Wall clock time and date at job start Wed Apr 1 2020 04:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00176 * 2 1 4 4 H 1.48504 * 109.46981 * 240.00034 * 3 2 1 5 5 H 1.48505 * 109.47125 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47097 * 119.99833 * 3 2 1 7 7 C 1.38815 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00442 * 197.36449 * 7 2 1 9 9 N 1.36944 * 119.99762 * 17.37034 * 7 2 1 10 10 C 1.46928 * 120.62994 * 27.66014 * 9 7 2 11 11 C 1.53198 * 108.77453 * 126.41282 * 10 9 7 12 12 C 1.53039 * 109.30870 * 54.63305 * 11 10 9 13 13 F 1.39903 * 109.45682 * 178.61533 * 12 11 10 14 14 F 1.39897 * 109.45994 * 58.65884 * 12 11 10 15 15 C 1.53038 * 109.53951 * 298.63326 * 12 11 10 16 16 H 1.09002 * 109.52666 * 301.39696 * 15 12 11 17 17 C 1.53000 * 109.49611 * 181.31674 * 15 12 11 18 18 N 1.46503 * 109.47129 * 175.15975 * 17 15 12 19 19 C 1.34781 * 120.00047 * 179.97438 * 18 17 15 20 20 O 1.21710 * 119.99893 * 0.02562 * 19 18 17 21 21 C 1.46549 * 120.00063 * 180.02562 * 19 18 17 22 22 C 1.37929 * 126.23348 * 180.02562 * 21 19 18 23 23 C 1.39744 * 107.12148 * 179.97438 * 22 21 19 24 24 C 1.35663 * 107.88936 * 359.97438 * 23 22 21 25 25 Cl 1.73599 * 125.57644 * 180.02562 * 24 23 22 26 26 N 1.35576 * 108.84538 * 0.26829 * 24 23 22 27 27 H 0.96999 * 125.69501 * 179.72075 * 26 24 23 28 28 C 1.46926 * 120.63027 * 207.68240 * 9 7 2 29 29 H 0.97002 * 119.99842 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.58799 * 246.20048 * 10 9 7 31 31 H 1.09002 * 109.58533 * 6.62973 * 10 9 7 32 32 H 1.08995 * 109.49742 * 174.58399 * 11 10 9 33 33 H 1.08999 * 109.49418 * 294.68463 * 11 10 9 34 34 H 1.09009 * 109.47069 * 55.16393 * 17 15 12 35 35 H 1.08997 * 109.47492 * 295.16528 * 17 15 12 36 36 H 0.96995 * 119.99839 * 0.02562 * 18 17 15 37 37 H 1.07998 * 126.43739 * 359.97438 * 22 21 19 38 38 H 1.07999 * 126.05699 * 179.97438 * 23 22 21 39 39 H 1.08993 * 109.58631 * 113.79598 * 28 9 7 40 40 H 1.09007 * 109.58340 * 353.37581 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2235 0.2797 9 7 1.3723 -2.3612 -0.3530 10 6 0.2277 -2.3348 -1.2739 11 6 0.5005 -3.3052 -2.4275 12 6 0.8183 -4.6902 -1.8593 13 9 1.0370 -5.5864 -2.9111 14 9 -0.2586 -5.1347 -1.0849 15 6 2.0741 -4.6102 -0.9882 16 1 2.9083 -4.2408 -1.5847 17 6 2.4098 -6.0015 -0.4473 18 7 3.6743 -5.9466 0.2904 19 6 4.1712 -7.0625 0.8601 20 8 3.5695 -8.1158 0.7613 21 6 5.4358 -7.0074 1.5986 22 6 6.0588 -8.0647 2.2283 23 6 7.2317 -7.5678 2.8031 24 6 7.3053 -6.2429 2.5209 25 17 8.5809 -5.1743 3.0153 26 7 6.2170 -5.8889 1.7941 27 1 6.0217 -4.9976 1.4649 28 6 1.8191 -3.6547 0.1817 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6745 -2.6411 -0.7444 31 1 0.0985 -1.3265 -1.6674 32 1 -0.3803 -3.3675 -3.0665 33 1 1.3491 -2.9476 -3.0106 34 1 2.5038 -6.7013 -1.2778 35 1 1.6142 -6.3338 0.2195 36 1 4.1536 -5.1070 0.3695 37 1 5.7065 -9.0847 2.2694 38 1 7.9520 -8.1376 3.3714 39 1 1.0468 -4.0686 0.8299 40 1 2.7399 -3.5173 0.7486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046969218.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:31 Heat of formation + Delta-G solvation = -97.172003 kcal Electronic energy + Delta-G solvation = -28544.617403 eV Core-core repulsion = 24056.370375 eV Total energy + Delta-G solvation = -4488.247028 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.095 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.00764 -47.96173 -42.43860 -40.41547 -38.94399 -37.73873 -36.50029 -34.46701 -32.74366 -32.16332 -31.98249 -30.19524 -27.32192 -26.88154 -24.37410 -23.75232 -22.86791 -21.71851 -21.42716 -21.16319 -20.25535 -18.90269 -18.31902 -17.79254 -17.33247 -17.01272 -16.96910 -16.65447 -16.50016 -15.95067 -15.44709 -15.29264 -15.18436 -15.04910 -14.80625 -14.64379 -14.29873 -14.26138 -14.05094 -13.84860 -13.72769 -13.29490 -13.21771 -13.08827 -13.04807 -12.74675 -12.57128 -12.33993 -12.29876 -12.21750 -11.93068 -11.68633 -11.53868 -11.20625 -10.57912 -10.37309 -10.21404 -9.27100 -8.82957 -7.92547 -5.39203 0.18681 0.55042 1.47194 1.49850 1.52440 1.58322 1.83701 2.16733 2.21333 2.47926 2.77355 3.13669 3.20432 3.24575 3.49158 3.55745 3.71240 3.88510 4.03117 4.12345 4.20566 4.23390 4.46592 4.54155 4.62656 4.74030 4.76953 4.79509 4.86258 5.02391 5.06008 5.14649 5.28078 5.37725 5.57546 5.64155 5.65764 6.04003 6.31039 6.33716 6.95603 7.06400 7.74280 8.26809 9.15402 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.009040 B = 0.003498 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3096.730995 B = 8002.265726 C =10679.153562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.044 4.044 3 Si 0.966 3.034 4 H -0.275 1.275 5 H -0.300 1.300 6 H -0.275 1.275 7 C -0.266 4.266 8 H 0.081 0.919 9 N -0.605 5.605 10 C 0.177 3.823 11 C -0.169 4.169 12 C 0.300 3.700 13 F -0.206 7.206 14 F -0.209 7.209 15 C -0.140 4.140 16 H 0.121 0.879 17 C 0.136 3.864 18 N -0.712 5.712 19 C 0.592 3.408 20 O -0.563 6.563 21 C -0.049 4.049 22 C -0.102 4.102 23 C -0.178 4.178 24 C 0.090 3.910 25 Cl -0.003 7.003 26 N -0.524 5.524 27 H 0.430 0.570 28 C 0.154 3.846 29 H 0.251 0.749 30 H 0.004 0.996 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.409 0.591 37 H 0.162 0.838 38 H 0.177 0.823 39 H 0.016 0.984 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.729 -11.033 1.308 18.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.240 4.240 3 Si 0.795 3.205 4 H -0.201 1.201 5 H -0.227 1.227 6 H -0.201 1.201 7 C -0.396 4.396 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.051 3.949 11 C -0.208 4.208 12 C 0.263 3.737 13 F -0.187 7.187 14 F -0.191 7.191 15 C -0.161 4.161 16 H 0.139 0.861 17 C 0.011 3.989 18 N -0.364 5.364 19 C 0.380 3.620 20 O -0.442 6.442 21 C -0.163 4.163 22 C -0.129 4.129 23 C -0.204 4.204 24 C -0.054 4.054 25 Cl 0.026 6.974 26 N -0.125 5.125 27 H 0.271 0.729 28 C 0.028 3.972 29 H 0.060 0.940 30 H 0.022 0.978 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.246 0.754 37 H 0.180 0.820 38 H 0.195 0.805 39 H 0.034 0.966 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.194 -11.399 1.204 18.244 hybrid contribution -0.120 1.864 -0.070 1.869 sum 14.074 -9.535 1.134 17.038 Atomic orbital electron populations 1.70165 1.06820 1.26192 1.54728 1.25794 0.95876 1.01573 1.00770 0.85366 0.77538 0.79192 0.78449 1.20072 1.22690 1.20082 1.19512 0.93374 0.85239 1.41445 0.90139 1.44309 1.35615 1.02167 1.50616 1.20574 0.88432 0.97823 0.88110 1.23099 1.04743 0.92151 1.00828 1.21036 0.85040 0.87275 0.80327 1.92975 1.95082 1.71322 1.59328 1.92958 1.58886 1.90974 1.76235 1.22790 0.97114 0.96657 0.99513 0.86143 1.21159 0.85756 0.95638 0.96301 1.45692 1.24348 1.11573 1.54751 1.17125 0.83290 0.83537 0.78024 1.90850 1.60667 1.30792 1.61890 1.20197 0.96019 0.88260 1.11809 1.21527 0.94631 0.98832 0.97912 1.20969 1.00742 0.91409 1.07245 1.21248 0.88593 0.92604 1.02948 1.98428 1.45140 1.64659 1.89185 1.42000 1.17209 1.11097 1.42191 0.72926 1.20969 0.98910 0.85160 0.92174 0.93952 0.97797 0.90736 0.88995 0.88187 0.90487 0.91678 0.75428 0.82045 0.80548 0.96579 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.61 11.19 21.65 0.24 -51.37 16 2 C -0.04 -2.24 4.91 84.86 0.42 -1.83 16 3 Si 0.97 41.00 29.59 68.60 2.03 43.03 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 5 H -0.30 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.27 -12.85 9.59 84.03 0.81 -12.05 16 8 H 0.08 3.61 7.89 -2.91 -0.02 3.59 16 9 N -0.60 -26.75 3.00 -699.08 -2.09 -28.85 16 10 C 0.18 7.80 5.11 86.36 0.44 8.24 16 11 C -0.17 -5.76 5.62 30.67 0.17 -5.59 16 12 C 0.30 9.80 1.63 30.62 0.05 9.85 16 13 F -0.21 -6.44 16.41 44.97 0.74 -5.70 16 14 F -0.21 -7.72 15.73 44.97 0.71 -7.01 16 15 C -0.14 -4.07 2.03 -10.72 -0.02 -4.10 16 16 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 17 C 0.14 3.70 4.83 86.38 0.42 4.12 16 18 N -0.71 -16.41 5.33 -467.18 -2.49 -18.90 16 19 C 0.59 15.42 7.78 86.41 0.67 16.10 16 20 O -0.56 -18.84 16.88 -4.38 -0.07 -18.91 16 21 C -0.05 -1.05 7.06 40.30 0.28 -0.77 16 22 C -0.10 -1.99 10.65 22.56 0.24 -1.75 16 23 C -0.18 -2.83 10.78 22.04 0.24 -2.59 16 24 C 0.09 1.45 7.74 83.52 0.65 2.10 16 25 Cl 0.00 -0.04 29.30 -2.72 -0.08 -0.12 16 26 N -0.52 -8.65 6.00 -174.62 -1.05 -9.70 16 27 H 0.43 5.35 8.19 -92.71 -0.76 4.59 16 28 C 0.15 5.46 5.40 86.36 0.47 5.93 16 29 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 30 H 0.00 0.19 7.92 -2.39 -0.02 0.17 16 31 H 0.07 3.70 6.04 -2.39 -0.01 3.69 16 32 H 0.09 2.86 8.14 -2.39 -0.02 2.85 16 33 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.08 2.14 7.63 -2.38 -0.02 2.12 16 35 H 0.06 2.00 7.97 -2.39 -0.02 1.98 16 36 H 0.41 7.42 6.82 -92.71 -0.63 6.79 16 37 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 38 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 39 H 0.02 0.64 7.92 -2.39 -0.02 0.62 16 40 H 0.08 2.54 7.13 -2.38 -0.02 2.53 16 Total: -1.00 -63.05 354.22 2.48 -60.56 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -0.28 Total: 19.30 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 4.83 Total: 17.67 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -5.39 Total: -108.81 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.07 Total: -18.91 kcal Atomic # 9 Polarization: -14.15 SS G_CDS: 1.45 Total: -12.71 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -0.08 Total: -0.12 kcal Total: -63.05 2.48 -60.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046969218.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.611 kcal (2) G-P(sol) polarization free energy of solvation -63.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds