Wall clock time and date at job start Wed Apr 1 2020 04:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86796 * 119.99882 * 2 1 4 4 H 1.48498 * 109.47234 * 275.38330 * 3 2 1 5 5 H 1.48496 * 109.47280 * 35.38510 * 3 2 1 6 6 H 1.48506 * 109.47136 * 155.38280 * 3 2 1 7 7 C 1.39945 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99910 * 342.25447 * 7 2 1 9 9 C 1.41398 * 119.99918 * 162.25531 * 7 2 1 10 10 C 1.40569 * 120.07827 * 329.45988 * 9 7 2 11 11 C 1.37598 * 119.53508 * 180.12102 * 10 9 7 12 12 C 1.38427 * 120.14774 * 0.05219 * 11 10 9 13 13 C 1.39146 * 120.91910 * 359.95924 * 12 11 10 14 14 C 1.37251 * 119.86301 * 359.85208 * 13 12 11 15 15 C 1.50677 * 121.80872 * 180.56918 * 14 13 12 16 16 C 1.52902 * 109.98321 * 343.06438 * 15 14 13 17 17 N 1.47172 * 108.45620 * 50.26724 * 16 15 14 18 18 C 1.46899 * 111.00117 * 165.51553 * 17 16 15 19 19 C 1.52998 * 109.47465 * 189.02084 * 18 17 16 20 20 S 1.81395 * 109.47561 * 179.97438 * 19 18 17 21 21 O 1.42097 * 109.47019 * 296.39469 * 20 19 18 22 22 C 1.81397 * 103.00047 * 179.97438 * 20 19 18 23 23 F 1.39895 * 109.47095 * 60.00287 * 22 20 19 24 24 F 1.39893 * 109.47466 * 300.00113 * 22 20 19 25 25 F 1.39902 * 109.46774 * 179.97438 * 22 20 19 26 26 C 1.46624 * 110.23939 * 288.92682 * 17 16 15 27 27 H 0.97000 * 120.00206 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.23199 * 0.10022 * 10 9 7 29 29 H 1.08002 * 119.92344 * 180.02562 * 11 10 9 30 30 H 1.08006 * 119.54200 * 179.97438 * 12 11 10 31 31 H 1.08998 * 109.38375 * 103.21712 * 15 14 13 32 32 H 1.08993 * 109.38913 * 223.01543 * 15 14 13 33 33 H 1.09000 * 109.64329 * 290.57876 * 16 15 14 34 34 H 1.09001 * 109.63902 * 169.95848 * 16 15 14 35 35 H 1.09002 * 109.47069 * 69.01752 * 18 17 16 36 36 H 1.08996 * 109.47019 * 309.02384 * 18 17 16 37 37 H 1.08999 * 109.46858 * 59.99432 * 19 18 17 38 38 H 1.08998 * 109.46764 * 300.00334 * 19 18 17 39 39 H 1.08998 * 109.26031 * 172.80612 * 26 17 16 40 40 H 1.08995 * 109.26069 * 292.30154 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3759 2.1121 -1.3939 5 1 1.5012 2.6171 0.8107 6 1 3.5920 1.4100 0.5832 7 6 2.0079 -1.2120 -0.0005 8 1 1.5064 -2.1251 0.2841 9 6 3.3714 -1.2410 -0.3738 10 6 3.8661 -0.3141 -1.3077 11 6 5.1944 -0.3539 -1.6647 12 6 6.0358 -1.3017 -1.1079 13 6 5.5594 -2.2252 -0.1825 14 6 4.2387 -2.2002 0.1902 15 6 3.6793 -3.1711 1.1975 16 6 4.6330 -4.3539 1.3689 17 7 5.9869 -3.8296 1.6099 18 6 6.8764 -4.8824 2.1180 19 6 8.1996 -4.2593 2.5672 20 16 9.2978 -5.5592 3.1954 21 8 8.7184 -6.1518 4.3496 22 6 10.7881 -4.6403 3.6699 23 9 10.4611 -3.6940 4.6470 24 9 11.3120 -3.9897 2.5477 25 9 11.7403 -5.5284 4.1816 26 6 6.5256 -3.2332 0.3835 27 1 -0.4850 0.8400 -0.0004 28 1 3.2081 0.4240 -1.7421 29 1 5.5811 0.3555 -2.3813 30 1 7.0766 -1.3244 -1.3954 31 1 3.5533 -2.6663 2.1553 32 1 2.7124 -3.5354 0.8506 33 1 4.6310 -4.9604 0.4632 34 1 4.3176 -4.9587 2.2191 35 1 7.0667 -5.6096 1.3287 36 1 6.4035 -5.3803 2.9644 37 1 8.0093 -3.5320 3.3565 38 1 8.6725 -3.7613 1.7207 39 1 7.4703 -2.7385 0.6092 40 1 6.6977 -4.0183 -0.3526 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931332344.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:38 Heat of formation + Delta-G solvation = -153.112849 kcal Electronic energy + Delta-G solvation = -27911.934494 eV Core-core repulsion = 23403.385433 eV Total energy + Delta-G solvation = -4508.549061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.091 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -50.29164 -47.96579 -47.93954 -39.30251 -37.00131 -36.87635 -33.71473 -33.05362 -31.42738 -29.72982 -28.77382 -26.82270 -25.05103 -24.90020 -22.71603 -21.86340 -20.51071 -19.78851 -18.91808 -18.83181 -18.77260 -18.01497 -17.17395 -16.20578 -15.84592 -15.58096 -15.09329 -15.03833 -14.78520 -14.60612 -14.53815 -14.35061 -14.28955 -14.06635 -14.05663 -13.96409 -13.55080 -13.20349 -13.03729 -12.80530 -12.61512 -12.48482 -11.99712 -11.71148 -11.56093 -11.48397 -11.13490 -10.91776 -10.85456 -10.74580 -10.49797 -10.00443 -9.74458 -9.41873 -9.40358 -9.11324 -8.29070 -7.53053 -7.45911 -6.95117 -4.49005 -0.10081 1.25571 2.47024 2.56483 2.58627 3.08268 3.10762 3.21318 3.32623 3.65280 3.76403 3.97849 4.02213 4.38844 4.45678 4.53010 5.09482 5.20422 5.27723 5.33807 5.48220 5.62739 5.73273 5.78685 5.87995 5.91038 6.06966 6.18218 6.46242 6.58328 6.60988 6.83801 6.88796 7.04353 7.18156 7.24757 7.45330 7.67628 7.70067 7.87188 8.08382 8.34360 8.64263 8.79647 10.07005 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.020306 B = 0.002511 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.591000 B =11146.509848 C =11592.720386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.085 3.915 3 Si 0.910 3.090 4 H -0.272 1.272 5 H -0.292 1.292 6 H -0.245 1.245 7 C -0.447 4.447 8 H 0.093 0.907 9 C 0.094 3.906 10 C -0.240 4.240 11 C -0.080 4.080 12 C -0.238 4.238 13 C -0.053 4.053 14 C -0.155 4.155 15 C -0.050 4.050 16 C 0.054 3.946 17 N -0.525 5.525 18 C 0.073 3.927 19 C -0.441 4.441 20 S 1.303 4.697 21 O -0.764 6.764 22 C 0.118 3.882 23 F -0.193 7.193 24 F -0.168 7.168 25 F -0.174 7.174 26 C 0.099 3.901 27 H 0.284 0.716 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.083 0.917 37 H 0.118 0.882 38 H 0.138 0.862 39 H 0.078 0.922 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.285 -11.136 1.980 20.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.133 4.133 3 Si 0.737 3.263 4 H -0.198 1.198 5 H -0.220 1.220 6 H -0.168 1.168 7 C -0.475 4.475 8 H 0.111 0.889 9 C 0.091 3.909 10 C -0.259 4.259 11 C -0.098 4.098 12 C -0.258 4.258 13 C -0.053 4.053 14 C -0.157 4.157 15 C -0.087 4.087 16 C -0.073 4.073 17 N -0.250 5.250 18 C -0.057 4.057 19 C -0.582 4.582 20 S 1.485 4.515 21 O -0.759 6.759 22 C -0.019 4.019 23 F -0.175 7.175 24 F -0.150 7.150 25 F -0.156 7.156 26 C -0.028 4.028 27 H 0.095 0.905 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.137 0.863 38 H 0.156 0.844 39 H 0.096 0.904 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 16.977 -11.590 2.536 20.711 hybrid contribution 0.200 2.072 0.862 2.253 sum 17.177 -9.517 3.398 19.929 Atomic orbital electron populations 1.69688 1.08060 1.30178 1.35599 1.26119 0.94662 1.01652 0.90895 0.86327 0.81359 0.79911 0.78710 1.19806 1.21996 1.16768 1.19474 0.92886 0.95939 1.39214 0.88904 1.17652 0.92869 0.90715 0.89653 1.20978 0.95629 1.05105 1.04221 1.20486 0.93902 0.97145 0.98278 1.20193 0.98143 1.01563 1.05854 1.18989 0.93182 0.96099 0.97073 1.19310 0.92181 1.02414 1.01755 1.20161 0.96743 0.93348 0.98467 1.22276 0.88203 0.97343 0.99484 1.62287 1.02179 1.29668 1.30853 1.21669 0.90730 0.93152 1.00117 1.27700 1.07148 1.13022 1.10306 1.73041 0.87905 0.88503 1.02012 1.93205 1.72879 1.60370 1.49454 1.32735 1.04936 0.85925 0.78289 1.93217 1.92228 1.67747 1.64352 1.93173 1.88913 1.82422 1.50454 1.93165 1.67906 1.67167 1.87363 1.20959 0.97273 0.95775 0.88795 0.90529 0.88319 0.88943 0.89013 0.91381 0.90960 0.94476 0.91150 0.93435 0.89894 0.86298 0.84390 0.90393 0.94262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.31 13.93 55.55 0.77 -20.54 16 2 C 0.09 2.20 5.40 -17.34 -0.09 2.10 16 3 Si 0.91 20.82 24.52 -169.99 -4.17 16.66 16 4 H -0.27 -6.05 6.72 56.52 0.38 -5.67 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.24 -5.80 6.86 56.52 0.39 -5.41 16 7 C -0.45 -11.61 8.84 -37.74 -0.33 -11.94 16 8 H 0.09 2.49 6.68 -52.49 -0.35 2.14 16 9 C 0.09 2.30 5.10 -106.74 -0.54 1.75 16 10 C -0.24 -5.68 7.16 -38.94 -0.28 -5.96 16 11 C -0.08 -1.68 10.02 -39.75 -0.40 -2.08 16 12 C -0.24 -4.67 9.65 -39.18 -0.38 -5.04 16 13 C -0.05 -1.04 5.79 -104.66 -0.61 -1.64 16 14 C -0.16 -3.38 5.83 -103.91 -0.61 -3.99 16 15 C -0.05 -0.95 5.27 -27.94 -0.15 -1.10 16 16 C 0.05 0.81 5.58 -3.73 -0.02 0.79 16 17 N -0.52 -7.40 4.69 -236.17 -1.11 -8.50 16 18 C 0.07 0.72 4.95 -3.83 -0.02 0.70 16 19 C -0.44 -3.54 5.81 37.16 0.22 -3.33 16 20 S 1.30 8.46 13.19 -107.50 -1.42 7.05 16 21 O -0.76 -8.94 18.14 -35.23 -0.64 -9.57 16 22 C 0.12 1.08 3.50 101.05 0.35 1.44 16 23 F -0.19 -2.35 17.34 2.25 0.04 -2.31 16 24 F -0.17 -1.43 17.34 2.25 0.04 -1.39 16 25 F -0.17 -1.76 17.36 2.25 0.04 -1.72 16 26 C 0.10 1.46 4.89 -5.14 -0.03 1.43 16 27 H 0.28 6.81 8.30 -40.82 -0.34 6.48 16 28 H 0.10 2.36 4.78 -52.49 -0.25 2.10 16 29 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 30 H 0.09 1.54 8.06 -52.48 -0.42 1.12 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.07 1.40 6.75 -51.93 -0.35 1.05 16 33 H 0.04 0.53 8.05 -51.93 -0.42 0.11 16 34 H 0.07 0.91 7.87 -51.93 -0.41 0.50 16 35 H 0.05 0.33 8.07 -51.93 -0.42 -0.08 16 36 H 0.08 0.82 7.91 -51.93 -0.41 0.41 16 37 H 0.12 1.17 8.14 -51.92 -0.42 0.75 16 38 H 0.14 0.86 6.63 -51.93 -0.34 0.52 16 39 H 0.08 1.01 6.62 -51.93 -0.34 0.67 16 40 H 0.04 0.51 8.08 -51.93 -0.42 0.09 16 LS Contribution 347.10 15.07 5.23 5.23 Total: -1.00 -32.40 347.10 -8.67 -41.07 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -4.58 Total: 0.90 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -2.88 Total: -26.87 kcal Atomic # 7 Polarization: -28.71 SS G_CDS: -0.33 Total: -29.04 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.64 Total: -9.57 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 0.12 Total: -5.42 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.17 Total: 16.66 kcal Atomic # 16 Polarization: 8.46 SS G_CDS: -1.42 Total: 7.05 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.40 -8.67 -41.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931332344.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.039 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds