Wall clock time and date at job start Wed Apr 1 2020 04:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47416 * 2 1 4 4 C 1.53006 * 109.47486 * 180.02562 * 3 2 1 5 5 C 1.50694 * 109.47013 * 180.02562 * 4 3 2 6 6 N 1.29021 * 124.91800 * 90.00403 * 5 4 3 7 7 C 1.31783 * 117.13075 * 179.97438 * 6 5 4 8 8 C 1.50695 * 122.75640 * 179.97438 * 7 6 5 9 9 S 1.81391 * 109.47313 * 89.99891 * 8 7 6 10 10 O 1.42105 * 108.57942 * 294.48966 * 9 8 7 11 11 O 1.42097 * 108.57959 * 65.51495 * 9 8 7 12 12 C 1.81398 * 101.92304 * 180.02562 * 9 8 7 13 13 C 1.53004 * 109.47358 * 179.97438 * 12 9 8 14 14 O 1.42902 * 109.47009 * 179.97438 * 13 12 9 15 15 C 1.42900 * 113.99621 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.46986 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00300 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99987 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00003 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99875 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47348 * 60.00265 * 20 18 16 22 22 H 1.48505 * 109.47037 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47432 * 299.99861 * 20 18 16 24 24 C 1.33646 * 114.49504 * 0.23014 * 7 6 5 25 25 S 1.70979 * 124.91545 * 269.99474 * 5 4 3 26 26 H 1.09003 * 109.47013 * 300.00041 * 1 2 3 27 27 H 1.09001 * 109.47151 * 59.99757 * 1 2 3 28 28 H 1.09000 * 109.47475 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47013 * 239.99959 * 2 1 3 30 30 H 1.09001 * 109.47151 * 120.00243 * 2 1 3 31 31 H 1.09003 * 109.47063 * 59.99989 * 3 2 1 32 32 H 1.09001 * 109.47159 * 300.00238 * 3 2 1 33 33 H 1.08994 * 109.46732 * 59.99833 * 4 3 2 34 34 H 1.09003 * 109.46665 * 299.99998 * 4 3 2 35 35 H 1.09003 * 109.46853 * 329.99374 * 8 7 6 36 36 H 1.09003 * 109.47076 * 210.00618 * 8 7 6 37 37 H 1.08998 * 109.47096 * 300.00087 * 12 9 8 38 38 H 1.09006 * 109.47169 * 59.99793 * 12 9 8 39 39 H 1.08998 * 109.47355 * 300.00255 * 13 12 9 40 40 H 1.09001 * 109.46568 * 60.00607 * 13 12 9 41 41 H 1.08999 * 109.47405 * 300.00353 * 15 14 13 42 42 H 1.09007 * 109.46763 * 60.00709 * 15 14 13 43 43 H 0.97008 * 119.99811 * 180.02562 * 19 18 16 44 44 H 1.07997 * 126.03396 * 179.76654 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0723 2.8633 0.0000 6 7 4.3190 3.5589 1.0582 7 6 4.7546 4.7899 0.8802 8 6 5.0812 5.7129 2.0258 9 16 6.8244 5.5127 2.4855 10 8 7.0100 4.1998 2.9965 11 8 7.6318 5.9567 1.4038 12 6 6.9892 6.6931 3.8531 13 6 8.4246 6.6637 4.3821 14 8 8.5545 7.5940 5.4590 15 6 9.8642 7.6448 6.0282 16 6 9.8861 8.6522 7.1488 17 1 8.9894 9.1987 7.4013 18 6 11.0509 8.8763 7.8517 19 7 12.1429 8.2112 7.5439 20 14 11.0778 10.1245 9.2412 21 1 10.1003 9.7245 10.2850 22 1 12.4393 10.1784 9.8319 23 1 10.7157 11.4635 8.7109 24 6 4.8779 5.1544 -0.3996 25 16 4.3980 3.7867 -1.4016 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9329 0.9288 -0.8908 34 1 3.9337 0.9285 0.8892 35 1 4.4497 5.4691 2.8802 36 1 4.9011 6.7446 1.7238 37 1 6.7531 7.6961 3.4977 38 1 6.3016 6.4200 4.6536 39 1 8.6604 5.6606 4.7375 40 1 9.1123 6.9366 3.5817 41 1 10.1293 6.6621 6.4183 42 1 10.5823 7.9374 5.2620 43 1 12.9624 8.3686 8.0387 44 1 5.2136 6.1167 -0.7566 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840931014.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:53 Heat of formation + Delta-G solvation = -121.708216 kcal Electronic energy + Delta-G solvation = -24701.238803 eV Core-core repulsion = 20871.352240 eV Total energy + Delta-G solvation = -3829.886562 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.106 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.09346 -38.84098 -38.14904 -37.18969 -36.90838 -35.07115 -33.81819 -32.85573 -31.19293 -29.33747 -29.02184 -26.41027 -24.86960 -24.31362 -23.21799 -21.97156 -20.89429 -20.02817 -18.98522 -18.68236 -18.33171 -17.53704 -17.31627 -16.91012 -16.61937 -16.46960 -16.37643 -16.13795 -15.78074 -15.24818 -14.86086 -14.70585 -14.60389 -14.48361 -14.03712 -14.00009 -13.71675 -13.25627 -13.18520 -13.16937 -13.06005 -12.97718 -12.69478 -12.66406 -12.55962 -12.38457 -12.19542 -12.11953 -12.09392 -11.89396 -11.76091 -11.45270 -11.35158 -10.95722 -10.73711 -10.49906 -10.38724 -9.79324 -8.34982 -6.49155 -1.31006 -0.37039 0.26610 0.58527 1.39949 1.45131 1.53709 1.55205 1.70079 2.28608 2.40403 2.82353 2.97479 2.98915 3.14976 3.50393 3.68300 3.70239 3.83304 3.99703 4.01986 4.11852 4.18538 4.31374 4.34239 4.40672 4.45195 4.51346 4.64886 4.69212 4.73846 4.83759 4.89676 4.96757 5.03714 5.07553 5.11807 5.28429 5.38595 5.48514 5.49805 5.87810 6.37895 6.59567 6.70506 7.22363 8.77236 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.025039 B = 0.001712 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.004248 B =16350.060572 C =16897.550954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.107 4.107 4 C -0.048 4.048 5 C 0.039 3.961 6 N -0.494 5.494 7 C 0.037 3.963 8 C -0.510 4.510 9 S 2.422 3.578 10 O -0.969 6.969 11 O -0.963 6.963 12 C -0.601 4.601 13 C 0.054 3.946 14 O -0.395 6.395 15 C 0.199 3.801 16 C -0.554 4.554 17 H 0.068 0.932 18 C 0.005 3.995 19 N -0.930 5.930 20 Si 0.989 3.011 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.263 1.263 24 C -0.248 4.248 25 S 0.185 5.815 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.174 0.826 36 H 0.195 0.805 37 H 0.169 0.831 38 H 0.162 0.838 39 H 0.051 0.949 40 H 0.055 0.945 41 H -0.010 1.010 42 H -0.008 1.008 43 H 0.272 0.728 44 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.915 -11.947 -21.668 35.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.146 4.146 4 C -0.089 4.089 5 C -0.239 4.239 6 N -0.209 5.209 7 C -0.096 4.096 8 C -0.643 4.643 9 S 2.607 3.393 10 O -0.966 6.966 11 O -0.960 6.960 12 C -0.729 4.729 13 C -0.024 4.024 14 O -0.315 6.315 15 C 0.124 3.876 16 C -0.591 4.591 17 H 0.086 0.914 18 C -0.193 4.193 19 N -0.569 5.569 20 Si 0.811 3.189 21 H -0.189 1.189 22 H -0.200 1.200 23 H -0.188 1.188 24 C -0.390 4.390 25 S 0.442 5.558 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.128 0.872 34 H 0.109 0.891 35 H 0.192 0.808 36 H 0.212 0.788 37 H 0.187 0.813 38 H 0.180 0.820 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.008 0.992 42 H 0.010 0.990 43 H 0.081 0.919 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -24.344 -12.855 -22.481 35.543 hybrid contribution 0.470 1.352 1.778 2.282 sum -23.874 -11.503 -20.703 33.629 Atomic orbital electron populations 1.21775 0.95482 1.02065 1.01824 1.21513 0.96204 0.95396 1.02867 1.21578 0.92154 0.98331 1.02563 1.20524 0.96956 0.85941 1.05499 1.27570 1.02151 1.02975 0.91222 1.66042 1.15525 1.05886 1.33417 1.19245 1.05402 0.91652 0.93314 1.28798 1.21486 1.08346 1.05687 1.07940 0.79170 0.75786 0.76373 1.93547 1.85534 1.36820 1.80730 1.93535 1.66756 1.82930 1.52771 1.30374 1.03594 1.19824 1.19127 1.22105 0.94874 0.94138 0.91289 1.87826 1.33500 1.60966 1.49173 1.20017 0.79310 0.95783 0.92517 1.21354 0.97616 1.23312 1.16854 0.91373 1.26041 0.94195 0.98649 1.00461 1.70076 1.01638 1.42722 1.42452 0.85153 0.77723 0.78345 0.77675 1.18875 1.20045 1.18763 1.27472 1.09131 1.06661 0.95729 1.83784 1.58113 1.03229 1.10702 0.93253 0.92354 0.92112 0.90594 0.91871 0.92608 0.90926 0.87168 0.89094 0.80791 0.78796 0.81300 0.81980 0.93112 0.92662 0.99245 0.99043 0.91918 0.77332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 71.98 0.71 -0.51 16 2 C -0.12 -0.99 5.93 30.59 0.18 -0.81 16 3 C -0.11 -1.11 5.20 30.60 0.16 -0.95 16 4 C -0.05 -0.60 5.80 29.85 0.17 -0.43 16 5 C 0.04 0.71 6.64 88.52 0.59 1.30 16 6 N -0.49 -11.56 10.53 -179.41 -1.89 -13.45 16 7 C 0.04 0.76 6.00 41.52 0.25 1.01 16 8 C -0.51 -7.91 6.23 71.23 0.44 -7.47 16 9 S 2.42 61.21 4.70 -56.49 -0.27 60.95 16 10 O -0.97 -33.11 18.10 -127.37 -2.30 -35.41 16 11 O -0.96 -29.60 18.10 -127.37 -2.31 -31.91 16 12 C -0.60 -15.17 6.17 71.98 0.44 -14.73 16 13 C 0.05 2.10 5.95 71.98 0.43 2.53 16 14 O -0.39 -19.47 10.33 -148.98 -1.54 -21.01 16 15 C 0.20 11.46 5.69 71.23 0.41 11.87 16 16 C -0.55 -33.20 9.43 25.60 0.24 -32.96 16 17 H 0.07 3.96 7.81 -2.91 -0.02 3.94 16 18 C 0.01 0.31 5.46 84.65 0.46 0.77 16 19 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 20 Si 0.99 44.21 29.54 68.60 2.03 46.23 16 21 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 24 C -0.25 -4.17 11.13 66.78 0.74 -3.42 16 25 S 0.19 2.60 23.18 -56.49 -1.31 1.29 16 26 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.62 16 33 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.17 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.19 1.20 8.12 -2.39 -0.02 1.18 16 37 H 0.17 3.19 8.14 -2.39 -0.02 3.17 16 38 H 0.16 3.34 8.14 -2.39 -0.02 3.32 16 39 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 41 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 42 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 43 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 44 H 0.21 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -85.46 401.19 -1.10 -86.55 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 0.97 Total: 6.79 kcal Atomic # 6 Polarization: -49.04 SS G_CDS: 5.23 Total: -43.81 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: -1.60 Total: -69.67 kcal Atomic # 8 Polarization: -82.18 SS G_CDS: -6.15 Total: -88.33 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 63.81 SS G_CDS: -1.57 Total: 62.24 kcal Total: -85.46 -1.10 -86.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840931014.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.156 kcal (2) G-P(sol) polarization free energy of solvation -85.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds