Wall clock time and date at job start Wed Apr 1 2020 04:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86796 * 119.99882 * 2 1 4 4 H 1.48498 * 109.47234 * 275.38330 * 3 2 1 5 5 H 1.48496 * 109.47280 * 35.38510 * 3 2 1 6 6 H 1.48506 * 109.47136 * 155.38280 * 3 2 1 7 7 C 1.39945 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99910 * 342.25447 * 7 2 1 9 9 C 1.41398 * 119.99918 * 162.25531 * 7 2 1 10 10 C 1.40569 * 120.07827 * 329.45988 * 9 7 2 11 11 C 1.37598 * 119.53508 * 180.12102 * 10 9 7 12 12 C 1.38427 * 120.14774 * 0.05219 * 11 10 9 13 13 C 1.39146 * 120.91910 * 359.95924 * 12 11 10 14 14 C 1.37251 * 119.86301 * 359.85208 * 13 12 11 15 15 C 1.50677 * 121.80872 * 180.56918 * 14 13 12 16 16 C 1.52902 * 109.98321 * 343.06438 * 15 14 13 17 17 N 1.47172 * 108.45620 * 50.26724 * 16 15 14 18 18 C 1.46899 * 111.00117 * 165.51553 * 17 16 15 19 19 C 1.52998 * 109.47465 * 189.02084 * 18 17 16 20 20 S 1.81395 * 109.47561 * 179.97438 * 19 18 17 21 21 O 1.42097 * 109.47019 * 296.39469 * 20 19 18 22 22 C 1.81397 * 103.00047 * 179.97438 * 20 19 18 23 23 F 1.39895 * 109.47095 * 60.00287 * 22 20 19 24 24 F 1.39893 * 109.47466 * 300.00113 * 22 20 19 25 25 F 1.39902 * 109.46774 * 179.97438 * 22 20 19 26 26 C 1.46624 * 110.23939 * 288.92682 * 17 16 15 27 27 H 0.97000 * 120.00206 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.23199 * 0.10022 * 10 9 7 29 29 H 1.08002 * 119.92344 * 180.02562 * 11 10 9 30 30 H 1.08006 * 119.54200 * 179.97438 * 12 11 10 31 31 H 1.08998 * 109.38375 * 103.21712 * 15 14 13 32 32 H 1.08993 * 109.38913 * 223.01543 * 15 14 13 33 33 H 1.09000 * 109.64329 * 290.57876 * 16 15 14 34 34 H 1.09001 * 109.63902 * 169.95848 * 16 15 14 35 35 H 1.09002 * 109.47069 * 69.01752 * 18 17 16 36 36 H 1.08996 * 109.47019 * 309.02384 * 18 17 16 37 37 H 1.08999 * 109.46858 * 59.99432 * 19 18 17 38 38 H 1.08998 * 109.46764 * 300.00334 * 19 18 17 39 39 H 1.08998 * 109.26031 * 172.80612 * 26 17 16 40 40 H 1.08995 * 109.26069 * 292.30154 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3759 2.1121 -1.3939 5 1 1.5012 2.6171 0.8107 6 1 3.5920 1.4100 0.5832 7 6 2.0079 -1.2120 -0.0005 8 1 1.5064 -2.1251 0.2841 9 6 3.3714 -1.2410 -0.3738 10 6 3.8661 -0.3141 -1.3077 11 6 5.1944 -0.3539 -1.6647 12 6 6.0358 -1.3017 -1.1079 13 6 5.5594 -2.2252 -0.1825 14 6 4.2387 -2.2002 0.1902 15 6 3.6793 -3.1711 1.1975 16 6 4.6330 -4.3539 1.3689 17 7 5.9869 -3.8296 1.6099 18 6 6.8764 -4.8824 2.1180 19 6 8.1996 -4.2593 2.5672 20 16 9.2978 -5.5592 3.1954 21 8 8.7184 -6.1518 4.3496 22 6 10.7881 -4.6403 3.6699 23 9 10.4611 -3.6940 4.6470 24 9 11.3120 -3.9897 2.5477 25 9 11.7403 -5.5284 4.1816 26 6 6.5256 -3.2332 0.3835 27 1 -0.4850 0.8400 -0.0004 28 1 3.2081 0.4240 -1.7421 29 1 5.5811 0.3555 -2.3813 30 1 7.0766 -1.3244 -1.3954 31 1 3.5533 -2.6663 2.1553 32 1 2.7124 -3.5354 0.8506 33 1 4.6310 -4.9604 0.4632 34 1 4.3176 -4.9587 2.2191 35 1 7.0667 -5.6096 1.3287 36 1 6.4035 -5.3803 2.9644 37 1 8.0093 -3.5320 3.3565 38 1 8.6725 -3.7613 1.7207 39 1 7.4703 -2.7385 0.6092 40 1 6.6977 -4.0183 -0.3526 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931332344.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:38 Heat of formation + Delta-G solvation = -175.896015 kcal Electronic energy + Delta-G solvation = -27912.922446 eV Core-core repulsion = 23403.385433 eV Total energy + Delta-G solvation = -4509.537013 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.091 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.04467 -48.76646 -48.65864 -40.69791 -38.31477 -37.69913 -35.51966 -34.27355 -32.98223 -31.00508 -30.16098 -27.54387 -26.82522 -26.06981 -24.06163 -22.88500 -22.21098 -20.51134 -20.32171 -19.59515 -19.50821 -18.95508 -18.63953 -17.60268 -16.87388 -16.72478 -16.38780 -16.08058 -15.96322 -15.55495 -15.46185 -15.27605 -15.12703 -15.10029 -14.87703 -14.82708 -14.81237 -14.74464 -14.47763 -13.95757 -13.72053 -13.67345 -13.48406 -13.22193 -13.00609 -12.77627 -12.58977 -12.32088 -12.15912 -11.98229 -11.83638 -11.62604 -11.44994 -11.05603 -10.87543 -10.07776 -9.43229 -9.22540 -9.00381 -8.86102 -6.42707 -0.70317 0.67588 0.84163 0.88360 1.24311 1.38903 1.46600 1.84670 2.11980 2.36877 2.63456 2.89985 3.02133 3.08529 3.50473 3.66813 3.88210 4.01262 4.19807 4.37222 4.45418 4.48374 4.56957 4.60739 4.66399 4.78023 4.81626 4.87838 4.94182 5.04714 5.09943 5.22668 5.30344 5.37733 5.74628 5.89322 5.97589 6.04784 6.13794 6.17624 6.38054 6.51744 6.83041 6.92660 8.22215 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.020306 B = 0.002511 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.591000 B =11146.509848 C =11592.720386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.048 3.952 3 Si 0.962 3.038 4 H -0.262 1.262 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.477 4.477 8 H 0.063 0.937 9 C 0.067 3.933 10 C -0.260 4.260 11 C -0.092 4.092 12 C -0.218 4.218 13 C -0.058 4.058 14 C -0.170 4.170 15 C -0.050 4.050 16 C 0.064 3.936 17 N -0.546 5.546 18 C 0.067 3.933 19 C -0.450 4.450 20 S 1.396 4.604 21 O -0.814 6.814 22 C 0.110 3.890 23 F -0.213 7.213 24 F -0.161 7.161 25 F -0.181 7.181 26 C 0.099 3.901 27 H 0.290 0.710 28 H 0.088 0.912 29 H 0.121 0.879 30 H 0.135 0.865 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.164 0.836 39 H 0.106 0.894 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.469 -12.172 1.078 24.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.166 4.166 3 Si 0.787 3.213 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.507 4.507 8 H 0.081 0.919 9 C 0.064 3.936 10 C -0.280 4.280 11 C -0.110 4.110 12 C -0.238 4.238 13 C -0.059 4.059 14 C -0.172 4.172 15 C -0.087 4.087 16 C -0.063 4.063 17 N -0.271 5.271 18 C -0.062 4.062 19 C -0.590 4.590 20 S 1.577 4.423 21 O -0.810 6.810 22 C -0.025 4.025 23 F -0.195 7.195 24 F -0.143 7.143 25 F -0.162 7.162 26 C -0.027 4.027 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.139 0.861 30 H 0.153 0.847 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.182 0.818 39 H 0.124 0.876 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 21.185 -12.626 1.634 24.716 hybrid contribution -0.837 2.275 1.091 2.658 sum 20.348 -10.352 2.725 22.992 Atomic orbital electron populations 1.69726 1.08968 1.30984 1.38699 1.26698 0.95209 1.03861 0.90793 0.85535 0.79447 0.77309 0.79016 1.18802 1.21008 1.18274 1.19451 0.94265 0.95299 1.41709 0.91892 1.17902 0.92712 0.92367 0.90582 1.21099 0.97105 1.05097 1.04675 1.20893 0.92963 0.98312 0.98872 1.20798 0.99883 0.99465 1.03608 1.19624 0.93023 0.96892 0.96320 1.19738 0.93382 1.02036 1.02012 1.20104 0.97317 0.94665 0.96648 1.22111 0.88168 0.95249 1.00822 1.62171 1.02296 1.31829 1.30815 1.21799 0.90432 0.92812 1.01117 1.27788 1.07026 1.13355 1.10857 1.72648 0.85233 0.85527 0.98843 1.93094 1.73899 1.62311 1.51686 1.33224 1.05717 0.85620 0.77956 1.93184 1.92394 1.68573 1.65340 1.93186 1.88937 1.82330 1.49806 1.93154 1.68289 1.67270 1.87517 1.21057 0.96468 0.95544 0.89680 0.89996 0.89399 0.86055 0.84690 0.93375 0.92975 0.93408 0.89376 0.89457 0.90305 0.88108 0.81796 0.87647 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.88 13.93 21.83 0.30 -47.57 16 2 C 0.05 2.60 5.40 85.26 0.46 3.06 16 3 Si 0.96 44.55 24.52 68.60 1.68 46.23 16 4 H -0.26 -11.55 6.72 99.48 0.67 -10.88 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.26 -12.36 6.86 99.48 0.68 -11.68 16 7 C -0.48 -26.57 8.84 23.46 0.21 -26.37 16 8 H 0.06 3.73 6.68 -2.91 -0.02 3.71 16 9 C 0.07 3.36 5.10 -21.24 -0.11 3.25 16 10 C -0.26 -12.35 7.16 22.69 0.16 -12.18 16 11 C -0.09 -3.65 10.02 22.16 0.22 -3.43 16 12 C -0.22 -7.59 9.65 22.53 0.22 -7.37 16 13 C -0.06 -2.08 5.79 -19.89 -0.12 -2.20 16 14 C -0.17 -7.40 5.83 -19.41 -0.11 -7.52 16 15 C -0.05 -1.94 5.27 29.81 0.16 -1.78 16 16 C 0.06 1.78 5.58 86.22 0.48 2.26 16 17 N -0.55 -13.34 4.69 -901.10 -4.22 -17.56 16 18 C 0.07 1.01 4.95 86.30 0.43 1.44 16 19 C -0.45 -5.28 5.81 71.98 0.42 -4.86 16 20 S 1.40 13.24 13.19 -56.49 -0.75 12.50 16 21 O -0.81 -17.10 18.14 -148.98 -2.70 -19.80 16 22 C 0.11 1.72 3.50 113.37 0.40 2.11 16 23 F -0.21 -4.76 17.34 44.97 0.78 -3.98 16 24 F -0.16 -2.16 17.34 44.97 0.78 -1.38 16 25 F -0.18 -3.23 17.36 44.97 0.78 -2.45 16 26 C 0.10 2.39 4.89 85.60 0.42 2.81 16 27 H 0.29 14.70 8.30 -92.71 -0.77 13.93 16 28 H 0.09 4.27 4.78 -2.91 -0.01 4.25 16 29 H 0.12 4.03 8.06 -2.91 -0.02 4.01 16 30 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 31 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.05 2.18 6.75 -2.39 -0.02 2.17 16 33 H 0.05 1.22 8.05 -2.39 -0.02 1.20 16 34 H 0.09 2.10 7.87 -2.39 -0.02 2.08 16 35 H 0.09 0.67 8.07 -2.39 -0.02 0.65 16 36 H 0.08 1.28 7.91 -2.39 -0.02 1.26 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.16 1.06 6.63 -2.39 -0.02 1.04 16 39 H 0.11 2.01 6.62 -2.39 -0.02 2.00 16 40 H 0.07 1.33 8.08 -2.39 -0.02 1.31 16 Total: -1.00 -75.19 347.10 0.91 -74.27 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 1.03 Total: 10.51 kcal Atomic # 6 Polarization: -54.00 SS G_CDS: 3.23 Total: -50.77 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: -3.92 Total: -65.13 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -2.70 Total: -19.80 kcal Atomic # 9 Polarization: -10.15 SS G_CDS: 2.34 Total: -7.81 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.68 Total: 46.23 kcal Atomic # 16 Polarization: 13.24 SS G_CDS: -0.75 Total: 12.50 kcal Total: -75.19 0.91 -74.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931332344.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.623 kcal (2) G-P(sol) polarization free energy of solvation -75.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds