Wall clock time and date at job start Wed Apr 1 2020 04:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00176 * 2 1 4 4 H 1.48504 * 109.46981 * 240.00034 * 3 2 1 5 5 H 1.48505 * 109.47125 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47097 * 119.99833 * 3 2 1 7 7 C 1.38815 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00442 * 197.36449 * 7 2 1 9 9 N 1.36944 * 119.99762 * 17.37034 * 7 2 1 10 10 C 1.46928 * 120.62994 * 27.66014 * 9 7 2 11 11 C 1.53198 * 108.77453 * 126.41282 * 10 9 7 12 12 C 1.53039 * 109.30870 * 54.63305 * 11 10 9 13 13 F 1.39903 * 109.45682 * 178.61533 * 12 11 10 14 14 F 1.39897 * 109.45994 * 58.65884 * 12 11 10 15 15 C 1.53038 * 109.53951 * 298.63326 * 12 11 10 16 16 H 1.09002 * 109.52666 * 301.39696 * 15 12 11 17 17 C 1.53000 * 109.49611 * 181.31674 * 15 12 11 18 18 N 1.46503 * 109.47129 * 175.15975 * 17 15 12 19 19 C 1.34781 * 120.00047 * 179.97438 * 18 17 15 20 20 O 1.21710 * 119.99893 * 0.02562 * 19 18 17 21 21 C 1.46549 * 120.00063 * 180.02562 * 19 18 17 22 22 C 1.37929 * 126.23348 * 180.02562 * 21 19 18 23 23 C 1.39744 * 107.12148 * 179.97438 * 22 21 19 24 24 C 1.35663 * 107.88936 * 359.97438 * 23 22 21 25 25 Cl 1.73599 * 125.57644 * 180.02562 * 24 23 22 26 26 N 1.35576 * 108.84538 * 0.26829 * 24 23 22 27 27 H 0.96999 * 125.69501 * 179.72075 * 26 24 23 28 28 C 1.46926 * 120.63027 * 207.68240 * 9 7 2 29 29 H 0.97002 * 119.99842 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.58799 * 246.20048 * 10 9 7 31 31 H 1.09002 * 109.58533 * 6.62973 * 10 9 7 32 32 H 1.08995 * 109.49742 * 174.58399 * 11 10 9 33 33 H 1.08999 * 109.49418 * 294.68463 * 11 10 9 34 34 H 1.09009 * 109.47069 * 55.16393 * 17 15 12 35 35 H 1.08997 * 109.47492 * 295.16528 * 17 15 12 36 36 H 0.96995 * 119.99839 * 0.02562 * 18 17 15 37 37 H 1.07998 * 126.43739 * 359.97438 * 22 21 19 38 38 H 1.07999 * 126.05699 * 179.97438 * 23 22 21 39 39 H 1.08993 * 109.58631 * 113.79598 * 28 9 7 40 40 H 1.09007 * 109.58340 * 353.37581 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2235 0.2797 9 7 1.3723 -2.3612 -0.3530 10 6 0.2277 -2.3348 -1.2739 11 6 0.5005 -3.3052 -2.4275 12 6 0.8183 -4.6902 -1.8593 13 9 1.0370 -5.5864 -2.9111 14 9 -0.2586 -5.1347 -1.0849 15 6 2.0741 -4.6102 -0.9882 16 1 2.9083 -4.2408 -1.5847 17 6 2.4098 -6.0015 -0.4473 18 7 3.6743 -5.9466 0.2904 19 6 4.1712 -7.0625 0.8601 20 8 3.5695 -8.1158 0.7613 21 6 5.4358 -7.0074 1.5986 22 6 6.0588 -8.0647 2.2283 23 6 7.2317 -7.5678 2.8031 24 6 7.3053 -6.2429 2.5209 25 17 8.5809 -5.1743 3.0153 26 7 6.2170 -5.8889 1.7941 27 1 6.0217 -4.9976 1.4649 28 6 1.8191 -3.6547 0.1817 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6745 -2.6411 -0.7444 31 1 0.0985 -1.3265 -1.6674 32 1 -0.3803 -3.3675 -3.0665 33 1 1.3491 -2.9476 -3.0106 34 1 2.5038 -6.7013 -1.2778 35 1 1.6142 -6.3338 0.2195 36 1 4.1536 -5.1070 0.3695 37 1 5.7065 -9.0847 2.2694 38 1 7.9520 -8.1376 3.3714 39 1 1.0468 -4.0686 0.8299 40 1 2.7399 -3.5173 0.7486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046969218.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:32 Heat of formation + Delta-G solvation = -79.515400 kcal Electronic energy + Delta-G solvation = -28543.851755 eV Core-core repulsion = 24056.370375 eV Total energy + Delta-G solvation = -4487.481381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.095 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.59785 -46.54731 -41.63345 -39.33647 -37.44213 -37.03476 -35.17014 -32.86826 -31.67826 -31.00769 -30.34026 -29.26455 -25.90005 -25.24432 -23.14157 -22.32081 -21.57154 -20.90617 -20.50608 -19.77733 -19.22242 -17.23877 -16.87754 -16.59143 -16.21943 -15.78523 -15.54361 -15.34528 -15.11484 -14.68559 -14.35042 -14.12842 -14.04829 -13.64726 -13.35439 -13.31295 -13.19424 -12.97628 -12.92843 -12.85905 -12.28913 -12.06233 -11.77715 -11.69964 -11.63470 -11.61144 -11.31190 -10.89149 -10.72338 -10.63253 -10.33397 -10.15040 -10.01914 -9.75617 -9.48143 -9.25178 -8.68824 -8.47980 -6.99007 -6.01607 -3.46644 1.05281 1.27953 2.24196 2.84438 2.93714 3.17538 3.24283 3.31177 3.32118 4.12142 4.28953 4.49689 4.56433 4.62735 4.80566 4.85997 4.93640 5.11855 5.19315 5.32586 5.43842 5.52516 5.54630 5.74713 5.81073 5.89497 6.06177 6.12652 6.16524 6.20487 6.23584 6.33874 6.40962 6.58651 6.75221 7.02785 7.29240 7.37708 7.55844 7.97996 8.18277 8.94297 9.56906 10.11978 11.07407 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.009040 B = 0.003498 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3096.730995 B = 8002.265726 C =10679.153562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.009 3.991 3 Si 0.905 3.095 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.266 4.266 8 H 0.068 0.932 9 N -0.590 5.590 10 C 0.170 3.830 11 C -0.179 4.179 12 C 0.301 3.699 13 F -0.213 7.213 14 F -0.198 7.198 15 C -0.157 4.157 16 H 0.102 0.898 17 C 0.126 3.874 18 N -0.722 5.722 19 C 0.589 3.411 20 O -0.524 6.524 21 C -0.031 4.031 22 C -0.099 4.099 23 C -0.178 4.178 24 C 0.088 3.912 25 Cl -0.014 7.014 26 N -0.531 5.531 27 H 0.422 0.578 28 C 0.153 3.847 29 H 0.258 0.742 30 H 0.033 0.967 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.397 0.603 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.034 0.966 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.186 -10.768 1.388 16.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.191 4.191 3 Si 0.734 3.266 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.395 4.395 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.044 3.956 11 C -0.219 4.219 12 C 0.264 3.736 13 F -0.194 7.194 14 F -0.179 7.179 15 C -0.178 4.178 16 H 0.120 0.880 17 C 0.002 3.998 18 N -0.373 5.373 19 C 0.376 3.624 20 O -0.400 6.400 21 C -0.144 4.144 22 C -0.126 4.126 23 C -0.204 4.204 24 C -0.055 4.055 25 Cl 0.014 6.986 26 N -0.131 5.131 27 H 0.261 0.739 28 C 0.026 3.974 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.232 0.768 37 H 0.176 0.824 38 H 0.172 0.828 39 H 0.052 0.948 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.615 -11.142 1.289 16.146 hybrid contribution 0.630 1.823 -0.148 1.934 sum 12.244 -9.319 1.141 15.430 Atomic orbital electron populations 1.70005 1.05342 1.26147 1.52522 1.25074 0.95299 0.98624 1.00070 0.86341 0.78972 0.83048 0.78202 1.20852 1.21437 1.20757 1.19076 0.92730 0.84517 1.43166 0.91451 1.44082 1.35770 1.01258 1.50033 1.20856 0.89319 0.98302 0.87151 1.23274 1.03414 0.92844 1.02342 1.20997 0.84782 0.87665 0.80107 1.92963 1.95145 1.71648 1.59618 1.92972 1.58162 1.90890 1.75901 1.22991 0.97285 0.96783 1.00759 0.88013 1.21390 0.85283 0.96679 0.96456 1.45846 1.25044 1.11107 1.55276 1.16897 0.82948 0.84088 0.78469 1.90873 1.59359 1.29430 1.60317 1.20518 0.96181 0.87151 1.10564 1.21302 0.94264 0.98666 0.98325 1.20684 1.00912 0.91321 1.07490 1.21056 0.88629 0.92204 1.03630 1.98417 1.45792 1.65021 1.89369 1.42065 1.17519 1.11125 1.42393 0.73892 1.20901 0.98813 0.86483 0.91226 0.93168 0.94888 0.88070 0.90440 0.89572 0.90586 0.90218 0.76836 0.82383 0.82758 0.94804 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.24 11.19 55.49 0.62 -23.62 16 2 C 0.01 0.23 4.91 -17.43 -0.09 0.15 16 3 Si 0.91 20.04 29.59 -169.99 -5.03 15.01 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.27 -6.54 9.59 -15.05 -0.14 -6.69 16 8 H 0.07 1.59 7.89 -52.49 -0.41 1.17 16 9 N -0.59 -13.19 3.00 -172.32 -0.52 -13.70 16 10 C 0.17 3.70 5.11 -3.71 -0.02 3.68 16 11 C -0.18 -3.16 5.62 -26.61 -0.15 -3.30 16 12 C 0.30 5.12 1.63 -26.69 -0.04 5.08 16 13 F -0.21 -3.54 16.41 2.25 0.04 -3.50 16 14 F -0.20 -3.68 15.73 2.25 0.04 -3.64 16 15 C -0.16 -2.42 2.03 -90.50 -0.18 -2.61 16 16 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 17 C 0.13 1.80 4.83 -4.04 -0.02 1.78 16 18 N -0.72 -8.89 5.33 -61.65 -0.33 -9.22 16 19 C 0.59 7.97 7.78 -12.91 -0.10 7.87 16 20 O -0.52 -8.83 16.88 5.18 0.09 -8.74 16 21 C -0.03 -0.35 7.06 -81.93 -0.58 -0.93 16 22 C -0.10 -1.04 10.65 -39.13 -0.42 -1.46 16 23 C -0.18 -1.63 10.78 -39.94 -0.43 -2.06 16 24 C 0.09 0.82 7.74 -16.82 -0.13 0.69 16 25 Cl -0.01 -0.12 29.30 -51.86 -1.52 -1.64 16 26 N -0.53 -4.95 6.00 -6.54 -0.04 -4.99 16 27 H 0.42 3.13 8.19 -40.82 -0.33 2.80 16 28 C 0.15 2.80 5.40 -3.71 -0.02 2.78 16 29 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 30 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 31 H 0.10 2.45 6.04 -51.93 -0.31 2.14 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 34 H 0.08 1.12 7.63 -51.92 -0.40 0.72 16 35 H 0.08 1.24 7.97 -51.93 -0.41 0.83 16 36 H 0.40 4.07 6.82 -40.82 -0.28 3.79 16 37 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.03 0.67 7.92 -51.93 -0.41 0.26 16 40 H 0.06 1.04 7.13 -51.92 -0.37 0.67 16 LS Contribution 354.22 15.07 5.34 5.34 Total: -1.00 -29.31 354.22 -8.23 -37.54 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -4.59 Total: 6.19 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -2.32 Total: 4.98 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.26 Total: -51.52 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 9 Polarization: -7.22 SS G_CDS: 0.07 Total: -7.15 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.01 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.52 Total: -1.64 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.31 -8.23 -37.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046969218.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.978 kcal (2) G-P(sol) polarization free energy of solvation -29.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds