Wall clock time and date at job start Wed Apr 1 2020 04:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99469 * 2 1 4 4 H 1.48497 * 109.47024 * 264.74301 * 3 2 1 5 5 H 1.48503 * 109.47388 * 24.73932 * 3 2 1 6 6 H 1.48502 * 109.47015 * 144.74184 * 3 2 1 7 7 C 1.37875 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99927 * 5.34562 * 7 2 1 9 9 C 1.50702 * 119.99852 * 185.34425 * 7 2 1 10 10 O 1.42895 * 110.64012 * 60.87800 * 9 7 2 11 11 C 1.55157 * 110.71876 * 297.74202 * 9 7 2 12 12 C 1.54911 * 101.57885 * 205.95912 * 11 9 7 13 13 N 1.47418 * 104.83336 * 37.01031 * 12 11 9 14 14 C 1.34773 * 125.64881 * 155.91272 * 13 12 11 15 15 O 1.21498 * 119.99988 * 179.97438 * 14 13 12 16 16 C 1.48198 * 120.00223 * 359.96797 * 14 13 12 17 17 C 1.35425 * 118.72000 * 179.73848 * 16 14 13 18 18 C 1.47105 * 118.79035 * 179.73480 * 17 16 14 19 19 O 1.21842 * 121.58953 * 180.25390 * 18 17 16 20 20 C 1.47446 * 116.81788 * 0.53693 * 18 17 16 21 21 C 1.39532 * 121.31006 * 179.71731 * 20 18 17 22 22 C 1.36632 * 119.69930 * 180.02562 * 21 20 18 23 23 C 1.39085 * 120.37371 * 0.02562 * 22 21 20 24 24 F 1.35102 * 119.65559 * 180.02562 * 23 22 21 25 25 C 1.38091 * 120.68688 * 359.97438 * 23 22 21 26 26 C 1.39012 * 119.83105 * 0.02562 * 25 23 22 27 27 O 1.34111 * 118.71752 * 0.02562 * 16 14 13 28 28 C 1.47025 * 108.70289 * 335.86913 * 13 12 11 29 29 H 0.96990 * 120.00336 * 0.02562 * 1 2 3 30 30 H 0.96697 * 114.00213 * 56.86194 * 10 9 7 31 31 H 1.09006 * 111.00466 * 324.02681 * 11 9 7 32 32 H 1.08993 * 111.00733 * 87.84376 * 11 9 7 33 33 H 1.09002 * 110.36491 * 155.84864 * 12 11 9 34 34 H 1.09002 * 110.36336 * 278.16281 * 12 11 9 35 35 H 1.07996 * 120.60093 * 359.97438 * 17 16 14 36 36 H 1.07998 * 120.15106 * 359.97438 * 21 20 18 37 37 H 1.08009 * 119.80958 * 179.97438 * 22 21 20 38 38 H 1.08005 * 120.08146 * 179.97438 * 25 23 22 39 39 H 1.09000 * 109.87977 * 241.64469 * 28 13 12 40 40 H 1.09000 * 109.87831 * 120.47969 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.6076 1.9824 -1.3942 5 1 1.3953 2.6823 0.5859 6 1 3.4867 1.4750 0.8082 7 6 2.0046 -1.1940 0.0005 8 1 1.4682 -2.1273 -0.0862 9 6 3.5068 -1.1967 0.1221 10 8 3.9133 -0.6014 1.3559 11 6 4.1562 -0.4636 -1.0813 12 6 5.5504 -1.1362 -1.1395 13 7 5.3034 -2.5476 -0.7930 14 6 6.0832 -3.5901 -1.1416 15 8 5.7813 -4.7159 -0.7987 16 6 7.3089 -3.3632 -1.9431 17 6 8.0763 -4.4288 -2.2743 18 6 9.2902 -4.2061 -3.0749 19 8 10.0149 -5.1281 -3.4054 20 6 9.5914 -2.8131 -3.4530 21 6 10.7218 -2.4946 -4.2064 22 6 10.9695 -1.1924 -4.5379 23 6 10.1023 -0.1852 -4.1281 24 9 10.3610 1.0974 -4.4645 25 6 8.9790 -0.4827 -3.3820 26 6 8.7091 -1.8013 -3.0343 27 8 7.6180 -2.1101 -2.3073 28 6 4.0659 -2.6295 -0.0033 29 1 -0.4850 0.8399 -0.0004 30 1 3.5349 -1.0229 2.1395 31 1 3.5959 -0.6459 -1.9985 32 1 4.2450 0.6050 -0.8862 33 1 5.9670 -1.0594 -2.1439 34 1 6.2226 -0.6792 -0.4133 35 1 7.8001 -5.4242 -1.9597 36 1 11.3983 -3.2736 -4.5255 37 1 11.8442 -0.9438 -5.1207 38 1 8.3124 0.3072 -3.0686 39 1 4.2838 -3.0304 0.9866 40 1 3.3427 -3.2665 -0.5126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844018794.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:53 Heat of formation + Delta-G solvation = -120.600532 kcal Electronic energy + Delta-G solvation = -30278.888268 eV Core-core repulsion = 25747.392611 eV Total energy + Delta-G solvation = -4531.495657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.105 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.54213 -42.26292 -40.00928 -39.01226 -38.28063 -37.81628 -34.84386 -33.02985 -32.54024 -31.48441 -31.15797 -30.47006 -28.67308 -26.53178 -24.79215 -24.64539 -23.27137 -22.53443 -20.78068 -20.14061 -19.81856 -18.71348 -18.00991 -17.62943 -17.01656 -16.95880 -16.88613 -16.12389 -16.05730 -15.82966 -15.31874 -15.14339 -14.89282 -14.65542 -14.53163 -14.43461 -14.24910 -13.65552 -13.56415 -13.46886 -13.12227 -12.88538 -12.70824 -12.53661 -12.35979 -12.02040 -11.61954 -11.50878 -11.22717 -10.76870 -10.47650 -10.42176 -10.20988 -10.16054 -9.99332 -9.50247 -9.16609 -8.94793 -8.87941 -8.65534 -8.47915 -6.33102 -4.46350 -0.13335 0.18167 0.79695 1.62346 2.16905 2.77243 2.82135 3.19384 3.26097 3.33221 3.48080 3.48716 3.64250 3.85600 4.11699 4.27178 4.29993 4.43014 4.59559 4.78363 4.94842 4.98654 5.01570 5.16824 5.21504 5.29404 5.45006 5.48174 5.49493 5.56656 5.70074 5.80417 5.87943 6.01980 6.22879 6.29362 6.43825 6.48383 6.71351 6.95217 7.12151 7.30481 7.45828 7.88869 8.06154 8.61494 8.76412 9.28560 10.77088 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.013582 B = 0.003367 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.058022 B = 8313.890142 C =10052.109600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.091 3.909 3 Si 0.873 3.127 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.228 1.228 7 C -0.556 4.556 8 H 0.080 0.920 9 C 0.218 3.782 10 O -0.573 6.573 11 C -0.128 4.128 12 C 0.096 3.904 13 N -0.587 5.587 14 C 0.577 3.423 15 O -0.512 6.512 16 C 0.112 3.888 17 C -0.238 4.238 18 C 0.426 3.574 19 O -0.453 6.453 20 C -0.240 4.240 21 C 0.002 3.998 22 C -0.186 4.186 23 C 0.170 3.830 24 F -0.123 7.123 25 C -0.181 4.181 26 C 0.185 3.815 27 O -0.209 6.209 28 C 0.093 3.907 29 H 0.269 0.731 30 H 0.369 0.631 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.177 0.823 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.161 0.839 39 H 0.067 0.933 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.984 0.161 -7.368 21.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.115 4.115 3 Si 0.701 3.299 4 H -0.208 1.208 5 H -0.226 1.226 6 H -0.151 1.151 7 C -0.593 4.593 8 H 0.098 0.902 9 C 0.177 3.823 10 O -0.380 6.380 11 C -0.166 4.166 12 C -0.026 4.026 13 N -0.317 5.317 14 C 0.362 3.638 15 O -0.390 6.390 16 C 0.062 3.938 17 C -0.260 4.260 18 C 0.309 3.691 19 O -0.332 6.332 20 C -0.242 4.242 21 C -0.016 4.016 22 C -0.204 4.204 23 C 0.150 3.850 24 F -0.101 7.101 25 C -0.201 4.201 26 C 0.139 3.861 27 O -0.114 6.114 28 C -0.028 4.028 29 H 0.078 0.922 30 H 0.216 0.784 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.194 0.806 36 H 0.171 0.829 37 H 0.167 0.833 38 H 0.178 0.822 39 H 0.086 0.914 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 20.248 -0.250 -7.699 21.664 hybrid contribution 0.012 0.775 0.166 0.793 sum 20.260 0.525 -7.533 21.622 Atomic orbital electron populations 1.69919 1.06687 1.27824 1.47388 1.24945 0.94586 0.99652 0.92362 0.87099 0.81810 0.82179 0.78815 1.20837 1.22589 1.15083 1.21160 0.88205 0.95407 1.54566 0.90174 1.19958 0.93923 0.85780 0.82603 1.86473 1.74459 1.60958 1.16085 1.23172 0.93300 0.99934 1.00189 1.22699 0.99182 0.80037 1.00657 1.48558 1.24801 1.07205 1.51143 1.17111 0.81342 0.84656 0.80731 1.90867 1.70811 1.21832 1.55447 1.22242 0.95166 0.81645 0.94744 1.24152 0.96956 1.00912 1.03962 1.19763 0.84322 0.87168 0.77889 1.90715 1.48645 1.45296 1.48550 1.20781 0.99801 0.95408 1.08224 1.20692 0.93688 0.96294 0.90927 1.20963 1.01943 0.92048 1.05493 1.17456 0.93652 0.79080 0.94833 1.91580 1.93470 1.35157 1.89899 1.20334 1.00097 0.94930 1.04695 1.18917 0.84432 0.92972 0.89794 1.83269 1.39476 1.27864 1.60830 1.23019 0.83453 1.01502 0.94820 0.92161 0.78381 0.89095 0.90225 0.89974 0.90715 0.80577 0.82930 0.83313 0.82157 0.91429 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.97 13.96 55.43 0.77 -24.20 16 2 C 0.09 2.37 5.47 -17.82 -0.10 2.27 16 3 Si 0.87 19.74 23.91 -169.99 -4.06 15.67 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.30 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.23 -4.96 5.45 56.52 0.31 -4.65 16 7 C -0.56 -13.83 8.79 -34.44 -0.30 -14.13 16 8 H 0.08 2.19 7.82 -52.49 -0.41 1.78 16 9 C 0.22 4.42 0.69 -89.94 -0.06 4.36 16 10 O -0.57 -11.33 10.48 -35.23 -0.37 -11.70 16 11 C -0.13 -2.35 4.81 -24.58 -0.12 -2.46 16 12 C 0.10 1.45 5.95 -2.53 -0.02 1.43 16 13 N -0.59 -9.71 3.33 -171.51 -0.57 -10.28 16 14 C 0.58 9.25 7.83 -12.17 -0.10 9.16 16 15 O -0.51 -9.42 16.50 5.37 0.09 -9.34 16 16 C 0.11 1.48 6.85 -36.49 -0.25 1.23 16 17 C -0.24 -3.03 9.76 -36.99 -0.36 -3.40 16 18 C 0.43 5.33 7.18 -32.24 -0.23 5.10 16 19 O -0.45 -6.54 17.42 5.06 0.09 -6.45 16 20 C -0.24 -2.53 5.89 -104.77 -0.62 -3.15 16 21 C 0.00 0.02 9.62 -39.68 -0.38 -0.36 16 22 C -0.19 -1.29 9.96 -39.85 -0.40 -1.69 16 23 C 0.17 1.37 7.29 -39.32 -0.29 1.08 16 24 F -0.12 -1.04 17.25 2.25 0.04 -1.00 16 25 C -0.18 -1.58 9.98 -39.35 -0.39 -1.97 16 26 C 0.18 1.91 6.78 -38.40 -0.26 1.65 16 27 O -0.21 -2.45 5.96 5.11 0.03 -2.42 16 28 C 0.09 1.73 6.22 -3.07 -0.02 1.71 16 29 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.37 6.37 9.07 45.56 0.41 6.79 16 31 H 0.09 1.69 8.04 -51.93 -0.42 1.27 16 32 H 0.08 1.48 4.94 -51.93 -0.26 1.22 16 33 H 0.08 1.05 5.92 -51.93 -0.31 0.74 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.18 2.24 7.49 -52.49 -0.39 1.84 16 36 H 0.15 1.06 7.80 -52.49 -0.41 0.65 16 37 H 0.15 0.66 8.06 -52.48 -0.42 0.24 16 38 H 0.16 1.18 8.06 -52.48 -0.42 0.75 16 39 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 40 H 0.08 1.62 7.67 -51.93 -0.40 1.23 16 LS Contribution 340.90 15.07 5.14 5.14 Total: -1.00 -30.11 340.90 -5.83 -35.94 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -3.10 Total: 7.80 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -3.89 Total: 0.83 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.20 Total: -34.48 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.16 Total: -29.90 kcal Atomic # 9 Polarization: -1.04 SS G_CDS: 0.04 Total: -1.00 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.06 Total: 15.67 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.11 -5.83 -35.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844018794.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.658 kcal (2) G-P(sol) polarization free energy of solvation -30.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds