Wall clock time and date at job start Wed Apr 1 2020 04:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 S 1.81398 * 109.47257 * 294.39715 * 3 2 1 5 5 C 1.81401 * 103.00217 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47266 * 179.97438 * 5 4 3 7 7 O 1.21298 * 120.00216 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00003 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99850 * 4.74549 * 8 6 5 10 10 C 1.50697 * 109.47350 * 269.99785 * 9 8 6 11 11 H 1.08002 * 119.99897 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00200 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99857 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00005 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47388 * 59.99696 * 14 12 10 16 16 H 1.48501 * 109.47236 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47235 * 299.99757 * 14 12 10 18 18 C 1.40097 * 119.99949 * 184.74129 * 8 6 5 19 19 C 1.38843 * 120.01846 * 247.89944 * 18 8 6 20 20 C 1.38131 * 120.03832 * 180.28582 * 19 18 8 21 21 C 1.38715 * 120.15934 * 359.50513 * 20 19 18 22 22 C 1.38995 * 119.93271 * 0.40598 * 21 20 19 23 23 C 1.38655 * 119.88538 * 359.87127 * 22 21 20 24 24 O 1.36113 * 120.78453 * 180.02562 * 22 21 20 25 25 C 1.43176 * 116.73109 * 342.80135 * 24 22 21 26 26 C 1.53472 * 108.24488 * 46.18874 * 25 24 22 27 27 O 1.36205 * 119.31785 * 180.02562 * 21 20 19 28 28 H 4.62826 * 6.06313 * 179.97438 * 4 1 2 29 29 H 1.08994 * 109.47004 * 174.39616 * 3 2 1 30 30 H 1.09003 * 109.47211 * 54.39426 * 3 2 1 31 31 H 1.09004 * 109.46670 * 59.99584 * 5 4 3 32 32 H 1.08997 * 109.47036 * 300.00043 * 5 4 3 33 33 H 1.09006 * 109.46857 * 29.99839 * 9 8 6 34 34 H 1.08998 * 109.47245 * 149.99398 * 9 8 6 35 35 H 0.97001 * 119.99654 * 180.02562 * 13 12 10 36 36 H 1.07995 * 119.98413 * 0.02562 * 19 18 8 37 37 H 1.07998 * 119.92042 * 179.73902 * 20 19 18 38 38 H 1.07992 * 119.98627 * 179.97438 * 23 22 21 39 39 H 1.08996 * 109.70842 * 165.87615 * 25 24 22 40 40 H 1.08999 * 109.70321 * 286.50304 * 25 24 22 41 41 H 1.08995 * 109.70978 * 59.91994 * 26 25 24 42 42 H 1.08995 * 109.70972 * 180.55500 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 16 3.2511 -0.7055 1.5575 5 6 5.0535 -0.6210 1.3710 6 6 5.7130 -1.1799 2.6053 7 8 5.0339 -1.5950 3.5207 8 7 7.0574 -1.2196 2.6918 9 6 7.8773 -0.6255 1.6330 10 6 8.1663 -1.6633 0.5793 11 1 7.7784 -2.6655 0.6877 12 6 8.9268 -1.3339 -0.5225 13 7 9.3995 -0.1138 -0.6543 14 14 9.2855 -2.6207 -1.8283 15 1 8.0079 -3.1084 -2.4070 16 1 10.1165 -2.0184 -2.9016 17 1 10.0170 -3.7581 -1.2146 18 6 7.6708 -1.8288 3.7942 19 6 8.3755 -1.0593 4.7101 20 6 8.9854 -1.6604 5.7940 21 6 8.8875 -3.0320 5.9766 22 6 8.1812 -3.8047 5.0623 23 6 7.5740 -3.2017 3.9714 24 8 8.0738 -5.1518 5.2249 25 6 9.0037 -5.7685 6.1220 26 6 9.0654 -4.9265 7.4037 27 8 9.4952 -3.6067 7.0516 28 1 -1.0498 0.0001 0.0003 29 1 3.0089 1.0235 -0.1003 30 1 3.0097 -0.5975 -0.8355 31 1 5.3564 0.4174 1.2361 32 1 5.3565 -1.2038 0.5012 33 1 7.3402 0.2095 1.1830 34 1 8.8153 -0.2676 2.0574 35 1 9.9342 0.1180 -1.4297 36 1 8.4504 0.0093 4.5729 37 1 9.5366 -1.0605 6.5030 38 1 7.0252 -3.8006 3.2598 39 1 8.6696 -6.7780 6.3611 40 1 9.9900 -5.8069 5.6596 41 1 8.0776 -4.8822 7.8623 42 1 9.7756 -5.3703 8.1012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900554861.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:59 Heat of formation + Delta-G solvation = -31.778370 kcal Electronic energy + Delta-G solvation = -27398.700627 eV Core-core repulsion = 23437.269765 eV Total energy + Delta-G solvation = -3961.430863 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.30351 -41.15851 -38.63973 -38.24352 -36.58702 -34.94192 -34.57323 -32.20673 -31.88216 -30.71350 -29.57412 -29.36159 -28.45873 -25.72170 -24.92852 -24.05690 -22.39318 -20.74710 -19.64135 -19.27934 -18.87436 -18.53611 -18.10424 -17.81199 -17.49958 -16.88390 -16.57031 -16.40613 -16.21843 -15.92060 -15.41374 -15.40069 -15.37236 -14.99649 -14.90260 -14.77829 -14.43010 -14.29923 -14.01599 -13.64105 -13.55805 -13.48795 -13.02670 -12.94690 -12.67250 -12.27638 -12.04587 -12.00689 -11.83399 -11.62297 -11.50881 -11.31134 -11.07945 -10.79134 -10.61229 -10.05432 -9.60654 -8.95606 -8.75576 -8.23434 -6.37344 0.08661 0.22699 0.24071 1.35817 1.40454 1.42030 1.46584 1.51985 1.83360 1.93720 2.07594 2.24318 2.34588 2.42403 2.62502 3.07647 3.27464 3.35669 3.58616 3.64333 3.95978 4.03579 4.05850 4.12741 4.19286 4.24200 4.35623 4.38967 4.41137 4.46057 4.58315 4.64514 4.79133 4.96290 5.02718 5.03955 5.12280 5.33758 5.40842 5.65538 5.81787 5.89817 5.99294 6.32430 6.38211 6.59894 6.71159 7.10387 7.34292 8.81853 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.007866 B = 0.003732 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3558.613715 B = 7501.051047 C = 9828.971496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.223 4.223 3 C 0.014 3.986 4 S -0.221 6.221 5 C -0.103 4.103 6 C 0.534 3.466 7 O -0.563 6.563 8 N -0.553 5.553 9 C 0.252 3.748 10 C -0.549 4.549 11 H 0.049 0.951 12 C 0.032 3.968 13 N -0.913 5.913 14 Si 0.948 3.052 15 H -0.269 1.269 16 H -0.279 1.279 17 H -0.279 1.279 18 C 0.150 3.850 19 C -0.122 4.122 20 C -0.097 4.097 21 C 0.039 3.961 22 C 0.054 3.946 23 C -0.124 4.124 24 O -0.328 6.328 25 C 0.011 3.989 26 C 0.016 3.984 27 O -0.314 6.314 28 H 0.259 0.741 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.046 0.954 34 H 0.029 0.971 35 H 0.270 0.730 36 H 0.147 0.853 37 H 0.168 0.832 38 H 0.110 0.890 39 H 0.155 0.845 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.322 -3.742 8.854 10.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.225 4.225 3 C -0.133 4.133 4 S 0.008 5.992 5 C -0.253 4.253 6 C 0.323 3.677 7 O -0.443 6.443 8 N -0.281 5.281 9 C 0.133 3.867 10 C -0.587 4.587 11 H 0.068 0.932 12 C -0.170 4.170 13 N -0.551 5.551 14 Si 0.774 3.226 15 H -0.194 1.194 16 H -0.204 1.204 17 H -0.205 1.205 18 C 0.059 3.941 19 C -0.141 4.141 20 C -0.116 4.116 21 C -0.006 4.006 22 C 0.009 3.991 23 C -0.144 4.144 24 O -0.243 6.243 25 C -0.064 4.064 26 C -0.059 4.059 27 O -0.229 6.229 28 H 0.275 0.725 29 H 0.138 0.862 30 H 0.133 0.867 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.079 0.921 36 H 0.164 0.836 37 H 0.185 0.815 38 H 0.128 0.872 39 H 0.173 0.827 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.052 -4.267 10.079 12.055 hybrid contribution 1.095 -0.365 -2.053 2.356 sum -3.957 -4.632 8.025 10.076 Atomic orbital electron populations 1.25775 0.96545 0.98223 0.96843 1.22168 0.93694 1.03055 1.03543 1.20255 0.89222 1.05716 0.98058 1.87577 1.02517 1.83626 1.25506 1.23409 0.94511 1.07195 1.00229 1.20042 0.81830 0.78269 0.87594 1.90671 1.63425 1.49547 1.40629 1.45744 1.05259 1.55859 1.21202 1.19340 0.90344 0.93392 0.83591 1.21534 1.33845 0.97423 1.05941 0.93243 1.25491 0.94890 0.97024 0.99550 1.69968 1.35239 1.19484 1.30455 0.85751 0.78578 0.79367 0.78894 1.19356 1.20359 1.20499 1.17402 0.97252 0.90371 0.89113 1.21168 0.98922 1.00777 0.93269 1.20508 1.01194 0.90917 0.98946 1.18893 0.99750 0.93035 0.88897 1.18595 1.01678 0.83684 0.95187 1.20383 1.03027 0.94077 0.96906 1.86282 1.56316 1.17020 1.64674 1.24043 0.93886 0.98975 0.89475 1.23979 1.04064 0.80449 0.97362 1.86294 1.60310 1.32500 1.43782 0.72483 0.86166 0.86743 0.85457 0.85998 0.93601 0.95280 0.92118 0.83563 0.81478 0.87170 0.82699 0.90260 0.90271 0.82057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 19.25 74.32 1.43 -1.64 16 2 C -0.22 -5.66 13.35 31.13 0.42 -5.25 16 3 C 0.01 0.36 6.42 70.18 0.45 0.81 16 4 S -0.22 -7.56 20.83 -56.49 -1.18 -8.73 16 5 C -0.10 -3.73 5.09 71.23 0.36 -3.37 16 6 C 0.53 22.92 7.55 87.65 0.66 23.58 16 7 O -0.56 -26.91 15.62 -3.09 -0.05 -26.96 16 8 N -0.55 -23.99 2.51 -635.27 -1.59 -25.59 16 9 C 0.25 11.68 4.88 85.63 0.42 12.10 16 10 C -0.55 -27.84 9.16 25.60 0.23 -27.61 16 11 H 0.05 2.60 7.81 -2.91 -0.02 2.58 16 12 C 0.03 1.62 5.46 84.65 0.46 2.08 16 13 N -0.91 -48.12 13.29 21.45 0.28 -47.83 16 14 Si 0.95 40.98 29.54 68.60 2.03 43.00 16 15 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 16 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 18 C 0.15 6.28 4.75 38.09 0.18 6.46 16 19 C -0.12 -4.33 9.68 22.39 0.22 -4.12 16 20 C -0.10 -3.00 9.95 22.36 0.22 -2.78 16 21 C 0.04 1.28 6.49 22.57 0.15 1.43 16 22 C 0.05 1.98 6.49 22.55 0.15 2.13 16 23 C -0.12 -5.20 9.46 22.49 0.21 -4.99 16 24 O -0.33 -10.56 10.42 -82.61 -0.86 -11.42 16 25 C 0.01 0.21 7.26 72.14 0.52 0.73 16 26 C 0.02 0.28 7.26 72.14 0.52 0.81 16 27 O -0.31 -8.30 10.42 -83.67 -0.87 -9.18 16 28 H 0.26 2.68 7.80 -4.42 -0.03 2.65 16 29 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.13 4.14 7.26 -2.39 -0.02 4.13 16 32 H 0.12 4.50 7.91 -2.39 -0.02 4.48 16 33 H 0.05 2.08 6.47 -2.38 -0.02 2.07 16 34 H 0.03 1.43 7.86 -2.39 -0.02 1.41 16 35 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 36 H 0.15 4.69 8.06 -2.91 -0.02 4.67 16 37 H 0.17 4.00 8.06 -2.91 -0.02 3.97 16 38 H 0.11 4.97 8.06 -2.91 -0.02 4.94 16 39 H 0.16 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.16 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -69.71 382.91 5.40 -64.30 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 1.04 Total: 22.02 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 6.61 Total: 0.37 kcal Atomic # 7 Polarization: -72.11 SS G_CDS: -1.31 Total: -73.42 kcal Atomic # 8 Polarization: -45.77 SS G_CDS: -1.78 Total: -47.55 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.00 kcal Atomic # 16 Polarization: -7.56 SS G_CDS: -1.18 Total: -8.73 kcal Total: -69.71 5.40 -64.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900554861.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.524 kcal (2) G-P(sol) polarization free energy of solvation -69.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds