Wall clock time and date at job start Wed Apr 1 2020 04:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 120.00373 * 2 1 4 4 H 1.48494 * 109.47223 * 270.00012 * 3 2 1 5 5 H 1.48504 * 109.47046 * 29.99926 * 3 2 1 6 6 H 1.48494 * 109.46997 * 149.99810 * 3 2 1 7 7 C 1.38797 * 119.99562 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00434 * 0.02562 * 7 2 1 9 9 S 1.76203 * 120.00024 * 180.02562 * 7 2 1 10 10 C 1.80992 * 100.00323 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47225 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47152 * 180.02562 * 11 10 9 13 13 O 1.45199 * 109.47183 * 179.97438 * 12 11 10 14 14 C 1.34225 * 117.00173 * 179.97438 * 13 12 11 15 15 O 1.20828 * 119.99795 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00258 * 179.97438 * 14 13 12 17 17 H 1.09001 * 115.56397 * 297.68690 * 16 14 13 18 18 C 1.53140 * 117.51864 * 151.87036 * 16 14 13 19 19 C 1.52336 * 59.82635 * 252.55696 * 18 16 14 20 20 C 1.50786 * 121.76547 * 248.91473 * 19 18 16 21 21 O 1.21286 * 126.61724 * 36.18283 * 20 19 18 22 22 N 1.34607 * 106.76305 * 216.20584 * 20 19 18 23 23 C 1.39611 * 112.21628 * 0.02562 * 22 20 19 24 24 C 1.39322 * 130.80973 * 179.97438 * 23 22 20 25 25 C 1.37925 * 120.18968 * 180.02562 * 24 23 22 26 26 C 1.38310 * 120.34953 * 359.97438 * 25 24 23 27 27 C 1.38368 * 119.82865 * 359.97438 * 26 25 24 28 28 C 1.37681 * 119.98824 * 359.97438 * 27 26 25 29 29 H 0.96999 * 119.99316 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47110 * 299.99897 * 10 9 7 31 31 H 1.09001 * 109.47579 * 59.99764 * 10 9 7 32 32 H 1.08997 * 109.46973 * 299.99352 * 11 10 9 33 33 H 1.08998 * 109.47561 * 59.99720 * 11 10 9 34 34 H 1.09001 * 109.47130 * 299.99526 * 12 11 10 35 35 H 1.08998 * 109.47133 * 59.99437 * 12 11 10 36 36 H 1.08997 * 117.51563 * 359.97438 * 18 16 14 37 37 H 1.08997 * 117.51694 * 145.12539 * 18 16 14 38 38 H 0.96997 * 123.88865 * 180.02562 * 22 20 19 39 39 H 1.08008 * 119.90507 * 0.02694 * 24 23 22 40 40 H 1.08001 * 119.82733 * 179.97438 * 25 24 23 41 41 H 1.07998 * 120.08620 * 180.02562 * 26 25 24 42 42 H 1.08000 * 120.00312 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4980 2.0463 -1.4000 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0014 9 16 3.7722 -1.2022 0.0001 10 6 4.0865 -2.9846 -0.0017 11 6 5.5956 -3.2365 -0.0008 12 6 5.8613 -4.7433 -0.0030 13 8 7.2935 -4.9823 -0.0027 14 6 7.6977 -6.2622 -0.0040 15 8 6.8818 -7.1534 -0.0058 16 6 9.1691 -6.5877 -0.0044 17 1 9.7270 -6.2424 -0.8748 18 6 9.6012 -7.9106 0.6346 19 6 9.8897 -6.5904 1.3378 20 6 11.2934 -6.0600 1.4858 21 8 12.1926 -6.1575 0.6776 22 7 11.3562 -5.4580 2.6881 23 6 10.1426 -5.5231 3.3750 24 6 9.7787 -5.0364 4.6288 25 6 8.4973 -5.2276 5.1018 26 6 7.5634 -5.9026 4.3369 27 6 7.9163 -6.3882 3.0902 28 6 9.1942 -6.1984 2.6142 29 1 -0.4849 0.8401 0.0004 30 1 3.6432 -3.4327 0.8876 31 1 3.6439 -3.4308 -0.8923 32 1 6.0393 -2.7885 -0.8899 33 1 6.0379 -2.7905 0.8900 34 1 5.4176 -5.1917 0.8859 35 1 5.4190 -5.1888 -0.8940 36 1 8.8212 -8.5450 1.0555 37 1 10.4435 -8.4358 0.1844 38 1 12.1529 -5.0285 3.0369 39 1 10.5022 -4.5078 5.2320 40 1 8.2217 -4.8482 6.0747 41 1 6.5611 -6.0495 4.7113 42 1 7.1894 -6.9161 2.4907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909960820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:02 Heat of formation + Delta-G solvation = -82.822836 kcal Electronic energy + Delta-G solvation = -26962.681610 eV Core-core repulsion = 22999.037293 eV Total energy + Delta-G solvation = -3963.644317 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.00639 -41.50246 -39.57244 -38.37512 -37.24554 -36.67634 -34.94701 -34.68090 -31.90077 -30.29747 -28.61879 -27.89835 -27.13501 -25.52013 -23.67820 -22.80384 -22.68325 -21.78083 -21.10618 -19.64774 -19.11775 -18.69305 -18.22874 -17.79435 -17.66521 -17.10535 -16.81182 -16.54000 -16.42995 -16.08343 -15.70378 -15.35926 -14.98304 -14.91204 -14.76902 -14.27127 -14.17691 -14.07611 -13.93990 -13.47230 -13.33572 -13.10463 -13.05596 -12.63522 -12.49425 -12.45850 -12.36300 -12.23212 -11.95227 -11.85216 -11.81497 -11.64069 -11.54905 -11.29588 -11.16722 -10.60127 -9.84895 -9.10545 -9.00810 -8.51999 -6.24040 -0.05987 0.26593 0.84071 1.03526 1.25783 1.32853 1.34107 1.48728 1.76106 1.85311 2.24598 2.49036 2.65997 2.79844 2.86232 2.86917 3.06924 3.13571 3.50003 3.59084 3.80664 3.84773 3.92437 4.09092 4.12015 4.23727 4.28534 4.37084 4.43366 4.46715 4.52725 4.60439 4.63882 4.75860 4.91782 4.96674 5.05361 5.05911 5.32540 5.35988 5.46775 5.54100 5.66955 5.69766 5.96574 6.10737 6.53677 6.80217 6.91879 8.61033 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.014388 B = 0.002342 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.610326 B =11954.346327 C =12535.119925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.038 3.962 3 Si 0.924 3.076 4 H -0.262 1.262 5 H -0.263 1.263 6 H -0.227 1.227 7 C -0.523 4.523 8 H 0.052 0.948 9 S -0.209 6.209 10 C -0.072 4.072 11 C -0.088 4.088 12 C 0.078 3.922 13 O -0.351 6.351 14 C 0.499 3.501 15 O -0.517 6.517 16 C -0.118 4.118 17 H 0.168 0.832 18 C -0.071 4.071 19 C -0.132 4.132 20 C 0.566 3.434 21 O -0.523 6.523 22 N -0.644 5.644 23 C 0.134 3.866 24 C -0.130 4.130 25 C -0.080 4.080 26 C -0.138 4.138 27 C -0.081 4.081 28 C -0.128 4.128 29 H 0.277 0.723 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.147 0.853 38 H 0.429 0.571 39 H 0.156 0.844 40 H 0.161 0.839 41 H 0.144 0.856 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.072 -14.782 9.697 30.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.167 4.167 3 Si 0.745 3.255 4 H -0.187 1.187 5 H -0.188 1.188 6 H -0.150 1.150 7 C -0.671 4.671 8 H 0.071 0.929 9 S 0.019 5.981 10 C -0.220 4.220 11 C -0.126 4.126 12 C 0.003 3.997 13 O -0.267 6.267 14 C 0.342 3.658 15 O -0.406 6.406 16 C -0.137 4.137 17 H 0.185 0.815 18 C -0.108 4.108 19 C -0.136 4.136 20 C 0.354 3.646 21 O -0.399 6.399 22 N -0.288 5.288 23 C 0.037 3.963 24 C -0.151 4.151 25 C -0.098 4.098 26 C -0.157 4.157 27 C -0.100 4.100 28 C -0.130 4.130 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.145 0.855 37 H 0.165 0.835 38 H 0.270 0.730 39 H 0.174 0.826 40 H 0.178 0.822 41 H 0.162 0.838 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 25.809 -14.135 9.177 30.824 hybrid contribution -1.239 -0.114 -0.116 1.250 sum 24.570 -14.250 9.061 29.814 Atomic orbital electron populations 1.70041 1.07673 1.29137 1.49145 1.25770 0.95401 1.02769 0.92733 0.85728 0.80835 0.78667 0.80223 1.18683 1.18767 1.15024 1.22337 0.89995 0.96339 1.58411 0.92930 1.83860 1.07581 1.09042 1.97591 1.22953 0.98622 0.96103 1.04368 1.21136 0.93044 0.93625 1.04828 1.23087 0.76506 0.96759 1.03348 1.86477 1.28413 1.28683 1.83090 1.22593 0.91049 0.80664 0.71496 1.90684 1.55530 1.48366 1.46036 1.21820 0.88888 1.05754 0.97264 0.81453 1.23289 1.03840 0.87397 0.96292 1.20275 0.94138 1.06995 0.92195 1.19250 0.87845 0.76750 0.80796 1.90804 1.44422 1.58915 1.45760 1.43382 1.13239 1.54810 1.17340 1.18277 0.84977 0.98674 0.94324 1.20738 0.98413 1.02800 0.93118 1.21312 0.91667 0.96133 1.00735 1.21375 1.01191 0.99283 0.93834 1.20388 0.93742 0.99147 0.96686 1.19003 0.94948 1.04573 0.94516 0.91378 0.90761 0.91015 0.89905 0.89855 0.90366 0.90537 0.85517 0.83481 0.73003 0.82627 0.82167 0.83779 0.86695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.25 13.97 21.65 0.30 -55.95 16 2 C 0.04 2.21 5.50 84.86 0.47 2.68 16 3 Si 0.92 43.36 27.74 68.60 1.90 45.26 16 4 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.23 -10.17 6.74 99.48 0.67 -9.50 16 7 C -0.52 -30.32 10.04 67.95 0.68 -29.64 16 8 H 0.05 3.31 8.03 -2.91 -0.02 3.29 16 9 S -0.21 -9.76 19.41 -56.49 -1.10 -10.85 16 10 C -0.07 -2.62 5.67 71.98 0.41 -2.21 16 11 C -0.09 -2.49 5.60 30.60 0.17 -2.32 16 12 C 0.08 1.97 5.47 71.98 0.39 2.37 16 13 O -0.35 -8.75 10.22 -51.37 -0.52 -9.28 16 14 C 0.50 11.50 5.73 71.23 0.41 11.91 16 15 O -0.52 -13.80 15.83 21.96 0.35 -13.45 16 16 C -0.12 -2.11 6.16 -11.71 -0.07 -2.18 16 17 H 0.17 2.52 8.14 -2.39 -0.02 2.50 16 18 C -0.07 -1.00 9.80 30.42 0.30 -0.70 16 19 C -0.13 -2.35 2.42 -54.13 -0.13 -2.48 16 20 C 0.57 10.83 8.47 87.71 0.74 11.58 16 21 O -0.52 -12.60 18.03 -3.05 -0.05 -12.65 16 22 N -0.64 -9.42 5.90 -303.37 -1.79 -11.21 16 23 C 0.13 2.09 7.12 38.37 0.27 2.36 16 24 C -0.13 -1.51 10.07 22.46 0.23 -1.29 16 25 C -0.08 -0.93 10.02 22.21 0.22 -0.71 16 26 C -0.14 -2.06 10.07 22.32 0.22 -1.83 16 27 C -0.08 -1.49 9.26 22.17 0.21 -1.28 16 28 C -0.13 -2.34 5.73 -19.84 -0.11 -2.46 16 29 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 30 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.08 2.32 8.14 -2.39 -0.02 2.31 16 33 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.08 1.90 8.13 -2.39 -0.02 1.88 16 35 H 0.08 1.90 8.13 -2.39 -0.02 1.88 16 36 H 0.13 1.72 7.95 -2.39 -0.02 1.70 16 37 H 0.15 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.43 4.03 8.96 -92.71 -0.83 3.20 16 39 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 40 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 41 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 42 H 0.12 2.31 6.80 -2.91 -0.02 2.29 16 Total: -1.00 -73.41 378.50 3.69 -69.73 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.19 Total: 14.61 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: 4.41 Total: -16.20 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: -1.49 Total: -67.17 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -0.23 Total: -35.38 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.90 Total: 45.26 kcal Atomic # 16 Polarization: -9.76 SS G_CDS: -1.10 Total: -10.85 kcal Total: -73.41 3.69 -69.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909960820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.096 kcal (2) G-P(sol) polarization free energy of solvation -73.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds