Wall clock time and date at job start Wed Apr 1 2020 04:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 S 1.81398 * 109.47257 * 294.39715 * 3 2 1 5 5 C 1.81401 * 103.00217 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47266 * 179.97438 * 5 4 3 7 7 O 1.21298 * 120.00216 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00003 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99850 * 4.74549 * 8 6 5 10 10 C 1.50697 * 109.47350 * 269.99785 * 9 8 6 11 11 H 1.08002 * 119.99897 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00200 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99857 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00005 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47388 * 59.99696 * 14 12 10 16 16 H 1.48501 * 109.47236 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47235 * 299.99757 * 14 12 10 18 18 C 1.40097 * 119.99949 * 184.74129 * 8 6 5 19 19 C 1.38843 * 120.01846 * 247.89944 * 18 8 6 20 20 C 1.38131 * 120.03832 * 180.28582 * 19 18 8 21 21 C 1.38715 * 120.15934 * 359.50513 * 20 19 18 22 22 C 1.38995 * 119.93271 * 0.40598 * 21 20 19 23 23 C 1.38655 * 119.88538 * 359.87127 * 22 21 20 24 24 O 1.36113 * 120.78453 * 180.02562 * 22 21 20 25 25 C 1.43176 * 116.73109 * 342.80135 * 24 22 21 26 26 C 1.53472 * 108.24488 * 46.18874 * 25 24 22 27 27 O 1.36205 * 119.31785 * 180.02562 * 21 20 19 28 28 H 4.62826 * 6.06313 * 179.97438 * 4 1 2 29 29 H 1.08994 * 109.47004 * 174.39616 * 3 2 1 30 30 H 1.09003 * 109.47211 * 54.39426 * 3 2 1 31 31 H 1.09004 * 109.46670 * 59.99584 * 5 4 3 32 32 H 1.08997 * 109.47036 * 300.00043 * 5 4 3 33 33 H 1.09006 * 109.46857 * 29.99839 * 9 8 6 34 34 H 1.08998 * 109.47245 * 149.99398 * 9 8 6 35 35 H 0.97001 * 119.99654 * 180.02562 * 13 12 10 36 36 H 1.07995 * 119.98413 * 0.02562 * 19 18 8 37 37 H 1.07998 * 119.92042 * 179.73902 * 20 19 18 38 38 H 1.07992 * 119.98627 * 179.97438 * 23 22 21 39 39 H 1.08996 * 109.70842 * 165.87615 * 25 24 22 40 40 H 1.08999 * 109.70321 * 286.50304 * 25 24 22 41 41 H 1.08995 * 109.70978 * 59.91994 * 26 25 24 42 42 H 1.08995 * 109.70972 * 180.55500 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 16 3.2511 -0.7055 1.5575 5 6 5.0535 -0.6210 1.3710 6 6 5.7130 -1.1799 2.6053 7 8 5.0339 -1.5950 3.5207 8 7 7.0574 -1.2196 2.6918 9 6 7.8773 -0.6255 1.6330 10 6 8.1663 -1.6633 0.5793 11 1 7.7784 -2.6655 0.6877 12 6 8.9268 -1.3339 -0.5225 13 7 9.3995 -0.1138 -0.6543 14 14 9.2855 -2.6207 -1.8283 15 1 8.0079 -3.1084 -2.4070 16 1 10.1165 -2.0184 -2.9016 17 1 10.0170 -3.7581 -1.2146 18 6 7.6708 -1.8288 3.7942 19 6 8.3755 -1.0593 4.7101 20 6 8.9854 -1.6604 5.7940 21 6 8.8875 -3.0320 5.9766 22 6 8.1812 -3.8047 5.0623 23 6 7.5740 -3.2017 3.9714 24 8 8.0738 -5.1518 5.2249 25 6 9.0037 -5.7685 6.1220 26 6 9.0654 -4.9265 7.4037 27 8 9.4952 -3.6067 7.0516 28 1 -1.0498 0.0001 0.0003 29 1 3.0089 1.0235 -0.1003 30 1 3.0097 -0.5975 -0.8355 31 1 5.3564 0.4174 1.2361 32 1 5.3565 -1.2038 0.5012 33 1 7.3402 0.2095 1.1830 34 1 8.8153 -0.2676 2.0574 35 1 9.9342 0.1180 -1.4297 36 1 8.4504 0.0093 4.5729 37 1 9.5366 -1.0605 6.5030 38 1 7.0252 -3.8006 3.2598 39 1 8.6696 -6.7780 6.3611 40 1 9.9900 -5.8069 5.6596 41 1 8.0776 -4.8822 7.8623 42 1 9.7756 -5.3703 8.1012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900554861.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:00 Heat of formation + Delta-G solvation = -14.916571 kcal Electronic energy + Delta-G solvation = -27397.969445 eV Core-core repulsion = 23437.269765 eV Total energy + Delta-G solvation = -3960.699680 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.08285 -39.62616 -37.23465 -37.08289 -34.94369 -33.99931 -32.71282 -30.99284 -30.52574 -29.42697 -28.45972 -27.85916 -26.94441 -24.53924 -23.19530 -22.61342 -21.14762 -19.41271 -18.52175 -18.17383 -17.28771 -17.17958 -16.56101 -16.28135 -16.17196 -15.55299 -15.20090 -15.01034 -14.83965 -14.50856 -14.34992 -14.27872 -14.27276 -13.77721 -13.58769 -13.38818 -13.11252 -12.78724 -12.56068 -12.27234 -12.11494 -11.78550 -11.63660 -11.18688 -11.05255 -10.94555 -10.79791 -10.54827 -10.38566 -10.37173 -10.30967 -9.95515 -9.60827 -9.41772 -8.67288 -8.50493 -8.17402 -7.55677 -7.42636 -6.29542 -4.37640 1.35512 1.55997 1.61430 2.61183 2.75968 3.04559 3.12764 3.18368 3.19182 3.23808 3.27677 3.29485 3.74696 3.99893 4.23029 4.24944 4.25611 4.76988 4.81236 4.85087 5.03734 5.11952 5.18196 5.21050 5.37921 5.40055 5.45624 5.49782 5.52138 5.67993 5.83285 5.85078 6.08016 6.09767 6.37880 6.53844 6.76185 6.82263 7.00454 7.04728 7.40645 7.50618 7.59892 7.65725 7.89154 8.00555 8.62024 8.77155 9.30649 10.77190 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.007866 B = 0.003732 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3558.613715 B = 7501.051047 C = 9828.971496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.168 4.168 3 C -0.002 4.002 4 S -0.178 6.178 5 C -0.115 4.115 6 C 0.540 3.460 7 O -0.536 6.536 8 N -0.554 5.554 9 C 0.238 3.762 10 C -0.543 4.543 11 H 0.063 0.937 12 C 0.069 3.931 13 N -0.889 5.889 14 Si 0.896 3.104 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.275 1.275 18 C 0.182 3.818 19 C -0.116 4.116 20 C -0.104 4.104 21 C 0.035 3.965 22 C 0.059 3.941 23 C -0.098 4.098 24 O -0.307 6.307 25 C 0.021 3.979 26 C 0.022 3.978 27 O -0.310 6.310 28 H 0.222 0.778 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.127 0.873 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.267 0.733 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.118 0.882 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.314 -3.278 8.167 9.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C -0.148 4.148 4 S 0.050 5.950 5 C -0.266 4.266 6 C 0.327 3.673 7 O -0.414 6.414 8 N -0.283 5.283 9 C 0.119 3.881 10 C -0.581 4.581 11 H 0.081 0.919 12 C -0.135 4.135 13 N -0.527 5.527 14 Si 0.723 3.277 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.200 1.200 18 C 0.090 3.910 19 C -0.135 4.135 20 C -0.123 4.123 21 C -0.009 4.009 22 C 0.014 3.986 23 C -0.118 4.118 24 O -0.222 6.222 25 C -0.055 4.055 26 C -0.054 4.054 27 O -0.225 6.225 28 H 0.238 0.762 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.145 0.855 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.136 0.864 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.060 -3.785 9.376 11.306 hybrid contribution 1.144 -0.391 -1.960 2.303 sum -3.915 -4.176 7.416 9.369 Atomic orbital electron populations 1.24794 0.95667 1.00569 0.99610 1.21851 0.93049 1.00837 1.01189 1.20278 0.88767 1.05120 1.00662 1.87514 1.03017 1.82695 1.21776 1.23558 0.94040 1.06814 1.02165 1.19572 0.81984 0.78717 0.87024 1.90704 1.63023 1.48282 1.39376 1.45814 1.05225 1.56045 1.21193 1.19641 0.90776 0.93880 0.83755 1.21399 1.33949 0.97582 1.05197 0.91898 1.24902 0.95031 0.95538 0.98000 1.69899 1.34650 1.18297 1.29831 0.86571 0.78637 0.81563 0.80881 1.19974 1.21041 1.19988 1.17079 0.95655 0.89891 0.88326 1.20982 0.99163 1.00205 0.93186 1.20154 1.02126 0.90678 0.99321 1.18784 1.00715 0.92773 0.88658 1.18574 1.01998 0.82551 0.95524 1.20445 1.01577 0.93941 0.95840 1.86316 1.54723 1.17936 1.63183 1.23584 0.94364 0.97485 0.90065 1.23565 1.02335 0.82419 0.97109 1.86297 1.60593 1.30511 1.45085 0.76164 0.87713 0.87594 0.86899 0.85484 0.93879 0.93833 0.92290 0.84795 0.84716 0.84890 0.86435 0.90603 0.90714 0.86465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.08 19.25 29.55 0.57 -1.51 16 2 C -0.17 -2.22 13.35 -37.12 -0.50 -2.72 16 3 C 0.00 -0.02 6.42 34.37 0.22 0.20 16 4 S -0.18 -2.98 20.83 -107.50 -2.24 -5.22 16 5 C -0.12 -2.02 5.09 36.00 0.18 -1.83 16 6 C 0.54 11.07 7.55 -10.99 -0.08 10.99 16 7 O -0.54 -12.22 15.62 5.54 0.09 -12.14 16 8 N -0.55 -11.51 2.51 -114.73 -0.29 -11.80 16 9 C 0.24 5.33 4.88 -5.20 -0.03 5.30 16 10 C -0.54 -13.42 9.16 -34.44 -0.32 -13.73 16 11 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 12 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 13 N -0.89 -23.33 13.29 55.43 0.74 -22.59 16 14 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 C 0.18 3.66 4.75 -83.66 -0.40 3.26 16 19 C -0.12 -2.03 9.68 -39.40 -0.38 -2.41 16 20 C -0.10 -1.66 9.95 -39.44 -0.39 -2.05 16 21 C 0.04 0.59 6.49 -39.12 -0.25 0.33 16 22 C 0.06 1.06 6.49 -39.15 -0.25 0.80 16 23 C -0.10 -1.95 9.46 -39.23 -0.37 -2.32 16 24 O -0.31 -4.96 10.42 -32.88 -0.34 -5.30 16 25 C 0.02 0.23 7.26 37.40 0.27 0.50 16 26 C 0.02 0.22 7.26 37.40 0.27 0.49 16 27 O -0.31 -4.46 10.42 -33.18 -0.35 -4.81 16 28 H 0.22 1.56 7.80 -54.10 -0.42 1.14 16 29 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.11 1.26 8.14 -51.92 -0.42 0.84 16 31 H 0.11 1.80 7.26 -51.92 -0.38 1.42 16 32 H 0.13 2.25 7.91 -51.93 -0.41 1.84 16 33 H 0.04 0.96 6.47 -51.93 -0.34 0.62 16 34 H 0.04 1.03 7.86 -51.93 -0.41 0.63 16 35 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 36 H 0.13 2.14 8.06 -52.49 -0.42 1.71 16 37 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.13 2.74 8.06 -52.49 -0.42 2.32 16 39 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -31.25 382.91 -8.50 -39.75 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.30 Total: 4.48 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -1.55 Total: -3.05 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.45 Total: -34.39 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.60 Total: -22.24 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: -2.98 SS G_CDS: -2.24 Total: -5.22 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.25 -8.50 -39.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900554861.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.832 kcal (2) G-P(sol) polarization free energy of solvation -31.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds