Wall clock time and date at job start Wed Apr 1 2020 04:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86797 * 120.00119 * 2 1 4 4 H 1.48501 * 109.47405 * 274.50339 * 3 2 1 5 5 H 1.48507 * 109.46704 * 34.50450 * 3 2 1 6 6 H 1.48498 * 109.47109 * 154.49877 * 3 2 1 7 7 C 1.39950 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00208 * 162.95563 * 7 2 1 9 9 C 1.41397 * 119.99910 * 343.23400 * 7 2 1 10 10 C 1.40573 * 120.07892 * 333.54184 * 9 7 2 11 11 C 1.37596 * 119.54203 * 179.84488 * 10 9 7 12 12 C 1.38431 * 120.13947 * 0.61404 * 11 10 9 13 13 C 1.39146 * 120.92059 * 359.67218 * 12 11 10 14 14 C 1.37249 * 119.86411 * 359.84099 * 13 12 11 15 15 C 1.50681 * 121.80481 * 180.60652 * 14 13 12 16 16 C 1.52886 * 109.99012 * 343.04727 * 15 14 13 17 17 N 1.47170 * 108.47230 * 50.24230 * 16 15 14 18 18 C 1.46901 * 111.00143 * 165.53396 * 17 16 15 19 19 C 1.52997 * 109.47558 * 56.92490 * 18 17 16 20 20 S 1.81395 * 109.47302 * 179.97438 * 19 18 17 21 21 O 1.42100 * 109.46682 * 63.61647 * 20 19 18 22 22 C 1.81402 * 102.99897 * 179.97438 * 20 19 18 23 23 F 1.39904 * 109.46886 * 60.00375 * 22 20 19 24 24 F 1.39904 * 109.47080 * 179.97438 * 22 20 19 25 25 F 1.39899 * 109.47275 * 300.00436 * 22 20 19 26 26 C 1.46616 * 110.23614 * 288.94350 * 17 16 15 27 27 H 0.97003 * 119.99962 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.22837 * 0.12686 * 10 9 7 29 29 H 1.08000 * 119.93353 * 180.32654 * 11 10 9 30 30 H 1.08002 * 119.54211 * 179.64769 * 12 11 10 31 31 H 1.09006 * 109.38388 * 103.20306 * 15 14 13 32 32 H 1.08998 * 109.38636 * 222.88131 * 15 14 13 33 33 H 1.09006 * 109.63732 * 290.54738 * 16 15 14 34 34 H 1.09004 * 109.63848 * 169.93822 * 16 15 14 35 35 H 1.09001 * 109.47001 * 176.92807 * 18 17 16 36 36 H 1.09001 * 109.46807 * 296.92135 * 18 17 16 37 37 H 1.09008 * 109.46881 * 300.00348 * 19 18 17 38 38 H 1.08998 * 109.46699 * 59.99657 * 19 18 17 39 39 H 1.09001 * 109.26801 * 292.29959 * 26 17 16 40 40 H 1.09000 * 109.23496 * 172.81610 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3946 2.1014 -1.3957 5 1 1.4905 2.6232 0.7932 6 1 3.5841 1.4145 0.6028 7 6 2.0080 -1.2120 -0.0005 8 1 3.0524 -1.2324 -0.2747 9 6 1.3461 -2.4107 0.3522 10 6 0.2286 -2.3740 1.2042 11 6 -0.4091 -3.5468 1.5377 12 6 0.0559 -4.7547 1.0467 13 6 1.1645 -4.8062 0.2074 14 6 1.8090 -3.6469 -0.1455 15 6 3.0049 -3.6506 -1.0621 16 6 3.5904 -5.0601 -1.1517 17 7 2.4992 -5.9999 -1.4546 18 6 3.0290 -7.2994 -1.8890 19 6 3.9558 -7.8595 -0.8082 20 16 4.6093 -9.4644 -1.3443 21 8 5.4066 -9.2867 -2.5070 22 6 5.6675 -9.9584 0.0439 23 9 4.8964 -10.0533 1.2073 24 9 6.2492 -11.2005 -0.2321 25 9 6.6726 -9.0026 0.2273 26 6 1.6232 -6.1527 -0.2889 27 1 -0.4850 0.8401 0.0004 28 1 -0.1297 -1.4313 1.5907 29 1 -1.2714 -3.5254 2.1875 30 1 -0.4486 -5.6699 1.3192 31 1 2.7003 -3.3216 -2.0557 32 1 3.7611 -2.9687 -0.6731 33 1 4.0501 -5.3270 -0.2000 34 1 4.3366 -5.0970 -1.9454 35 1 2.2033 -7.9916 -2.0539 36 1 3.5874 -7.1725 -2.8164 37 1 4.7815 -7.1672 -0.6433 38 1 3.3974 -7.9863 0.1192 39 1 2.1679 -6.6624 0.5059 40 1 0.7541 -6.7482 -0.5684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931332346.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:43 Heat of formation + Delta-G solvation = -154.006838 kcal Electronic energy + Delta-G solvation = -28058.354213 eV Core-core repulsion = 23549.766386 eV Total energy + Delta-G solvation = -4508.587827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.091 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -50.27559 -47.95102 -47.92521 -39.26829 -36.94966 -36.83235 -33.77274 -32.69407 -31.05015 -29.14840 -28.52540 -26.79883 -25.20529 -24.74678 -23.06039 -21.47431 -20.54383 -19.81608 -18.85044 -18.79785 -18.31733 -18.00384 -17.04604 -16.05770 -15.79690 -15.54138 -14.99734 -14.91566 -14.77796 -14.57644 -14.34792 -14.26660 -14.24588 -14.05568 -14.03964 -13.97608 -13.31575 -13.28804 -13.17262 -12.69955 -12.45479 -11.99203 -11.84998 -11.55820 -11.39215 -11.31264 -11.13515 -11.02009 -10.83020 -10.55777 -10.49713 -10.21528 -9.48725 -9.41508 -9.27146 -9.13351 -8.21390 -7.32821 -7.20834 -6.75821 -4.36070 -0.06224 1.27513 2.50596 2.76073 2.91539 3.05971 3.09612 3.09821 3.19104 3.66798 3.78124 3.91918 4.06427 4.41983 4.50777 4.60492 5.11336 5.19270 5.37256 5.49111 5.58136 5.69391 5.82430 5.94425 5.97340 6.06635 6.31158 6.37306 6.57772 6.75542 6.89203 7.06719 7.07615 7.19123 7.33048 7.41525 7.62277 7.88843 8.02087 8.06582 8.27084 8.61620 8.87784 8.95851 10.18822 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.019411 B = 0.002514 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.112520 B =11134.366115 C =11628.318995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.077 3.923 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.463 4.463 8 H 0.079 0.921 9 C 0.113 3.887 10 C -0.165 4.165 11 C -0.105 4.105 12 C -0.236 4.236 13 C -0.063 4.063 14 C -0.172 4.172 15 C -0.047 4.047 16 C 0.050 3.950 17 N -0.512 5.512 18 C 0.074 3.926 19 C -0.488 4.488 20 S 1.304 4.696 21 O -0.765 6.765 22 C 0.116 3.884 23 F -0.168 7.168 24 F -0.175 7.175 25 F -0.195 7.195 26 C 0.099 3.901 27 H 0.279 0.721 28 H 0.115 0.885 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.035 0.965 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.112 0.888 38 H 0.140 0.860 39 H 0.037 0.963 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.625 -17.320 -1.234 17.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.492 4.492 8 H 0.097 0.903 9 C 0.111 3.889 10 C -0.184 4.184 11 C -0.124 4.124 12 C -0.256 4.256 13 C -0.064 4.064 14 C -0.173 4.173 15 C -0.084 4.084 16 C -0.077 4.077 17 N -0.234 5.234 18 C -0.057 4.057 19 C -0.629 4.629 20 S 1.487 4.513 21 O -0.760 6.760 22 C -0.021 4.021 23 F -0.150 7.150 24 F -0.156 7.156 25 F -0.177 7.177 26 C -0.028 4.028 27 H 0.090 0.910 28 H 0.133 0.867 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.130 0.870 38 H 0.158 0.842 39 H 0.055 0.945 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.114 -17.513 -2.366 18.145 hybrid contribution 2.483 1.826 1.422 3.394 sum 6.597 -15.687 -0.944 17.044 Atomic orbital electron populations 1.69828 1.07533 1.29080 1.35526 1.25871 0.94683 1.01153 0.92336 0.86375 0.80756 0.81001 0.79044 1.19602 1.20109 1.18506 1.19563 0.97686 0.91004 1.40956 0.90305 1.17511 0.91269 0.91445 0.88722 1.21238 0.99548 0.96674 1.00989 1.20574 0.98577 0.93353 0.99857 1.20166 1.01145 0.96306 1.07934 1.18868 0.96585 0.92285 0.98646 1.19284 1.01095 0.92845 1.04109 1.20112 0.96020 0.93065 0.99239 1.22295 0.92393 0.94214 0.98812 1.62560 1.18296 1.07133 1.35453 1.22047 0.96220 0.92153 0.95281 1.28439 1.09077 1.14802 1.10628 1.72999 0.97177 1.01587 0.79551 1.93198 1.64844 1.85112 1.32890 1.32819 0.89267 0.79169 1.00804 1.93175 1.73819 1.95956 1.52041 1.93163 1.85742 1.43199 1.93531 1.93210 1.64591 1.63203 1.96647 1.20957 0.95555 0.96456 0.89823 0.90969 0.86689 0.89493 0.89611 0.91693 0.91613 0.94652 0.91551 0.89180 0.89803 0.86954 0.84238 0.94477 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.26 11.02 55.55 0.61 -19.65 16 2 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 3 Si 0.90 18.40 29.59 -169.99 -5.03 13.37 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.46 -11.81 8.39 -37.74 -0.32 -12.12 16 8 H 0.08 1.93 6.40 -52.49 -0.34 1.59 16 9 C 0.11 2.89 5.56 -106.74 -0.59 2.30 16 10 C -0.17 -4.20 8.68 -38.94 -0.34 -4.53 16 11 C -0.11 -2.40 10.02 -39.74 -0.40 -2.80 16 12 C -0.24 -4.98 9.65 -39.17 -0.38 -5.36 16 13 C -0.06 -1.32 5.79 -104.66 -0.61 -1.92 16 14 C -0.17 -3.93 5.83 -103.91 -0.61 -4.54 16 15 C -0.05 -0.93 5.25 -27.95 -0.15 -1.08 16 16 C 0.05 0.80 4.58 -3.73 -0.02 0.78 16 17 N -0.51 -7.53 4.90 -236.18 -1.16 -8.69 16 18 C 0.07 0.74 5.33 -3.83 -0.02 0.72 16 19 C -0.49 -4.14 5.20 37.16 0.19 -3.94 16 20 S 1.30 9.06 13.19 -107.50 -1.42 7.64 16 21 O -0.77 -9.21 18.14 -35.23 -0.64 -9.85 16 22 C 0.12 1.13 3.50 101.05 0.35 1.48 16 23 F -0.17 -1.55 17.34 2.25 0.04 -1.51 16 24 F -0.17 -1.84 17.36 2.25 0.04 -1.80 16 25 F -0.19 -2.46 17.34 2.25 0.04 -2.42 16 26 C 0.10 1.54 5.06 -5.15 -0.03 1.52 16 27 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 28 H 0.12 3.04 6.25 -52.49 -0.33 2.71 16 29 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 30 H 0.09 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.07 1.30 6.72 -51.93 -0.35 0.95 16 33 H 0.04 0.55 7.07 -51.93 -0.37 0.18 16 34 H 0.07 0.94 8.03 -51.93 -0.42 0.53 16 35 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.11 1.14 6.70 -51.92 -0.35 0.79 16 38 H 0.14 0.99 6.46 -51.92 -0.34 0.66 16 39 H 0.04 0.52 6.26 -51.93 -0.33 0.19 16 40 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 LS Contribution 349.01 15.07 5.26 5.26 Total: -1.00 -32.18 349.01 -9.72 -41.90 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -4.47 Total: 3.43 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: -2.99 Total: -27.68 kcal Atomic # 7 Polarization: -27.80 SS G_CDS: -0.55 Total: -28.34 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -0.64 Total: -9.85 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.12 Total: -5.73 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Atomic # 16 Polarization: 9.06 SS G_CDS: -1.42 Total: 7.64 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.18 -9.72 -41.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931332346.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.110 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds