * 120.00135 * 0.02562 * 6 4 2 33 33 H 1.09002 * 109.47245 * 299.99654 * 10 7 6 34 34 H 1.09004 * 109.47295 * 60.00280 * 10 7 6 35 35 H 0.97000 * 120.00209 * 179.97438 * 14 13 11 36 36 H 1.07999 * 119.51069 * 0.02562 * 20 19 2 37 37 H 1.07998 * 120.17687 * 179.72646 * 21 20 19 38 38 H 1.07996 * 120.17519 * 359.97438 * 23 22 21 39 39 H 1.08000 * 119.50460 * 180.02562 * 24 23 22 40 40 H 1.07995 * 119.49947 * 179.97438 * 25 24 23 41 41 H 1.08001 * 120.17314 * 180.02562 * 26 25 24 42 42 H 1.07996 * 120.17534 * 0.04866 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1191 6 7 1.7067 -0.2500 -2.4545 7 16 2.2582 -1.0311 -3.8066 8 8 1.7471 -0.2634 -4.8877 9 8 3.6576 -1.1551 -3.5934 10 6 1.4586 -2.6582 -3.7473 11 6 1.8876 -3.4727 -4.9404 12 1 2.5732 -3.0534 -5.6620 13 6 1.4051 -4.7529 -5.1109 14 7 0.5707 -5.2635 -4.2319 15 14 1.9364 -5.7621 -6.5903 16 1 2.8735 -4.9653 -7.4223 17 1 2.6155 -6.9991 -6.1276 18 1 0.7433 -6.1245 -7.3966 19 6 2.0323 -0.7103 1.2305 20 6 1.6893 -2.0447 1.4408 21 6 2.1266 -2.7156 2.5413 22 6 2.9368 -2.0559 3.4814 23 6 3.4078 -2.7157 4.6294 24 6 4.1909 -2.0450 5.5178 25 6 4.5347 -0.7109 5.3069 26 6 4.0979 -0.0403 4.2062 27 6 3.2873 -0.6997 3.2664 28 6 2.8145 -0.0394 2.1194 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.1493 0.5388 -2.5436 33 1 1.7507 -3.1734 -2.8322 34 1 0.3760 -2.5319 -3.7635 35 1 0.2309 -6.1641 -4.3520 36 1 1.0679 -2.5543 0.7194 37 1 1.8492 -3.7482 2.6934 38 1 3.1498 -3.7495 4.8056 39 1 4.5519 -2.5545 6.3990 40 1 5.1571 -0.2018 6.0278 41 1 4.3726 0.9932 4.0557 42 1 3.0719 0.9946 1.9435 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835409885.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:09 Heat of formation + Delta-G solvation = -78.572062 kcal Electronic energy + Delta-G solvation = -27644.989875 eV Core-core repulsion = 23681.529885 eV Total energy + Delta-G solvation = -3963.459989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.79828 -39.74554 -36.93014 -36.23572 -35.18338 -34.39308 -33.47585 -33.36737 -32.53623 -29.70357 -29.07401 -28.96442 -25.12867 -23.60393 -23.43075 -22.92051 -22.01158 -20.65216 -19.26791 -17.82771 -17.31264 -17.26327 -16.64585 -16.47368 -16.25449 -15.62488 -14.97505 -14.83974 -14.77995 -14.52241 -14.23571 -14.11364 -13.83595 -13.57153 -13.41752 -12.95665 -12.64666 -12.56646 -12.33282 -12.20299 -12.13800 -11.90071 -11.47676 -11.46570 -11.30668 -11.24998 -11.20566 -10.99167 -10.94598 -10.85127 -10.65714 -10.47995 -10.07500 -9.90061 -9.74265 -9.18352 -8.72829 -8.57187 -7.94483 -6.34949 -4.45664 0.47046 0.91398 1.05264 2.00021 2.36998 2.87555 3.19697 3.20787 3.27486 3.33827 4.03204 4.20823 4.29950 4.34582 4.54752 4.63722 4.73778 4.82044 4.87047 4.92391 4.98137 5.07280 5.09273 5.17215 5.25593 5.30046 5.33849 5.40075 5.51547 5.60182 5.68684 5.87362 5.91354 6.02234 6.16552 6.17902 6.35060 6.53032 6.55059 6.56998 6.73591 6.75992 6.92738 7.00194 7.40847 7.70976 7.76584 8.55430 9.21788 10.76902 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.014480 B = 0.002910 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.196275 B = 9620.269261 C =10643.164759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.074 4.074 3 H 0.112 0.888 4 C 0.535 3.465 5 O -0.476 6.476 6 N -1.060 6.060 7 S 2.552 3.448 8 O -0.969 6.969 9 O -0.952 6.952 10 C -0.403 4.403 11 C -0.534 4.534 12 H 0.071 0.929 13 C 0.077 3.923 14 N -0.877 5.877 15 Si 0.907 3.093 16 H -0.266 1.266 17 H -0.277 1.277 18 H -0.277 1.277 19 C -0.059 4.059 20 C -0.080 4.080 21 C -0.108 4.108 22 C -0.049 4.049 23 C -0.105 4.105 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.104 4.104 27 C -0.052 4.052 28 C -0.101 4.101 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.424 0.576 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.268 0.732 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.822 10.824 18.845 21.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.097 4.097 3 H 0.130 0.870 4 C 0.320 3.680 5 O -0.345 6.345 6 N -0.819 5.819 7 S 2.655 3.345 8 O -0.960 6.960 9 O -0.943 6.943 10 C -0.540 4.540 11 C -0.573 4.573 12 H 0.089 0.911 13 C -0.129 4.129 14 N -0.513 5.513 15 Si 0.732 3.268 16 H -0.190 1.190 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.059 4.059 20 C -0.098 4.098 21 C -0.126 4.126 22 C -0.049 4.049 23 C -0.123 4.123 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.122 4.122 27 C -0.052 4.052 28 C -0.119 4.119 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.258 0.742 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.143 0.857 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.228 10.367 18.384 21.107 hybrid contribution -0.435 -0.513 -0.494 0.834 sum -0.206 9.854 17.891 20.426 Atomic orbital electron populations 1.21845 0.91278 1.03932 1.03283 1.20458 0.98382 1.00489 0.90421 0.86991 1.20370 0.78802 0.84305 0.84555 1.90940 1.33419 1.24078 1.86086 1.55492 1.62134 1.41611 1.22705 1.07146 0.76121 0.79201 0.72033 1.93519 1.81501 1.70453 1.50551 1.93533 1.29948 1.87244 1.83540 1.27600 1.07745 1.11298 1.07390 1.20323 1.30469 0.99975 1.06554 0.91121 1.24911 0.94015 0.97052 0.96932 1.69958 1.30096 1.16327 1.34896 0.86286 0.78883 0.79938 0.81657 1.18966 1.20265 1.20307 1.19042 0.97961 0.94402 0.94543 1.20725 0.98870 0.93506 0.96706 1.20995 0.97729 0.99788 0.94089 1.18131 0.98044 0.93281 0.95401 1.21054 0.97828 0.99728 0.93655 1.20821 0.98755 0.94841 0.99560 1.20801 1.00475 0.94880 0.97922 1.20998 0.97472 0.99714 0.94050 1.18004 0.98450 0.93380 0.95397 1.20828 0.97550 0.99713 0.93793 0.91178 0.91088 0.90766 0.74203 0.88387 0.89709 0.92216 0.85552 0.85354 0.85631 0.86209 0.86224 0.85738 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.90 37.16 0.33 -0.94 16 2 C -0.07 -0.83 2.88 -92.92 -0.27 -1.10 16 3 H 0.11 0.92 7.82 -51.93 -0.41 0.52 16 4 C 0.53 8.50 6.75 -10.99 -0.07 8.43 16 5 O -0.48 -9.71 13.18 -11.59 -0.15 -9.87 16 6 N -1.06 -16.34 5.50 31.22 0.17 -16.17 16 7 S 2.55 54.69 5.03 -107.50 -0.54 54.15 16 8 O -0.97 -21.90 18.08 -57.54 -1.04 -22.95 16 9 O -0.95 -23.74 17.04 -64.79 -1.10 -24.84 16 10 C -0.40 -9.89 5.64 36.01 0.20 -9.69 16 11 C -0.53 -14.89 9.13 -34.44 -0.31 -15.20 16 12 H 0.07 1.94 7.71 -52.48 -0.40 1.53 16 13 C 0.08 2.15 5.46 -17.82 -0.10 2.05 16 14 N -0.88 -24.81 13.29 55.43 0.74 -24.08 16 15 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 C -0.06 -0.74 4.36 -104.97 -0.46 -1.20 16 20 C -0.08 -1.09 7.81 -39.93 -0.31 -1.40 16 21 C -0.11 -1.38 9.77 -39.48 -0.39 -1.76 16 22 C -0.05 -0.61 5.74 -106.83 -0.61 -1.22 16 23 C -0.10 -1.11 9.77 -39.48 -0.39 -1.49 16 24 C -0.12 -1.14 9.95 -39.93 -0.40 -1.53 16 25 C -0.12 -1.12 9.95 -39.93 -0.40 -1.52 16 26 C -0.10 -1.05 9.77 -39.49 -0.39 -1.44 16 27 C -0.05 -0.63 5.74 -106.83 -0.61 -1.25 16 28 C -0.10 -1.17 9.37 -39.48 -0.37 -1.54 16 29 H 0.07 0.49 7.56 -51.93 -0.39 0.10 16 30 H 0.07 0.68 7.34 -51.93 -0.38 0.30 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.42 4.59 8.21 -34.47 -0.28 4.31 16 33 H 0.10 2.51 7.19 -51.92 -0.37 2.14 16 34 H 0.08 1.99 8.14 -51.92 -0.42 1.56 16 35 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.13 1.74 7.44 -52.49 -0.39 1.35 16 37 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 40 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.13 1.13 7.89 -52.49 -0.41 0.71 16 LS Contribution 370.00 15.07 5.58 5.58 Total: -1.00 -37.04 370.00 -11.05 -48.10 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.14 Total: 4.77 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: -4.54 Total: -30.80 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.91 Total: -40.25 kcal Atomic # 8 Polarization: -55.36 SS G_CDS: -2.30 Total: -57.66 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 54.69 SS G_CDS: -0.54 Total: 54.15 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.04 -11.05 -48.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835409885.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.477 kcal (2) G-P(sol) polarization free energy of solvation -37.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds