Wall clock time and date at job start Wed Apr 1 2020 04:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99469 * 2 1 4 4 H 1.48497 * 109.47024 * 264.74301 * 3 2 1 5 5 H 1.48503 * 109.47388 * 24.73932 * 3 2 1 6 6 H 1.48502 * 109.47015 * 144.74184 * 3 2 1 7 7 C 1.37875 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99927 * 5.34562 * 7 2 1 9 9 C 1.50702 * 119.99852 * 185.34425 * 7 2 1 10 10 O 1.42895 * 110.64012 * 60.87800 * 9 7 2 11 11 C 1.55157 * 110.71876 * 297.74202 * 9 7 2 12 12 C 1.54911 * 101.57885 * 205.95912 * 11 9 7 13 13 N 1.47418 * 104.83336 * 37.01031 * 12 11 9 14 14 C 1.34773 * 125.64881 * 155.91272 * 13 12 11 15 15 O 1.21498 * 119.99988 * 179.97438 * 14 13 12 16 16 C 1.48198 * 120.00223 * 359.96797 * 14 13 12 17 17 C 1.35425 * 118.72000 * 179.73848 * 16 14 13 18 18 C 1.47105 * 118.79035 * 179.73480 * 17 16 14 19 19 O 1.21842 * 121.58953 * 180.25390 * 18 17 16 20 20 C 1.47446 * 116.81788 * 0.53693 * 18 17 16 21 21 C 1.39532 * 121.31006 * 179.71731 * 20 18 17 22 22 C 1.36632 * 119.69930 * 180.02562 * 21 20 18 23 23 C 1.39085 * 120.37371 * 0.02562 * 22 21 20 24 24 F 1.35102 * 119.65559 * 180.02562 * 23 22 21 25 25 C 1.38091 * 120.68688 * 359.97438 * 23 22 21 26 26 C 1.39012 * 119.83105 * 0.02562 * 25 23 22 27 27 O 1.34111 * 118.71752 * 0.02562 * 16 14 13 28 28 C 1.47025 * 108.70289 * 335.86913 * 13 12 11 29 29 H 0.96990 * 120.00336 * 0.02562 * 1 2 3 30 30 H 0.96697 * 114.00213 * 56.86194 * 10 9 7 31 31 H 1.09006 * 111.00466 * 324.02681 * 11 9 7 32 32 H 1.08993 * 111.00733 * 87.84376 * 11 9 7 33 33 H 1.09002 * 110.36491 * 155.84864 * 12 11 9 34 34 H 1.09002 * 110.36336 * 278.16281 * 12 11 9 35 35 H 1.07996 * 120.60093 * 359.97438 * 17 16 14 36 36 H 1.07998 * 120.15106 * 359.97438 * 21 20 18 37 37 H 1.08009 * 119.80958 * 179.97438 * 22 21 20 38 38 H 1.08005 * 120.08146 * 179.97438 * 25 23 22 39 39 H 1.09000 * 109.87977 * 241.64469 * 28 13 12 40 40 H 1.09000 * 109.87831 * 120.47969 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.6076 1.9824 -1.3942 5 1 1.3953 2.6823 0.5859 6 1 3.4867 1.4750 0.8082 7 6 2.0046 -1.1940 0.0005 8 1 1.4682 -2.1273 -0.0862 9 6 3.5068 -1.1967 0.1221 10 8 3.9133 -0.6014 1.3559 11 6 4.1562 -0.4636 -1.0813 12 6 5.5504 -1.1362 -1.1395 13 7 5.3034 -2.5476 -0.7930 14 6 6.0832 -3.5901 -1.1416 15 8 5.7813 -4.7159 -0.7987 16 6 7.3089 -3.3632 -1.9431 17 6 8.0763 -4.4288 -2.2743 18 6 9.2902 -4.2061 -3.0749 19 8 10.0149 -5.1281 -3.4054 20 6 9.5914 -2.8131 -3.4530 21 6 10.7218 -2.4946 -4.2064 22 6 10.9695 -1.1924 -4.5379 23 6 10.1023 -0.1852 -4.1281 24 9 10.3610 1.0974 -4.4645 25 6 8.9790 -0.4827 -3.3820 26 6 8.7091 -1.8013 -3.0343 27 8 7.6180 -2.1101 -2.3073 28 6 4.0659 -2.6295 -0.0033 29 1 -0.4850 0.8399 -0.0004 30 1 3.5349 -1.0229 2.1395 31 1 3.5959 -0.6459 -1.9985 32 1 4.2450 0.6050 -0.8862 33 1 5.9670 -1.0594 -2.1439 34 1 6.2226 -0.6792 -0.4133 35 1 7.8001 -5.4242 -1.9597 36 1 11.3983 -3.2736 -4.5255 37 1 11.8442 -0.9438 -5.1207 38 1 8.3124 0.3072 -3.0686 39 1 4.2838 -3.0304 0.9866 40 1 3.3427 -3.2665 -0.5126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844018794.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:52 Heat of formation + Delta-G solvation = -141.717832 kcal Electronic energy + Delta-G solvation = -30279.803983 eV Core-core repulsion = 25747.392611 eV Total energy + Delta-G solvation = -4532.411372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.105 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.17008 -43.16896 -41.27899 -39.98915 -39.45980 -38.88282 -36.34655 -34.49629 -34.00303 -32.43564 -31.96219 -31.72110 -30.13362 -27.96587 -26.11744 -25.44270 -24.38112 -23.57053 -22.06378 -21.39922 -20.86622 -19.71960 -19.40845 -18.91048 -17.98111 -17.87459 -17.73462 -17.17951 -16.99072 -16.81072 -16.70878 -16.58884 -16.39794 -15.69819 -15.43829 -15.30324 -15.10290 -15.02929 -14.92415 -14.82038 -14.24808 -14.15505 -14.09974 -13.73539 -13.28628 -13.21200 -13.14308 -12.87821 -12.47963 -12.37682 -12.16988 -11.90901 -11.54029 -11.16516 -11.04880 -10.97911 -10.77909 -10.37032 -10.19710 -9.90740 -9.67277 -8.35629 -6.52078 -1.02555 -0.62094 0.06446 0.67315 1.23281 1.40277 1.49945 1.59533 1.69600 1.71675 2.40756 2.43592 2.57835 2.87553 3.00256 3.10303 3.15951 3.51369 3.57781 3.70099 3.74208 3.86040 3.93670 3.98391 4.21106 4.26259 4.37260 4.47793 4.53839 4.64216 4.72100 4.75980 4.87050 4.89951 4.95871 5.01890 5.04271 5.36061 5.41135 5.48850 5.81356 6.05516 6.16365 6.19339 6.58301 6.60930 7.12525 7.29262 8.78401 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.013582 B = 0.003367 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.058022 B = 8313.890142 C =10052.109600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.038 3.962 3 Si 0.935 3.065 4 H -0.265 1.265 5 H -0.311 1.311 6 H -0.209 1.209 7 C -0.554 4.554 8 H 0.038 0.962 9 C 0.218 3.782 10 O -0.571 6.571 11 C -0.131 4.131 12 C 0.105 3.895 13 N -0.590 5.590 14 C 0.579 3.421 15 O -0.542 6.542 16 C 0.120 3.880 17 C -0.236 4.236 18 C 0.427 3.573 19 O -0.479 6.479 20 C -0.251 4.251 21 C 0.002 3.998 22 C -0.168 4.168 23 C 0.172 3.828 24 F -0.122 7.122 25 C -0.178 4.178 26 C 0.173 3.827 27 O -0.208 6.208 28 C 0.100 3.900 29 H 0.268 0.732 30 H 0.379 0.621 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.171 0.829 36 H 0.165 0.835 37 H 0.179 0.821 38 H 0.176 0.824 39 H 0.073 0.927 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.491 2.202 -8.478 25.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.163 4.163 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.239 1.239 6 H -0.131 1.131 7 C -0.592 4.592 8 H 0.056 0.944 9 C 0.178 3.822 10 O -0.379 6.379 11 C -0.169 4.169 12 C -0.016 4.016 13 N -0.320 5.320 14 C 0.365 3.635 15 O -0.421 6.421 16 C 0.070 3.930 17 C -0.258 4.258 18 C 0.312 3.688 19 O -0.360 6.360 20 C -0.253 4.253 21 C -0.016 4.016 22 C -0.186 4.186 23 C 0.152 3.848 24 F -0.100 7.100 25 C -0.197 4.197 26 C 0.128 3.872 27 O -0.114 6.114 28 C -0.022 4.022 29 H 0.077 0.923 30 H 0.228 0.772 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.128 0.872 34 H 0.110 0.890 35 H 0.188 0.812 36 H 0.183 0.817 37 H 0.197 0.803 38 H 0.194 0.806 39 H 0.091 0.909 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 23.784 1.797 -8.816 25.429 hybrid contribution -1.060 0.095 0.486 1.170 sum 22.724 1.892 -8.330 24.276 Atomic orbital electron populations 1.70065 1.08675 1.28619 1.50048 1.25783 0.95099 1.03334 0.92088 0.86151 0.80760 0.77302 0.79783 1.19087 1.23946 1.13115 1.21405 0.90952 0.93644 1.53194 0.94356 1.19781 0.91234 0.87488 0.83730 1.86420 1.74184 1.61099 1.16197 1.23120 0.95028 1.00228 0.98544 1.22755 0.97407 0.78508 1.02890 1.48532 1.24173 1.08192 1.51080 1.17361 0.81791 0.83968 0.80345 1.90850 1.71827 1.22939 1.56526 1.21547 0.94100 0.82460 0.94927 1.24184 0.97190 1.00660 1.03785 1.19900 0.83646 0.88013 0.77223 1.90703 1.49337 1.46266 1.49731 1.20734 1.01060 0.94083 1.09431 1.20870 0.93028 0.97305 0.90354 1.21254 1.02191 0.90979 1.04174 1.17551 0.93526 0.79254 0.94420 1.91594 1.93410 1.35230 1.89810 1.20489 1.00498 0.94415 1.04251 1.19019 0.84141 0.93586 0.90454 1.83154 1.40376 1.26635 1.61241 1.22697 0.84170 1.00041 0.95279 0.92274 0.77220 0.89799 0.89700 0.87213 0.89005 0.81168 0.81729 0.80312 0.80621 0.90918 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.74 13.96 21.45 0.30 -54.44 16 2 C 0.04 2.00 5.47 84.65 0.46 2.46 16 3 Si 0.94 40.18 23.91 68.60 1.64 41.82 16 4 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 5 H -0.31 -13.96 7.11 99.48 0.71 -13.26 16 6 H -0.21 -8.29 5.45 99.48 0.54 -7.74 16 7 C -0.55 -28.28 8.79 25.60 0.22 -28.05 16 8 H 0.04 2.22 7.82 -2.91 -0.02 2.19 16 9 C 0.22 8.72 0.69 -10.35 -0.01 8.71 16 10 O -0.57 -21.46 10.48 -148.98 -1.56 -23.02 16 11 C -0.13 -4.52 4.81 31.99 0.15 -4.37 16 12 C 0.11 2.86 5.95 86.86 0.52 3.37 16 13 N -0.59 -18.76 3.33 -814.83 -2.71 -21.47 16 14 C 0.58 18.13 7.83 86.89 0.68 18.81 16 15 O -0.54 -20.10 16.50 -3.71 -0.06 -20.16 16 16 C 0.12 3.00 6.85 24.27 0.17 3.17 16 17 C -0.24 -5.87 9.76 23.95 0.23 -5.64 16 18 C 0.43 10.22 7.18 27.03 0.19 10.41 16 19 O -0.48 -13.49 17.42 -4.80 -0.08 -13.57 16 20 C -0.25 -4.71 5.89 -19.96 -0.12 -4.82 16 21 C 0.00 0.03 9.62 22.21 0.21 0.25 16 22 C -0.17 -1.62 9.96 22.10 0.22 -1.40 16 23 C 0.17 2.07 7.29 22.44 0.16 2.24 16 24 F -0.12 -1.58 17.25 44.97 0.78 -0.80 16 25 C -0.18 -2.41 9.98 22.42 0.22 -2.18 16 26 C 0.17 3.08 6.78 23.04 0.16 3.24 16 27 O -0.21 -4.34 5.96 -4.63 -0.03 -4.37 16 28 C 0.10 3.72 6.22 86.73 0.54 4.26 16 29 H 0.27 14.81 8.31 -92.72 -0.77 14.04 16 30 H 0.38 12.60 9.07 -74.06 -0.67 11.93 16 31 H 0.08 2.99 8.04 -2.38 -0.02 2.97 16 32 H 0.08 2.85 4.94 -2.39 -0.01 2.84 16 33 H 0.11 2.40 5.92 -2.39 -0.01 2.39 16 34 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.17 4.38 7.49 -2.91 -0.02 4.35 16 36 H 0.17 1.79 7.80 -2.91 -0.02 1.77 16 37 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 38 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.07 2.59 8.07 -2.39 -0.02 2.57 16 40 H 0.06 2.51 7.67 -2.39 -0.02 2.49 16 Total: -1.00 -66.88 340.90 2.59 -64.29 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.30 Total: 21.28 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 4.02 Total: 10.45 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -2.41 Total: -75.92 kcal Atomic # 8 Polarization: -59.39 SS G_CDS: -1.73 Total: -61.12 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.78 Total: -0.80 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 1.64 Total: 41.82 kcal Total: -66.88 2.59 -64.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844018794.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.431 kcal (2) G-P(sol) polarization free energy of solvation -66.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds