Wall clock time and date at job start Wed Apr 1 2020 04:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86797 * 120.00119 * 2 1 4 4 H 1.48501 * 109.47405 * 274.50339 * 3 2 1 5 5 H 1.48507 * 109.46704 * 34.50450 * 3 2 1 6 6 H 1.48498 * 109.47109 * 154.49877 * 3 2 1 7 7 C 1.39950 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00208 * 162.95563 * 7 2 1 9 9 C 1.41397 * 119.99910 * 343.23400 * 7 2 1 10 10 C 1.40573 * 120.07892 * 333.54184 * 9 7 2 11 11 C 1.37596 * 119.54203 * 179.84488 * 10 9 7 12 12 C 1.38431 * 120.13947 * 0.61404 * 11 10 9 13 13 C 1.39146 * 120.92059 * 359.67218 * 12 11 10 14 14 C 1.37249 * 119.86411 * 359.84099 * 13 12 11 15 15 C 1.50681 * 121.80481 * 180.60652 * 14 13 12 16 16 C 1.52886 * 109.99012 * 343.04727 * 15 14 13 17 17 N 1.47170 * 108.47230 * 50.24230 * 16 15 14 18 18 C 1.46901 * 111.00143 * 165.53396 * 17 16 15 19 19 C 1.52997 * 109.47558 * 56.92490 * 18 17 16 20 20 S 1.81395 * 109.47302 * 179.97438 * 19 18 17 21 21 O 1.42100 * 109.46682 * 63.61647 * 20 19 18 22 22 C 1.81402 * 102.99897 * 179.97438 * 20 19 18 23 23 F 1.39904 * 109.46886 * 60.00375 * 22 20 19 24 24 F 1.39904 * 109.47080 * 179.97438 * 22 20 19 25 25 F 1.39899 * 109.47275 * 300.00436 * 22 20 19 26 26 C 1.46616 * 110.23614 * 288.94350 * 17 16 15 27 27 H 0.97003 * 119.99962 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.22837 * 0.12686 * 10 9 7 29 29 H 1.08000 * 119.93353 * 180.32654 * 11 10 9 30 30 H 1.08002 * 119.54211 * 179.64769 * 12 11 10 31 31 H 1.09006 * 109.38388 * 103.20306 * 15 14 13 32 32 H 1.08998 * 109.38636 * 222.88131 * 15 14 13 33 33 H 1.09006 * 109.63732 * 290.54738 * 16 15 14 34 34 H 1.09004 * 109.63848 * 169.93822 * 16 15 14 35 35 H 1.09001 * 109.47001 * 176.92807 * 18 17 16 36 36 H 1.09001 * 109.46807 * 296.92135 * 18 17 16 37 37 H 1.09008 * 109.46881 * 300.00348 * 19 18 17 38 38 H 1.08998 * 109.46699 * 59.99657 * 19 18 17 39 39 H 1.09001 * 109.26801 * 292.29959 * 26 17 16 40 40 H 1.09000 * 109.23496 * 172.81610 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3946 2.1014 -1.3957 5 1 1.4905 2.6232 0.7932 6 1 3.5841 1.4145 0.6028 7 6 2.0080 -1.2120 -0.0005 8 1 3.0524 -1.2324 -0.2747 9 6 1.3461 -2.4107 0.3522 10 6 0.2286 -2.3740 1.2042 11 6 -0.4091 -3.5468 1.5377 12 6 0.0559 -4.7547 1.0467 13 6 1.1645 -4.8062 0.2074 14 6 1.8090 -3.6469 -0.1455 15 6 3.0049 -3.6506 -1.0621 16 6 3.5904 -5.0601 -1.1517 17 7 2.4992 -5.9999 -1.4546 18 6 3.0290 -7.2994 -1.8890 19 6 3.9558 -7.8595 -0.8082 20 16 4.6093 -9.4644 -1.3443 21 8 5.4066 -9.2867 -2.5070 22 6 5.6675 -9.9584 0.0439 23 9 4.8964 -10.0533 1.2073 24 9 6.2492 -11.2005 -0.2321 25 9 6.6726 -9.0026 0.2273 26 6 1.6232 -6.1527 -0.2889 27 1 -0.4850 0.8401 0.0004 28 1 -0.1297 -1.4313 1.5907 29 1 -1.2714 -3.5254 2.1875 30 1 -0.4486 -5.6699 1.3192 31 1 2.7003 -3.3216 -2.0557 32 1 3.7611 -2.9687 -0.6731 33 1 4.0501 -5.3270 -0.2000 34 1 4.3366 -5.0970 -1.9454 35 1 2.2033 -7.9916 -2.0539 36 1 3.5874 -7.1725 -2.8164 37 1 4.7815 -7.1672 -0.6433 38 1 3.3974 -7.9863 0.1192 39 1 2.1679 -6.6624 0.5059 40 1 0.7541 -6.7482 -0.5684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931332346.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:42 Heat of formation + Delta-G solvation = -175.388200 kcal Electronic energy + Delta-G solvation = -28059.281378 eV Core-core repulsion = 23549.766386 eV Total energy + Delta-G solvation = -4509.514993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.091 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.07573 -48.80109 -48.68984 -40.65604 -38.34958 -37.70515 -35.53450 -34.06513 -32.53603 -30.53967 -29.94945 -27.56973 -26.99960 -25.91129 -24.43243 -22.68668 -22.28863 -20.60571 -19.88140 -19.61904 -19.47356 -18.90097 -18.61098 -17.37122 -16.81846 -16.78120 -16.37136 -15.99035 -15.76006 -15.55057 -15.44101 -15.33733 -15.16039 -14.98745 -14.92542 -14.85786 -14.84459 -14.68928 -14.28376 -14.04682 -13.56991 -13.39059 -13.23173 -13.10594 -12.95340 -12.76014 -12.50415 -12.25991 -12.23308 -11.98130 -11.80384 -11.76184 -11.14018 -11.01219 -10.89469 -10.13304 -9.35924 -9.12406 -8.88755 -8.57892 -6.27048 -0.70543 0.64875 1.02790 1.15331 1.36274 1.47597 1.53024 1.83939 2.20524 2.33818 2.77081 2.86796 3.01896 3.04769 3.68031 3.72473 3.83313 4.06463 4.15604 4.39087 4.45940 4.53093 4.60661 4.67463 4.73671 4.80567 4.87754 5.00950 5.03723 5.14941 5.24642 5.32158 5.38421 5.57275 5.82715 6.01331 6.06986 6.19970 6.23816 6.28243 6.51462 6.78360 7.01597 7.13517 8.38456 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.019411 B = 0.002514 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.112520 B =11134.366115 C =11628.318995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.035 3.965 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.260 1.260 7 C -0.496 4.496 8 H 0.076 0.924 9 C 0.077 3.923 10 C -0.199 4.199 11 C -0.116 4.116 12 C -0.230 4.230 13 C -0.068 4.068 14 C -0.189 4.189 15 C -0.045 4.045 16 C 0.060 3.940 17 N -0.529 5.529 18 C 0.070 3.930 19 C -0.497 4.497 20 S 1.399 4.601 21 O -0.813 6.813 22 C 0.107 3.893 23 F -0.163 7.163 24 F -0.180 7.180 25 F -0.213 7.213 26 C 0.101 3.899 27 H 0.284 0.716 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.124 0.876 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.040 0.960 34 H 0.081 0.919 35 H 0.130 0.870 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.161 0.839 39 H 0.064 0.936 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.732 -20.092 -1.432 20.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.179 4.179 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.526 4.526 8 H 0.094 0.906 9 C 0.075 3.925 10 C -0.219 4.219 11 C -0.134 4.134 12 C -0.250 4.250 13 C -0.069 4.069 14 C -0.191 4.191 15 C -0.082 4.082 16 C -0.068 4.068 17 N -0.252 5.252 18 C -0.060 4.060 19 C -0.638 4.638 20 S 1.580 4.420 21 O -0.808 6.808 22 C -0.028 4.028 23 F -0.144 7.144 24 F -0.162 7.162 25 F -0.196 7.196 26 C -0.026 4.026 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.123 0.877 30 H 0.142 0.858 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.148 0.852 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.179 0.821 39 H 0.082 0.918 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.230 -20.312 -2.555 20.904 hybrid contribution 2.395 2.508 1.508 3.782 sum 6.625 -17.803 -1.047 19.025 Atomic orbital electron populations 1.69900 1.08911 1.30065 1.36901 1.26670 0.95403 1.04250 0.91600 0.85326 0.79260 0.76703 0.79227 1.18918 1.19330 1.18367 1.19781 0.97818 0.92224 1.42733 0.90607 1.17928 0.92018 0.92956 0.89568 1.21194 1.00999 0.96891 1.02793 1.20877 0.99006 0.93385 1.00130 1.20645 1.00881 0.96889 1.06560 1.19506 0.95643 0.94324 0.97388 1.19732 1.02100 0.92873 1.04365 1.20051 0.94904 0.95920 0.97366 1.22122 0.92861 0.92089 0.99700 1.62449 1.18198 1.09448 1.35132 1.22182 0.97904 0.90693 0.95224 1.28485 1.08748 1.15434 1.11171 1.72654 0.93900 0.98977 0.76428 1.93088 1.66083 1.85550 1.36110 1.33342 0.89049 0.78677 1.01707 1.93186 1.73423 1.95876 1.51960 1.93153 1.85933 1.43528 1.93585 1.93178 1.65588 1.64007 1.96780 1.21013 0.97140 0.93382 0.91032 0.90552 0.89078 0.87671 0.85799 0.93452 0.92867 0.94228 0.90053 0.85226 0.90039 0.88447 0.82146 0.91809 0.87581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.62 11.02 21.83 0.24 -44.38 16 2 C 0.03 1.78 5.14 85.26 0.44 2.21 16 3 Si 0.97 39.20 29.59 68.60 2.03 41.23 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 6 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 7 C -0.50 -26.74 8.39 23.46 0.20 -26.54 16 8 H 0.08 3.95 6.40 -2.91 -0.02 3.93 16 9 C 0.08 4.15 5.56 -21.24 -0.12 4.03 16 10 C -0.20 -10.59 8.68 22.69 0.20 -10.40 16 11 C -0.12 -5.28 10.02 22.16 0.22 -5.06 16 12 C -0.23 -9.22 9.65 22.53 0.22 -9.00 16 13 C -0.07 -2.70 5.79 -19.89 -0.12 -2.82 16 14 C -0.19 -8.77 5.83 -19.41 -0.11 -8.88 16 15 C -0.04 -1.81 5.25 29.80 0.16 -1.66 16 16 C 0.06 1.81 4.58 86.21 0.39 2.21 16 17 N -0.53 -13.84 4.90 -901.12 -4.41 -18.25 16 18 C 0.07 1.10 5.33 86.30 0.46 1.56 16 19 C -0.50 -6.45 5.20 71.98 0.37 -6.07 16 20 S 1.40 14.69 13.19 -56.49 -0.75 13.94 16 21 O -0.81 -17.50 18.14 -148.98 -2.70 -20.20 16 22 C 0.11 1.81 3.50 113.37 0.40 2.21 16 23 F -0.16 -2.49 17.34 44.97 0.78 -1.71 16 24 F -0.18 -3.42 17.36 44.97 0.78 -2.64 16 25 F -0.21 -5.02 17.34 44.97 0.78 -4.24 16 26 C 0.10 2.72 5.06 85.60 0.43 3.15 16 27 H 0.28 13.88 8.30 -92.71 -0.77 13.11 16 28 H 0.09 5.15 6.25 -2.91 -0.02 5.13 16 29 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 30 H 0.12 3.98 8.06 -2.91 -0.02 3.96 16 31 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.05 2.21 6.72 -2.39 -0.02 2.19 16 33 H 0.04 1.15 7.07 -2.38 -0.02 1.14 16 34 H 0.08 2.18 8.03 -2.38 -0.02 2.16 16 35 H 0.13 1.05 8.12 -2.39 -0.02 1.03 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.10 1.68 6.70 -2.39 -0.02 1.66 16 38 H 0.16 1.44 6.46 -2.39 -0.02 1.42 16 39 H 0.06 1.42 6.26 -2.39 -0.01 1.40 16 40 H 0.11 2.32 8.13 -2.39 -0.02 2.30 16 Total: -1.00 -74.04 349.01 0.98 -73.06 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 1.09 Total: 18.25 kcal Atomic # 6 Polarization: -58.20 SS G_CDS: 3.14 Total: -55.06 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -4.17 Total: -62.64 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -2.70 Total: -20.20 kcal Atomic # 9 Polarization: -10.93 SS G_CDS: 2.34 Total: -8.59 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Atomic # 16 Polarization: 14.69 SS G_CDS: -0.75 Total: 13.94 kcal Total: -74.04 0.98 -73.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931332346.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.329 kcal (2) G-P(sol) polarization free energy of solvation -74.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds