Wall clock time and date at job start Wed Apr 1 2020 04:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99907 * 2 1 4 4 H 1.48500 * 109.46959 * 270.00076 * 3 2 1 5 5 H 1.48501 * 109.46942 * 30.00012 * 3 2 1 6 6 H 1.48494 * 109.46997 * 150.00076 * 3 2 1 7 7 C 1.37879 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99797 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99755 * 0.02562 * 7 2 1 10 10 O 1.42907 * 110.88623 * 62.42613 * 9 7 2 11 11 C 1.55155 * 111.03665 * 186.32756 * 9 7 2 12 12 C 1.54330 * 102.94292 * 153.58963 * 11 9 7 13 13 N 1.47026 * 107.26840 * 337.81024 * 12 11 9 14 14 C 1.34780 * 125.64391 * 178.97562 * 13 12 11 15 15 O 1.21497 * 119.99847 * 179.97438 * 14 13 12 16 16 C 1.48192 * 120.00092 * 359.97116 * 14 13 12 17 17 C 1.35422 * 118.71830 * 180.02562 * 16 14 13 18 18 C 1.47104 * 118.79271 * 180.02562 * 17 16 14 19 19 O 1.21856 * 121.58913 * 180.02562 * 18 17 16 20 20 C 1.47441 * 116.81957 * 359.97438 * 18 17 16 21 21 C 1.39532 * 121.31028 * 180.02562 * 20 18 17 22 22 C 1.36634 * 119.70374 * 180.02562 * 21 20 18 23 23 C 1.39094 * 120.36858 * 359.96204 * 22 21 20 24 24 F 1.35094 * 119.65275 * 180.02562 * 23 22 21 25 25 C 1.38093 * 120.68840 * 0.02562 * 23 22 21 26 26 C 1.39016 * 119.83007 * 0.02562 * 25 23 22 27 27 O 1.34119 * 118.72183 * 359.73852 * 16 14 13 28 28 C 1.47420 * 108.70428 * 358.94103 * 13 12 11 29 29 H 0.97002 * 119.99812 * 359.97438 * 1 2 3 30 30 H 0.96693 * 113.99773 * 297.57255 * 10 9 7 31 31 H 1.08998 * 110.71769 * 35.23084 * 11 9 7 32 32 H 1.08991 * 110.72382 * 271.95481 * 11 9 7 33 33 H 1.08998 * 109.88224 * 218.39343 * 12 11 9 34 34 H 1.08998 * 109.88221 * 97.22736 * 12 11 9 35 35 H 1.07992 * 120.60230 * 0.02562 * 17 16 14 36 36 H 1.08005 * 120.14969 * 359.97438 * 21 20 18 37 37 H 1.07999 * 119.81514 * 179.97438 * 22 21 20 38 38 H 1.08002 * 120.08714 * 180.02562 * 25 23 22 39 39 H 1.08997 * 110.36858 * 142.96748 * 28 13 12 40 40 H 1.08999 * 110.36307 * 265.28963 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4616 -2.6315 -1.1833 11 6 2.2190 -3.7011 0.1608 12 6 1.3257 -4.7804 0.8079 13 7 0.2054 -4.0864 1.4597 14 6 -0.8079 -4.6797 2.1214 15 8 -1.6837 -4.0037 2.6236 16 6 -0.8540 -6.1564 2.2361 17 6 -1.8842 -6.7252 2.9062 18 6 -1.9312 -8.1910 3.0216 19 8 -2.8347 -8.7561 3.6125 20 6 -0.8336 -8.9437 2.3871 21 6 -0.7855 -10.3373 2.4388 22 6 0.2473 -11.0017 1.8399 23 6 1.2483 -10.2967 1.1797 24 9 2.2625 -10.9684 0.5920 25 6 1.2161 -8.9175 1.1187 26 6 0.1744 -8.2228 1.7226 27 8 0.1232 -6.8778 1.6674 28 6 0.3745 -2.6342 1.2705 29 1 -0.4850 0.8401 0.0004 30 1 -0.2243 -1.9563 -1.2761 31 1 3.0492 -3.4427 0.8182 32 1 2.5843 -4.0343 -0.8105 33 1 1.8972 -5.3392 1.5489 34 1 0.9473 -5.4567 0.0414 35 1 -2.6572 -6.1139 3.3477 36 1 -1.5607 -10.8883 2.9507 37 1 0.2866 -12.0803 1.8791 38 1 1.9981 -8.3800 0.6031 39 1 -0.5930 -2.1565 1.1163 40 1 0.8820 -2.1963 2.1301 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844018795.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:55 Heat of formation + Delta-G solvation = -153.488030 kcal Electronic energy + Delta-G solvation = -30219.519389 eV Core-core repulsion = 25686.597623 eV Total energy + Delta-G solvation = -4532.921766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.105 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.15877 -43.13370 -41.15234 -39.96666 -39.26265 -38.83712 -36.18068 -34.23108 -33.98286 -32.38497 -31.93656 -31.65460 -29.69169 -27.81054 -26.14216 -25.42525 -24.41935 -23.55506 -21.66569 -21.47542 -20.83605 -19.55546 -19.12818 -18.83961 -17.96516 -17.79981 -17.68411 -17.18561 -16.91526 -16.81897 -16.73629 -16.44319 -16.27653 -15.66483 -15.42825 -15.27270 -15.01621 -15.00577 -14.82727 -14.67434 -14.22095 -13.88466 -13.67488 -13.51813 -13.33267 -13.20029 -12.85104 -12.60009 -12.45001 -12.35625 -12.23179 -12.09425 -11.63647 -11.21438 -11.15958 -11.03758 -10.66525 -10.34297 -10.18188 -9.77516 -9.59308 -8.25141 -6.41564 -1.01129 -0.61346 0.08023 0.70267 1.25609 1.43166 1.46593 1.55076 1.70419 1.76104 2.38994 2.44454 2.60955 2.91377 3.01622 3.11266 3.20949 3.58593 3.72421 3.76434 3.86605 3.97282 4.05872 4.13945 4.26907 4.33978 4.49441 4.58126 4.67858 4.70612 4.74824 4.88015 4.97409 5.02764 5.07043 5.14900 5.34925 5.41087 5.45796 5.75509 5.84396 6.06037 6.17736 6.31517 6.64885 6.70574 7.27108 7.35538 8.80020 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.017463 B = 0.002905 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.043063 B = 9634.856353 C =10946.667797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.028 3.972 3 Si 0.961 3.039 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.554 4.554 8 H 0.071 0.929 9 C 0.232 3.768 10 O -0.587 6.587 11 C -0.111 4.111 12 C 0.106 3.894 13 N -0.590 5.590 14 C 0.570 3.430 15 O -0.551 6.551 16 C 0.124 3.876 17 C -0.243 4.243 18 C 0.428 3.572 19 O -0.480 6.480 20 C -0.252 4.252 21 C 0.003 3.997 22 C -0.167 4.167 23 C 0.174 3.826 24 F -0.121 7.121 25 C -0.176 4.176 26 C 0.173 3.827 27 O -0.208 6.208 28 C 0.105 3.895 29 H 0.269 0.731 30 H 0.374 0.626 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.167 0.833 36 H 0.165 0.835 37 H 0.181 0.819 38 H 0.178 0.822 39 H 0.056 0.944 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.624 -21.190 2.457 21.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.173 4.173 3 Si 0.787 3.213 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.592 4.592 8 H 0.089 0.911 9 C 0.192 3.808 10 O -0.394 6.394 11 C -0.149 4.149 12 C -0.015 4.015 13 N -0.320 5.320 14 C 0.356 3.644 15 O -0.432 6.432 16 C 0.074 3.926 17 C -0.265 4.265 18 C 0.313 3.687 19 O -0.362 6.362 20 C -0.254 4.254 21 C -0.015 4.015 22 C -0.185 4.185 23 C 0.154 3.846 24 F -0.099 7.099 25 C -0.194 4.194 26 C 0.128 3.872 27 O -0.113 6.113 28 C -0.017 4.017 29 H 0.079 0.921 30 H 0.222 0.778 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.184 0.816 36 H 0.183 0.817 37 H 0.198 0.802 38 H 0.195 0.805 39 H 0.074 0.926 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.149 -21.462 2.807 22.039 hybrid contribution -0.409 1.943 0.118 1.989 sum 3.740 -19.519 2.925 20.088 Atomic orbital electron populations 1.69817 1.07087 1.28430 1.50032 1.25784 0.95707 1.02695 0.93097 0.85499 0.78802 0.78844 0.78157 1.20267 1.21371 1.18865 1.21782 0.94051 0.91008 1.52369 0.91089 1.19877 0.87141 0.93316 0.80490 1.86112 1.51491 1.56782 1.45031 1.22674 0.97184 0.93394 1.01657 1.22353 0.86702 0.95091 0.97343 1.48806 1.23195 1.09859 1.50135 1.17486 0.81998 0.84894 0.80037 1.90835 1.39190 1.63093 1.50045 1.21567 0.87937 0.89648 0.93437 1.24168 1.00599 0.97133 1.04595 1.19885 0.84103 0.87597 0.77102 1.90696 1.35302 1.73060 1.37117 1.20728 0.98984 0.96914 1.08760 1.20867 0.97074 0.90519 0.93082 1.21256 0.93662 1.03269 1.00334 1.17521 0.85622 0.88705 0.92747 1.91591 1.57356 1.79805 1.81153 1.20475 1.00416 0.92657 1.05900 1.19052 0.94301 0.79170 0.94691 1.83075 1.44487 1.18314 1.65435 1.23072 1.01223 0.77175 1.00261 0.92147 0.77754 0.88820 0.89205 0.88467 0.89997 0.81591 0.81729 0.80173 0.80503 0.92564 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.76 10.69 21.45 0.23 -47.53 16 2 C 0.03 1.42 5.29 84.65 0.45 1.86 16 3 Si 0.96 40.14 29.54 68.60 2.03 42.17 16 4 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 7 C -0.55 -27.12 8.27 25.60 0.21 -26.90 16 8 H 0.07 3.35 7.79 -2.91 -0.02 3.33 16 9 C 0.23 10.42 0.87 -10.15 -0.01 10.41 16 10 O -0.59 -28.26 13.16 -148.98 -1.96 -30.22 16 11 C -0.11 -3.80 6.13 31.78 0.19 -3.60 16 12 C 0.11 3.18 5.41 86.73 0.47 3.64 16 13 N -0.59 -22.29 3.33 -814.82 -2.71 -25.00 16 14 C 0.57 21.34 7.83 86.89 0.68 22.02 16 15 O -0.55 -24.46 16.43 -3.71 -0.06 -24.52 16 16 C 0.12 3.66 6.85 24.27 0.17 3.83 16 17 C -0.24 -7.01 9.76 23.95 0.23 -6.78 16 18 C 0.43 11.43 7.18 27.03 0.19 11.63 16 19 O -0.48 -14.70 17.42 -4.85 -0.08 -14.79 16 20 C -0.25 -5.25 5.89 -19.96 -0.12 -5.36 16 21 C 0.00 0.04 9.62 22.21 0.21 0.25 16 22 C -0.17 -1.75 9.96 22.10 0.22 -1.53 16 23 C 0.17 2.21 7.29 22.44 0.16 2.38 16 24 F -0.12 -1.59 17.25 44.97 0.78 -0.81 16 25 C -0.18 -2.58 9.98 22.42 0.22 -2.36 16 26 C 0.17 3.45 6.78 23.04 0.16 3.60 16 27 O -0.21 -4.99 6.23 -4.69 -0.03 -5.02 16 28 C 0.10 4.75 5.38 86.86 0.47 5.22 16 29 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 30 H 0.37 19.03 7.56 -74.06 -0.56 18.47 16 31 H 0.09 2.93 8.03 -2.39 -0.02 2.91 16 32 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 33 H 0.10 2.29 7.57 -2.39 -0.02 2.27 16 34 H 0.08 2.27 7.43 -2.39 -0.02 2.25 16 35 H 0.17 5.04 7.49 -2.91 -0.02 5.02 16 36 H 0.17 2.01 7.80 -2.91 -0.02 1.99 16 37 H 0.18 0.78 8.06 -2.91 -0.02 0.75 16 38 H 0.18 1.97 8.06 -2.91 -0.02 1.95 16 39 H 0.06 2.95 7.33 -2.39 -0.02 2.93 16 40 H 0.06 2.67 8.03 -2.39 -0.02 2.65 16 Total: -1.00 -61.94 349.44 2.67 -59.27 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 0.56 Total: 28.13 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: 3.92 Total: 18.30 kcal Atomic # 7 Polarization: -70.04 SS G_CDS: -2.48 Total: -72.53 kcal Atomic # 8 Polarization: -72.40 SS G_CDS: -2.14 Total: -74.54 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.78 Total: -0.81 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -61.94 2.67 -59.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844018795.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.217 kcal (2) G-P(sol) polarization free energy of solvation -61.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds