Wall clock time and date at job start Wed Apr 1 2020 04:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 116.99841 * 2 1 4 4 C 1.38752 * 120.05948 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94340 * 179.97438 * 4 3 2 6 6 C 1.38284 * 120.05765 * 0.02562 * 5 4 3 7 7 C 1.38250 * 120.11243 * 359.73912 * 6 5 4 8 8 C 1.38167 * 120.05029 * 0.51412 * 7 6 5 9 9 C 1.50704 * 120.02415 * 179.76675 * 8 7 6 10 10 H 1.08995 * 109.47006 * 214.71953 * 9 8 7 11 11 O 1.42897 * 109.47092 * 334.72060 * 9 8 7 12 12 C 1.53001 * 109.46973 * 94.72162 * 9 8 7 13 13 N 1.46497 * 109.47069 * 179.97438 * 12 9 8 14 14 C 1.34775 * 120.00254 * 180.02562 * 13 12 9 15 15 O 1.21762 * 120.00072 * 359.97438 * 14 13 12 16 16 C 1.46236 * 120.00297 * 179.97438 * 14 13 12 17 17 S 1.75669 * 125.22807 * 0.02847 * 16 14 13 18 18 C 1.75476 * 92.09365 * 179.97438 * 17 16 14 19 19 C 1.32766 * 111.35962 * 359.97438 * 18 17 16 20 20 C 1.39549 * 125.22788 * 179.97438 * 16 14 13 21 21 C 1.40532 * 123.71863 * 0.07021 * 20 16 14 22 22 H 1.08002 * 119.99421 * 23.50863 * 21 20 16 23 23 C 1.40300 * 120.00416 * 203.50148 * 21 20 16 24 24 N 1.30642 * 120.00326 * 9.82145 * 23 21 20 25 25 Si 1.86809 * 120.00103 * 189.82619 * 23 21 20 26 26 H 1.48501 * 109.46950 * 89.99795 * 25 23 21 27 27 H 1.48502 * 109.47031 * 210.00009 * 25 23 21 28 28 H 1.48499 * 109.46861 * 330.00101 * 25 23 21 29 29 H 1.08994 * 109.47328 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47051 * 299.99966 * 1 2 3 31 31 H 1.09006 * 109.47595 * 59.99482 * 1 2 3 32 32 H 1.07995 * 120.03071 * 359.96628 * 4 3 2 33 33 H 1.08000 * 119.97188 * 179.97438 * 5 4 3 34 34 H 1.08006 * 119.94683 * 179.97438 * 6 5 4 35 35 H 1.07994 * 119.97395 * 180.25539 * 7 6 5 36 36 H 0.96704 * 113.99845 * 60.00400 * 11 9 8 37 37 H 1.09000 * 109.47261 * 59.99760 * 12 9 8 38 38 H 1.09000 * 109.47331 * 300.00138 * 12 9 8 39 39 H 0.97000 * 120.00052 * 359.97438 * 13 12 9 40 40 H 1.07989 * 124.31773 * 179.72968 * 18 17 16 41 41 H 1.08001 * 122.78289 * 179.97438 * 19 18 17 42 42 H 0.96993 * 120.00481 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3019 3.6757 0.0005 7 6 4.0560 2.5170 0.0049 8 6 3.4311 1.2848 -0.0009 9 6 4.2537 0.0220 -0.0014 10 1 3.7465 -0.7418 -0.5908 11 8 5.5366 0.2895 -0.5713 12 6 4.4273 -0.4741 1.4354 13 7 5.2264 -1.7019 1.4349 14 6 5.5089 -2.3227 2.5973 15 8 5.1004 -1.8628 3.6481 16 6 6.3062 -3.5486 2.5967 17 16 6.9636 -4.3291 1.1669 18 6 7.6952 -5.6066 2.1218 19 6 7.4531 -5.4415 3.4167 20 6 6.6625 -4.2776 3.7321 21 6 6.2912 -3.9175 5.0387 22 1 5.4226 -3.2967 5.2015 23 6 7.0488 -4.3645 6.1317 24 7 8.1997 -4.9499 5.9332 25 14 6.4116 -4.1229 7.8711 26 1 5.6002 -5.3012 8.2692 27 1 7.5588 -3.9743 8.8023 28 1 5.5693 -2.9010 7.9244 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.2129 2.3204 0.0004 33 1 1.3341 4.5114 0.0011 34 1 3.7924 4.6380 0.0005 35 1 5.1344 2.5751 0.0087 36 1 6.0453 0.9613 -0.0968 37 1 3.4487 -0.6782 1.8701 38 1 4.9345 0.2897 2.0249 39 1 5.5516 -2.0686 0.5978 40 1 8.2659 -6.4250 1.7086 41 1 7.8173 -6.1230 4.1713 42 1 8.7236 -5.2586 6.6888 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866639918.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:24 Heat of formation + Delta-G solvation = -100.665219 kcal Electronic energy + Delta-G solvation = -27208.850322 eV Core-core repulsion = 23244.432302 eV Total energy + Delta-G solvation = -3964.418021 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.45799 -40.20510 -38.94977 -37.98103 -37.58115 -35.03089 -34.91113 -32.77854 -31.16763 -30.92595 -29.54953 -28.18569 -27.60937 -24.93533 -23.68771 -23.07138 -22.27815 -21.74899 -20.62931 -19.45135 -19.33559 -17.95093 -17.65870 -17.54136 -17.17636 -16.71692 -16.39862 -16.30785 -16.12585 -15.66110 -15.40396 -15.26421 -15.22950 -14.74242 -14.39162 -14.21724 -13.96004 -13.74500 -13.65646 -13.40924 -13.10555 -13.00263 -12.93001 -12.75806 -12.72008 -12.25557 -12.08914 -12.04149 -12.03225 -11.97045 -11.42499 -11.25508 -11.04897 -10.40873 -9.97965 -9.88175 -9.35321 -9.16358 -8.94255 -8.85952 -6.46073 0.27027 0.30665 0.44653 1.33069 1.34597 1.37583 1.47647 1.78988 1.97556 2.17587 2.34525 2.45923 2.53454 2.77638 3.29969 3.34389 3.64006 3.83203 3.87516 4.04942 4.09724 4.26724 4.36396 4.36908 4.42576 4.44140 4.56634 4.64246 4.71118 4.82312 4.92404 4.99026 5.01549 5.27810 5.33033 5.39221 5.43731 5.53986 5.56973 5.68488 5.81924 5.83785 6.39447 6.39671 6.56867 6.62311 6.71882 6.96090 7.71704 8.07645 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.013215 B = 0.002764 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.251372 B =10126.857453 C =11012.129471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.120 3.880 4 C -0.213 4.213 5 C -0.079 4.079 6 C -0.159 4.159 7 C -0.080 4.080 8 C -0.169 4.169 9 C 0.166 3.834 10 H 0.106 0.894 11 O -0.557 6.557 12 C 0.112 3.888 13 N -0.729 5.729 14 C 0.590 3.410 15 O -0.605 6.605 16 C -0.467 4.467 17 S 0.007 5.993 18 C -0.191 4.191 19 C -0.129 4.129 20 C 0.113 3.887 21 C -0.418 4.418 22 H 0.083 0.917 23 C 0.036 3.964 24 N -0.793 5.793 25 Si 0.990 3.010 26 H -0.250 1.250 27 H -0.253 1.253 28 H -0.273 1.273 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.150 0.850 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.387 0.613 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.401 0.599 40 H 0.178 0.822 41 H 0.143 0.857 42 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.856 11.938 -10.512 18.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.074 3.926 4 C -0.232 4.232 5 C -0.097 4.097 6 C -0.177 4.177 7 C -0.097 4.097 8 C -0.170 4.170 9 C 0.107 3.893 10 H 0.124 0.876 11 O -0.364 6.364 12 C -0.012 4.012 13 N -0.382 5.382 14 C 0.387 3.613 15 O -0.492 6.492 16 C -0.586 4.586 17 S 0.263 5.737 18 C -0.325 4.325 19 C -0.162 4.162 20 C 0.102 3.898 21 C -0.448 4.448 22 H 0.101 0.899 23 C -0.184 4.184 24 N -0.417 5.417 25 Si 0.809 3.191 26 H -0.173 1.173 27 H -0.177 1.177 28 H -0.197 1.197 29 H 0.128 0.872 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.167 0.833 33 H 0.172 0.828 34 H 0.168 0.832 35 H 0.163 0.837 36 H 0.237 0.763 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.236 0.764 40 H 0.195 0.805 41 H 0.160 0.840 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.093 11.829 -11.652 19.431 hybrid contribution -0.023 -0.064 2.285 2.286 sum -10.116 11.765 -9.367 18.125 Atomic orbital electron populations 1.23328 0.76437 1.05323 1.02410 1.86079 1.23549 1.27139 1.88475 1.19050 0.91718 0.85286 0.96528 1.21522 1.01154 0.91935 1.08543 1.21382 0.95017 0.97687 0.95631 1.21384 0.94275 0.98886 1.03107 1.21042 1.01176 0.90780 0.96746 1.19789 0.91532 0.96311 1.09402 1.20491 0.83415 0.93939 0.91489 0.87642 1.86595 1.28919 1.63995 1.56927 1.21769 0.95185 0.86626 0.97618 1.45530 1.56756 1.27445 1.08460 1.17064 0.78724 0.82684 0.82860 1.90612 1.57352 1.68450 1.32759 1.23039 1.30834 1.08206 0.96496 1.82422 1.56638 1.24042 1.10645 1.25462 1.06799 1.03384 0.96855 1.21621 1.00354 0.98472 0.95708 1.18385 0.88744 0.89662 0.93039 1.20019 1.09894 1.24173 0.90762 0.89924 1.27057 0.93799 0.91426 1.06155 1.69647 1.09566 1.25905 1.36604 0.85085 0.79367 0.79968 0.74651 1.17349 1.17672 1.19747 0.87161 0.91789 0.90918 0.83275 0.82807 0.83176 0.83744 0.76309 0.92954 0.92702 0.76417 0.80505 0.84001 0.88733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.34 -8.47 9.63 -92.38 -0.89 -9.36 16 3 C 0.12 2.90 6.66 22.51 0.15 3.05 16 4 C -0.21 -3.94 9.04 22.37 0.20 -3.74 16 5 C -0.08 -1.24 10.04 22.25 0.22 -1.02 16 6 C -0.16 -2.62 10.04 22.28 0.22 -2.40 16 7 C -0.08 -1.61 9.30 22.26 0.21 -1.41 16 8 C -0.17 -4.25 5.08 -19.77 -0.10 -4.35 16 9 C 0.17 4.75 3.02 29.85 0.09 4.84 16 10 H 0.11 3.20 7.69 -2.39 -0.02 3.18 16 11 O -0.56 -14.85 12.74 -148.98 -1.90 -16.75 16 12 C 0.11 4.05 5.32 86.38 0.46 4.51 16 13 N -0.73 -30.74 5.44 -467.48 -2.54 -33.28 16 14 C 0.59 31.21 7.76 86.32 0.67 31.88 16 15 O -0.61 -36.06 14.45 -4.55 -0.07 -36.13 16 16 C -0.47 -24.97 6.51 24.67 0.16 -24.81 16 17 S 0.01 0.30 22.25 -56.49 -1.26 -0.96 16 18 C -0.19 -8.20 11.07 66.64 0.74 -7.46 16 19 C -0.13 -6.44 9.04 22.61 0.20 -6.24 16 20 C 0.11 6.36 5.68 -20.89 -0.12 6.25 16 21 C -0.42 -24.05 8.51 23.33 0.20 -23.85 16 22 H 0.08 5.11 6.04 -2.91 -0.02 5.09 16 23 C 0.04 1.80 5.39 85.37 0.46 2.26 16 24 N -0.79 -39.06 10.82 21.89 0.24 -38.82 16 25 Si 0.99 39.01 29.57 68.60 2.03 41.04 16 26 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 27 H -0.25 -9.01 7.11 99.48 0.71 -8.31 16 28 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 29 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 0.88 7.66 -2.38 -0.02 0.86 16 31 H 0.07 0.84 7.66 -2.38 -0.02 0.82 16 32 H 0.15 1.99 6.30 -2.91 -0.02 1.97 16 33 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 34 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.14 2.32 6.41 -2.91 -0.02 2.30 16 36 H 0.39 7.90 7.32 -74.05 -0.54 7.35 16 37 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.40 15.70 7.43 -92.71 -0.69 15.01 16 40 H 0.18 6.05 8.06 -2.92 -0.02 6.03 16 41 H 0.14 7.03 6.40 -2.91 -0.02 7.01 16 42 H 0.30 13.00 8.29 -92.71 -0.77 12.23 16 Total: -1.00 -72.84 368.31 0.36 -72.48 By element: Atomic # 1 Polarization: 42.98 SS G_CDS: -0.14 Total: 42.85 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: 4.88 Total: -21.06 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: -2.31 Total: -72.10 kcal Atomic # 8 Polarization: -59.38 SS G_CDS: -2.85 Total: -62.24 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -1.26 Total: -0.96 kcal Total: -72.84 0.36 -72.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866639918.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.185 kcal (2) G-P(sol) polarization free energy of solvation -72.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds