Wall clock time and date at job start Wed Apr 1 2020 04:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 C 1.50698 * 109.47184 * 239.99667 * 2 1 3 6 6 C 1.33648 * 122.74502 * 75.00369 * 5 2 1 7 7 S 1.76196 * 107.92039 * 180.02562 * 6 5 2 8 8 C 1.70972 * 90.28429 * 0.02562 * 7 6 5 9 9 C 1.50703 * 124.91750 * 180.02562 * 8 7 6 10 10 S 1.81401 * 109.46816 * 270.02456 * 9 8 7 11 11 O 1.42108 * 108.57816 * 294.48361 * 10 9 8 12 12 O 1.42104 * 108.58082 * 65.50775 * 10 9 8 13 13 C 1.81400 * 101.92072 * 179.97438 * 10 9 8 14 14 C 1.53002 * 109.47259 * 179.97438 * 13 10 9 15 15 O 1.42899 * 109.47509 * 180.02562 * 14 13 10 16 16 C 1.42895 * 114.00255 * 179.97438 * 15 14 13 17 17 C 1.50704 * 109.47059 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99798 * 0.02562 * 17 16 15 19 19 C 1.37872 * 119.99847 * 180.02562 * 17 16 15 20 20 N 1.31520 * 120.00057 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00009 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47255 * 60.00121 * 21 19 17 23 23 H 1.48506 * 109.47174 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47370 * 300.00157 * 21 19 17 25 25 N 1.29029 * 110.16899 * 359.73076 * 8 7 6 26 26 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 29 29 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 30 30 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 32 32 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 33 33 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 35 35 H 1.07999 * 126.03855 * 0.02562 * 6 5 2 36 36 H 1.09000 * 109.46815 * 30.01820 * 9 8 7 37 37 H 1.08997 * 109.47667 * 150.02363 * 9 8 7 38 38 H 1.09001 * 109.47516 * 299.99797 * 13 10 9 39 39 H 1.09002 * 109.47132 * 60.00325 * 13 10 9 40 40 H 1.09008 * 109.46793 * 299.99966 * 14 13 10 41 41 H 1.08999 * 109.47222 * 59.99659 * 14 13 10 42 42 H 1.09000 * 109.47313 * 299.99790 * 16 15 14 43 43 H 1.09003 * 109.46947 * 59.99602 * 16 15 14 44 44 H 0.97008 * 119.99835 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0324 -0.7105 -1.2304 6 6 1.9992 -0.1595 -2.4476 7 16 2.6762 -1.3204 -3.5869 8 6 2.9360 -2.4314 -2.3136 9 6 3.5415 -3.8021 -2.4748 10 16 2.2268 -5.0098 -2.7965 11 8 1.4005 -5.0975 -1.6436 12 8 1.6347 -4.7106 -4.0532 13 6 3.1663 -6.5535 -2.9538 14 6 2.2042 -7.7100 -3.2325 15 8 2.9443 -8.9262 -3.3557 16 6 2.1355 -10.0748 -3.6177 17 6 3.0148 -11.2937 -3.7286 18 1 4.0843 -11.2005 -3.6104 19 6 2.4540 -12.5276 -3.9810 20 7 1.1515 -12.6411 -4.1244 21 14 3.5439 -14.0383 -4.1192 22 1 4.2829 -14.2338 -2.8460 23 1 2.7034 -15.2320 -4.3913 24 1 4.5120 -13.8504 -5.2295 25 7 2.5442 -1.9242 -1.1938 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 -1.7489 1.2493 33 1 3.1300 -0.7217 1.2491 34 1 1.6766 -0.2074 2.1393 35 1 1.6236 0.8237 -2.6899 36 1 4.2404 -3.7944 -3.3112 37 1 4.0704 -4.0753 -1.5617 38 1 3.8761 -6.4647 -3.7762 39 1 3.7065 -6.7461 -2.0268 40 1 1.4947 -7.7987 -2.4096 41 1 1.6636 -7.5177 -4.1592 42 1 1.4246 -10.2121 -2.8029 43 1 1.5934 -9.9319 -4.5525 44 1 0.7570 -13.5093 -4.3023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840934822.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:51 Heat of formation + Delta-G solvation = -83.588581 kcal Electronic energy + Delta-G solvation = -25388.710172 eV Core-core repulsion = 21560.476602 eV Total energy + Delta-G solvation = -3828.233571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.106 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.70148 -37.11817 -37.02900 -36.72302 -36.13523 -32.95824 -32.46201 -31.40901 -29.19831 -27.62680 -27.30010 -27.11522 -24.73930 -23.13737 -22.34338 -21.24293 -19.62204 -19.05168 -17.73590 -17.26814 -16.63068 -16.43060 -16.28342 -15.90634 -15.31584 -15.23793 -15.03677 -14.63244 -14.45620 -14.31592 -14.01009 -13.83486 -13.56204 -13.07857 -13.00647 -12.67291 -12.57083 -12.41629 -12.17908 -12.15842 -12.10451 -11.98201 -11.55017 -11.31311 -11.28134 -11.25413 -11.12778 -11.11241 -10.90803 -10.80842 -10.73851 -10.13262 -10.02545 -9.75475 -9.21421 -9.07637 -8.96534 -8.29149 -6.15581 -4.18601 -0.48205 0.37106 0.91133 1.30857 2.38254 2.49874 3.11565 3.29425 3.32424 3.35778 3.57182 3.79330 4.11615 4.29113 4.40906 4.44523 4.53399 4.61864 4.72502 4.82829 4.86361 4.99835 5.05145 5.20609 5.22414 5.29761 5.34579 5.42556 5.49252 5.51947 5.55365 5.62881 5.70626 5.81522 5.88634 5.92162 5.96231 6.13105 6.99470 7.32205 7.33365 7.71443 8.05537 8.41087 8.92063 9.46026 10.95734 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.027745 B = 0.001915 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.944790 B =14616.205473 C =14970.984658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.004 3.996 3 C -0.139 4.139 4 C -0.133 4.133 5 C 0.082 3.918 6 C -0.253 4.253 7 S 0.161 5.839 8 C 0.035 3.965 9 C -0.540 4.540 10 S 2.418 3.582 11 O -0.915 6.915 12 O -0.923 6.923 13 C -0.603 4.603 14 C 0.075 3.925 15 O -0.386 6.386 16 C 0.190 3.810 17 C -0.519 4.519 18 H 0.067 0.933 19 C 0.057 3.943 20 N -0.896 5.896 21 Si 0.911 3.089 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.274 1.274 25 N -0.441 5.441 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.182 0.818 36 H 0.154 0.846 37 H 0.164 0.836 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.011 0.989 43 H 0.011 0.989 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.366 30.695 5.578 31.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.001 3.999 3 C -0.197 4.197 4 C -0.190 4.190 5 C -0.051 4.051 6 C -0.392 4.392 7 S 0.416 5.584 8 C -0.242 4.242 9 C -0.669 4.669 10 S 2.596 3.404 11 O -0.912 6.912 12 O -0.920 6.920 13 C -0.733 4.733 14 C -0.004 4.004 15 O -0.306 6.306 16 C 0.116 3.884 17 C -0.557 4.557 18 H 0.085 0.915 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.738 3.262 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 N -0.156 5.156 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.199 0.801 36 H 0.172 0.828 37 H 0.182 0.818 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.029 0.971 43 H 0.029 0.971 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.793 30.346 4.857 30.858 hybrid contribution 0.904 -0.544 0.602 1.215 sum 3.697 29.801 5.459 30.522 Atomic orbital electron populations 1.21919 0.92937 1.02822 1.02157 1.19214 0.95788 0.94178 0.90716 1.21930 1.01350 0.94125 1.02268 1.21744 1.01213 1.01086 0.94969 1.20193 0.99677 0.89917 0.95342 1.26982 1.11049 1.05734 0.95455 1.84183 1.55016 1.06765 1.12391 1.25478 1.05840 1.00244 0.92672 1.29155 1.18948 1.04735 1.14068 1.08396 0.77745 0.78181 0.76054 1.93624 1.61731 1.85269 1.50545 1.93612 1.72534 1.83319 1.42568 1.30365 1.14112 1.16233 1.12598 1.21760 0.92048 0.85945 1.00655 1.87886 1.35088 1.14776 1.92863 1.20349 0.91330 0.81468 0.95250 1.20973 0.94417 0.90808 1.49548 0.91477 1.24968 0.95346 0.99136 0.95057 1.69956 1.09981 1.25129 1.48410 0.86347 0.79957 0.81067 0.78797 1.19980 1.21080 1.19983 1.66026 1.11546 1.11211 1.26823 0.92416 0.91900 0.91613 0.91595 0.92359 0.92385 0.91280 0.92539 0.92528 0.80119 0.82830 0.81842 0.84107 0.84039 0.92569 0.92562 0.97144 0.97150 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.43 37.16 0.31 -0.74 16 2 C 0.00 0.03 0.90 -155.66 -0.14 -0.11 16 3 C -0.14 -0.81 8.13 37.16 0.30 -0.51 16 4 C -0.13 -1.13 7.91 37.16 0.29 -0.84 16 5 C 0.08 0.83 5.41 -84.23 -0.46 0.38 16 6 C -0.25 -2.16 10.40 29.12 0.30 -1.86 16 7 S 0.16 1.49 23.18 -107.50 -2.49 -1.00 16 8 C 0.04 0.39 6.65 -13.45 -0.09 0.30 16 9 C -0.54 -4.62 6.39 36.01 0.23 -4.39 16 10 S 2.42 29.98 4.70 -107.50 -0.51 29.48 16 11 O -0.91 -14.61 18.10 -57.83 -1.05 -15.65 16 12 O -0.92 -13.72 18.10 -57.83 -1.05 -14.76 16 13 C -0.60 -7.59 6.18 37.16 0.23 -7.36 16 14 C 0.07 1.38 5.95 37.16 0.22 1.60 16 15 O -0.39 -9.15 10.33 -35.23 -0.36 -9.52 16 16 C 0.19 5.21 5.69 36.01 0.20 5.42 16 17 C -0.52 -15.17 9.43 -34.44 -0.32 -15.50 16 18 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 21 Si 0.91 21.63 29.54 -169.99 -5.02 16.61 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 N -0.44 -5.32 9.55 -8.06 -0.08 -5.39 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.28 7.15 -51.93 -0.37 -0.09 16 32 H 0.07 0.71 7.97 -51.93 -0.41 0.30 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.18 1.01 7.31 -52.49 -0.38 0.63 16 36 H 0.15 0.74 8.14 -51.92 -0.42 0.32 16 37 H 0.16 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.14 1.42 8.14 -51.92 -0.42 0.99 16 39 H 0.14 1.48 8.14 -51.92 -0.42 1.06 16 40 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 395.71 15.07 5.96 5.96 Total: -1.00 -37.33 395.71 -9.92 -47.25 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -7.06 Total: -4.93 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: 0.99 Total: -22.07 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 0.66 Total: -31.37 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -2.46 Total: -39.93 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 31.48 SS G_CDS: -3.00 Total: 28.48 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.33 -9.92 -47.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840934822.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.340 kcal (2) G-P(sol) polarization free energy of solvation -37.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds