Wall clock time and date at job start Wed Apr 1 2020 04:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46995 * 2 1 4 4 C 1.50702 * 109.47214 * 239.99896 * 2 1 3 5 5 O 1.21285 * 119.99956 * 240.00088 * 4 2 1 6 6 N 1.34774 * 119.99956 * 59.99623 * 4 2 1 7 7 S 1.65595 * 119.99978 * 180.02562 * 6 4 2 8 8 O 1.42102 * 104.27671 * 181.07352 * 7 6 4 9 9 O 1.42097 * 104.27720 * 308.92895 * 7 6 4 10 10 C 1.81395 * 104.45064 * 65.00131 * 7 6 4 11 11 C 1.50703 * 109.47414 * 180.02562 * 10 7 6 12 12 H 1.08003 * 119.99472 * 0.02562 * 11 10 7 13 13 C 1.37872 * 120.00556 * 180.02562 * 11 10 7 14 14 N 1.31515 * 119.99743 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00303 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47153 * 0.02562 * 15 13 11 17 17 H 1.48510 * 109.47353 * 119.99899 * 15 13 11 18 18 H 1.48495 * 109.47220 * 239.99753 * 15 13 11 19 19 C 1.50703 * 109.47121 * 119.99601 * 2 1 3 20 20 C 1.39373 * 119.50193 * 60.00267 * 19 2 1 21 21 C 1.36095 * 120.98824 * 179.97438 * 20 19 2 22 22 C 1.40546 * 119.65123 * 359.97438 * 21 20 19 23 23 C 1.40538 * 121.28195 * 180.02562 * 22 21 20 24 24 C 1.36099 * 119.65130 * 179.97438 * 23 22 21 25 25 C 1.39379 * 120.98764 * 359.97438 * 24 23 22 26 26 C 1.36085 * 120.98780 * 359.97438 * 25 24 23 27 27 C 1.40537 * 119.65749 * 0.02562 * 26 25 24 28 28 C 1.36086 * 119.50505 * 239.97572 * 19 2 1 29 29 H 1.09000 * 109.47196 * 60.00009 * 1 2 3 30 30 H 1.09003 * 109.47451 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47092 * 300.00239 * 1 2 3 32 32 H 0.97002 * 120.00135 * 0.02562 * 6 4 2 33 33 H 1.09002 * 109.47245 * 299.99654 * 10 7 6 34 34 H 1.09004 * 109.47295 * 60.00280 * 10 7 6 35 35 H 0.97000 * 120.00209 * 179.97438 * 14 13 11 36 36 H 1.07999 * 119.51069 * 0.02562 * 20 19 2 37 37 H 1.07998 * 120.17687 * 179.72646 * 21 20 19 38 38 H 1.07996 * 120.17519 * 359.97438 * 23 22 21 39 39 H 1.08000 * 119.50460 * 180.02562 * 24 23 22 40 40 H 1.07995 * 119.49947 * 179.97438 * 25 24 23 41 41 H 1.08001 * 120.17314 * 180.02562 * 26 25 24 42 42 H 1.07996 * 120.17534 * 0.04866 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1191 6 7 1.7067 -0.2500 -2.4545 7 16 2.2582 -1.0311 -3.8066 8 8 1.7471 -0.2634 -4.8877 9 8 3.6576 -1.1551 -3.5934 10 6 1.4586 -2.6582 -3.7473 11 6 1.8876 -3.4727 -4.9404 12 1 2.5732 -3.0534 -5.6620 13 6 1.4051 -4.7529 -5.1109 14 7 0.5707 -5.2635 -4.2319 15 14 1.9364 -5.7621 -6.5903 16 1 2.8735 -4.9653 -7.4223 17 1 2.6155 -6.9991 -6.1276 18 1 0.7433 -6.1245 -7.3966 19 6 2.0323 -0.7103 1.2305 20 6 1.6893 -2.0447 1.4408 21 6 2.1266 -2.7156 2.5413 22 6 2.9368 -2.0559 3.4814 23 6 3.4078 -2.7157 4.6294 24 6 4.1909 -2.0450 5.5178 25 6 4.5347 -0.7109 5.3069 26 6 4.0979 -0.0403 4.2062 27 6 3.2873 -0.6997 3.2664 28 6 2.8145 -0.0394 2.1194 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.1493 0.5388 -2.5436 33 1 1.7507 -3.1734 -2.8322 34 1 0.3760 -2.5319 -3.7635 35 1 0.2309 -6.1641 -4.3520 36 1 1.0679 -2.5543 0.7194 37 1 1.8492 -3.7482 2.6934 38 1 3.1498 -3.7495 4.8056 39 1 4.5519 -2.5545 6.3990 40 1 5.1571 -0.2018 6.0278 41 1 4.3726 0.9932 4.0557 42 1 3.0719 0.9946 1.9435 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835409885.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:08 Heat of formation + Delta-G solvation = -103.519604 kcal Electronic energy + Delta-G solvation = -27646.071681 eV Core-core repulsion = 23681.529885 eV Total energy + Delta-G solvation = -3964.541796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.82953 -40.82810 -38.16903 -37.73053 -37.05743 -35.75915 -35.43888 -34.43085 -33.35672 -31.11539 -30.53436 -29.76384 -26.09819 -25.57700 -24.30169 -23.97073 -22.83155 -21.75522 -20.83984 -19.33142 -18.82755 -18.33748 -18.13782 -17.58835 -17.48558 -17.10814 -16.54963 -16.27666 -16.06046 -15.73168 -15.58218 -15.08090 -14.73768 -14.54611 -14.42295 -14.19057 -14.13333 -13.80154 -13.70217 -13.50031 -13.37483 -13.21095 -13.10433 -13.05499 -12.94627 -12.77541 -12.58636 -12.25006 -12.09988 -12.03566 -11.82597 -11.77051 -11.65558 -11.22353 -11.04188 -10.83354 -10.80862 -9.43410 -8.77407 -8.44805 -6.63562 -0.75366 -0.34367 0.08808 1.08472 1.15966 1.35257 1.36477 1.50650 1.61225 2.09520 2.28266 2.75297 2.89500 3.10790 3.27933 3.37507 3.49828 3.74578 3.96592 4.01373 4.07960 4.11565 4.15798 4.32687 4.39186 4.46711 4.52567 4.62583 4.64514 4.73761 4.84582 4.88011 4.92416 5.05200 5.18041 5.27313 5.29311 5.34159 5.36961 5.57384 5.65890 5.66373 5.69553 5.76510 5.95273 6.13923 6.45159 6.51862 7.08123 8.68235 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.014480 B = 0.002910 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.196275 B = 9620.269261 C =10643.164759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.061 4.061 3 H 0.153 0.847 4 C 0.531 3.469 5 O -0.525 6.525 6 N -1.039 6.039 7 S 2.598 3.402 8 O -0.979 6.979 9 O -0.987 6.987 10 C -0.420 4.420 11 C -0.567 4.567 12 H 0.066 0.934 13 C 0.026 3.974 14 N -0.906 5.906 15 Si 0.966 3.034 16 H -0.262 1.262 17 H -0.270 1.270 18 H -0.262 1.262 19 C -0.079 4.079 20 C -0.101 4.101 21 C -0.124 4.124 22 C -0.070 4.070 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.124 4.124 26 C -0.111 4.111 27 C -0.075 4.075 28 C -0.097 4.097 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.448 0.552 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.274 0.726 36 H 0.109 0.891 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.437 12.961 20.064 23.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 H 0.171 0.829 4 C 0.318 3.682 5 O -0.397 6.397 6 N -0.806 5.806 7 S 2.698 3.302 8 O -0.969 6.969 9 O -0.977 6.977 10 C -0.555 4.555 11 C -0.606 4.606 12 H 0.084 0.916 13 C -0.178 4.178 14 N -0.543 5.543 15 Si 0.788 3.212 16 H -0.186 1.186 17 H -0.195 1.195 18 H -0.186 1.186 19 C -0.080 4.080 20 C -0.119 4.119 21 C -0.142 4.142 22 C -0.070 4.070 23 C -0.142 4.142 24 C -0.137 4.137 25 C -0.142 4.142 26 C -0.129 4.129 27 C -0.075 4.075 28 C -0.115 4.115 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.117 0.883 32 H 0.288 0.712 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.127 0.873 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.164 0.836 40 H 0.167 0.833 41 H 0.168 0.832 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.574 12.516 19.589 23.254 hybrid contribution -0.530 -1.139 -0.688 1.433 sum 0.044 11.377 18.901 22.061 Atomic orbital electron populations 1.21930 0.89335 1.03569 1.05545 1.20574 0.99790 1.01336 0.86706 0.82905 1.21417 0.77552 0.83691 0.85500 1.90929 1.35813 1.26457 1.86520 1.54904 1.62391 1.42023 1.21258 1.05445 0.74735 0.77542 0.72455 1.93497 1.81506 1.69804 1.52142 1.93486 1.32162 1.87487 1.84606 1.27649 1.08336 1.14148 1.05349 1.20744 1.30881 1.01251 1.07738 0.91570 1.25852 0.93919 0.98180 0.99831 1.70037 1.30841 1.16950 1.36460 0.85377 0.79094 0.78369 0.78322 1.18587 1.19470 1.18643 1.19193 0.99050 0.94132 0.95601 1.20763 0.99671 0.94668 0.96840 1.21162 0.98337 1.00245 0.94463 1.18400 0.98436 0.94104 0.96036 1.21286 0.98676 1.00599 0.93652 1.21217 0.97456 0.95197 0.99793 1.21225 1.00027 0.94831 0.98096 1.21329 0.96857 1.00950 0.93719 1.18366 0.99245 0.93474 0.96378 1.21186 0.96175 1.00998 0.93098 0.89049 0.92874 0.88336 0.71245 0.90468 0.89442 0.91670 0.87300 0.84963 0.84551 0.83616 0.83277 0.83220 0.82449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.90 71.98 0.64 -1.62 16 2 C -0.06 -1.26 2.88 -12.28 -0.04 -1.29 16 3 H 0.15 1.89 7.82 -2.39 -0.02 1.87 16 4 C 0.53 16.73 6.75 87.66 0.59 17.32 16 5 O -0.52 -22.26 13.18 13.35 0.18 -22.08 16 6 N -1.04 -31.14 5.50 -173.53 -0.95 -32.10 16 7 S 2.60 112.33 5.03 -56.49 -0.28 112.05 16 8 O -0.98 -43.68 18.08 -127.65 -2.31 -45.99 16 9 O -0.99 -50.03 17.04 -120.71 -2.06 -52.09 16 10 C -0.42 -21.44 5.64 71.24 0.40 -21.04 16 11 C -0.57 -32.60 9.13 25.60 0.23 -32.37 16 12 H 0.07 3.74 7.71 -2.91 -0.02 3.71 16 13 C 0.03 1.45 5.46 84.65 0.46 1.91 16 14 N -0.91 -52.62 13.29 21.45 0.28 -52.33 16 15 Si 0.97 43.58 29.54 68.60 2.03 45.60 16 16 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 19 C -0.08 -1.96 4.36 -20.09 -0.09 -2.05 16 20 C -0.10 -2.92 7.81 22.04 0.17 -2.75 16 21 C -0.12 -3.39 9.77 22.33 0.22 -3.17 16 22 C -0.07 -1.77 5.74 -21.30 -0.12 -1.89 16 23 C -0.12 -2.57 9.77 22.33 0.22 -2.35 16 24 C -0.12 -1.97 9.95 22.05 0.22 -1.75 16 25 C -0.12 -1.92 9.95 22.04 0.22 -1.70 16 26 C -0.11 -1.95 9.77 22.33 0.22 -1.73 16 27 C -0.07 -1.73 5.74 -21.30 -0.12 -1.85 16 28 C -0.10 -2.08 9.37 22.33 0.21 -1.88 16 29 H 0.09 1.00 7.56 -2.39 -0.02 0.99 16 30 H 0.05 1.02 7.34 -2.39 -0.02 1.00 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.45 8.64 8.21 -96.75 -0.79 7.84 16 33 H 0.08 4.22 7.19 -2.39 -0.02 4.20 16 34 H 0.09 4.28 8.14 -2.39 -0.02 4.26 16 35 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 36 H 0.11 3.36 7.44 -2.91 -0.02 3.34 16 37 H 0.13 3.22 8.06 -2.91 -0.02 3.19 16 38 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 39 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 40 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 41 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 42 H 0.16 2.24 7.89 -2.91 -0.02 2.22 16 Total: -1.00 -83.35 370.00 0.58 -82.77 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.26 Total: 22.38 kcal Atomic # 6 Polarization: -61.64 SS G_CDS: 3.44 Total: -58.21 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -0.67 Total: -84.43 kcal Atomic # 8 Polarization: -115.97 SS G_CDS: -4.19 Total: -120.16 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 112.33 SS G_CDS: -0.28 Total: 112.05 kcal Total: -83.35 0.58 -82.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835409885.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.750 kcal (2) G-P(sol) polarization free energy of solvation -83.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds