Wall clock time and date at job start Wed Apr 1 2020 04:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46889 * 2 1 4 4 C 1.53000 * 109.47245 * 240.00747 * 2 1 3 5 5 C 1.53002 * 109.47343 * 173.68906 * 4 2 1 6 6 H 1.08998 * 109.46869 * 308.39145 * 5 4 2 7 7 C 1.52992 * 109.47044 * 188.38677 * 5 4 2 8 8 N 1.46499 * 109.46977 * 68.38967 * 5 4 2 9 9 C 1.36934 * 119.99742 * 212.57932 * 8 5 4 10 10 H 1.08003 * 120.00558 * 359.97438 * 9 8 5 11 11 C 1.38813 * 120.00001 * 180.02562 * 9 8 5 12 12 N 1.31617 * 120.00295 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00076 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47329 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47521 * 120.00008 * 13 11 9 16 16 H 1.48504 * 109.47466 * 239.99737 * 13 11 9 17 17 N 1.46496 * 109.47474 * 120.00126 * 2 1 3 18 18 C 1.34777 * 120.00218 * 243.53495 * 17 2 1 19 19 O 1.21715 * 119.99766 * 5.25472 * 18 17 2 20 20 C 1.46543 * 119.99991 * 185.25133 * 18 17 2 21 21 C 1.37957 * 126.22348 * 185.32633 * 20 18 17 22 22 C 1.39797 * 107.12947 * 180.02562 * 21 20 18 23 23 Cl 1.73598 * 126.06260 * 180.02562 * 22 21 20 24 24 C 1.35716 * 107.87056 * 0.02562 * 22 21 20 25 25 Cl 1.73599 * 125.57920 * 179.73515 * 24 22 21 26 26 N 1.35659 * 108.83536 * 359.97438 * 24 22 21 27 27 C 1.46501 * 125.69202 * 179.97438 * 26 24 22 28 28 H 1.08996 * 109.47410 * 59.99997 * 1 2 3 29 29 H 1.09002 * 109.46889 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47330 * 299.99467 * 1 2 3 31 31 H 1.09004 * 109.46861 * 293.68439 * 4 2 1 32 32 H 1.09002 * 109.47412 * 53.68395 * 4 2 1 33 33 H 1.09008 * 109.47362 * 59.99922 * 7 5 4 34 34 H 1.09004 * 109.47238 * 179.97438 * 7 5 4 35 35 H 1.08998 * 109.47670 * 299.99978 * 7 5 4 36 36 H 0.97002 * 120.00227 * 32.57701 * 8 5 4 37 37 H 0.96994 * 120.00170 * 179.97438 * 12 11 9 38 38 H 0.97003 * 119.99601 * 63.53456 * 17 2 1 39 39 H 1.08006 * 126.43655 * 0.02562 * 21 20 18 40 40 H 1.08992 * 109.47479 * 97.23856 * 27 26 24 41 41 H 1.09007 * 109.46695 * 217.23746 * 27 26 24 42 42 H 1.09000 * 109.47150 * 337.23136 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5618 -0.5852 -1.3311 6 1 3.8384 0.4647 -1.2356 7 6 4.0499 -1.1208 -2.6786 8 7 4.1796 -1.3535 -0.2475 9 6 5.3480 -0.9196 0.3196 10 1 5.8144 -0.0112 -0.0323 11 6 5.9337 -1.6478 1.3460 12 7 5.3658 -2.7551 1.7745 13 14 7.5280 -1.0563 2.1191 14 1 7.9580 0.2049 1.4635 15 1 7.3149 -0.8125 3.5683 16 1 8.5785 -2.0907 1.9405 17 7 2.0184 -0.6906 1.1961 18 6 2.7335 -0.0167 2.1186 19 8 2.8923 1.1848 2.0068 20 6 3.3196 -0.7306 3.2562 21 6 3.9826 -0.1599 4.3230 22 6 4.3731 -1.2012 5.1700 23 17 5.2429 -1.0327 6.6628 24 6 3.9516 -2.3673 4.6181 25 17 4.1993 -3.9495 5.2880 26 7 3.3096 -2.0943 3.4546 27 6 2.7072 -3.0841 2.5581 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.7719 -1.7762 -1.1947 32 1 1.5874 -0.2766 -2.1357 33 1 3.5902 -0.5492 -3.4849 34 1 5.1340 -1.0236 -2.7371 35 1 3.7733 -2.1708 -2.7741 36 1 3.7610 -2.1696 0.0683 37 1 5.7752 -3.2641 2.4915 38 1 1.8271 -1.6329 1.3241 39 1 4.1656 0.8936 4.4752 40 1 1.6388 -3.1555 2.7611 41 1 2.8608 -2.7780 1.5232 42 1 3.1741 -4.0552 2.7228 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134553308.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:39 Heat of formation + Delta-G solvation = 21.206660 kcal Electronic energy + Delta-G solvation = -28569.502305 eV Core-core repulsion = 24638.185240 eV Total energy + Delta-G solvation = -3931.317064 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.091 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.93962 -38.83799 -36.62137 -36.24414 -35.98013 -34.35907 -32.85422 -31.80705 -30.71641 -28.62057 -28.19270 -26.33253 -26.13904 -23.61432 -22.80331 -20.60185 -20.29479 -20.11619 -19.32396 -17.42527 -17.20519 -15.94599 -15.50442 -15.34029 -14.80593 -14.22050 -14.05881 -13.74761 -13.65379 -13.59561 -13.11090 -12.97687 -12.77589 -12.70237 -12.50540 -12.17470 -12.04982 -11.83928 -11.69376 -11.47216 -11.42202 -10.97597 -10.90815 -10.79408 -10.71784 -10.69226 -10.48190 -10.40437 -10.14968 -9.89398 -9.63139 -9.41666 -8.95340 -8.45791 -8.08272 -7.51464 -6.91378 -5.80411 -3.02639 1.92361 2.15140 2.60587 2.90757 3.49999 3.51207 3.58378 3.64474 3.80837 4.17389 4.66506 5.00894 5.27655 5.33409 5.38593 5.45277 5.48989 5.57429 5.62492 5.66076 5.81240 5.87229 5.96427 6.10092 6.16963 6.17209 6.24823 6.27213 6.31800 6.41374 6.48940 6.64435 6.84995 6.87273 7.01960 7.06302 7.24700 7.43750 7.77112 8.08604 8.40965 8.87200 9.54881 10.04524 10.42384 11.41632 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.012123 B = 0.005543 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.085394 B = 5050.313146 C = 5793.651894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.098 0.902 4 C -0.136 4.136 5 C 0.170 3.830 6 H 0.052 0.948 7 C -0.162 4.162 8 N -0.715 5.715 9 C -0.224 4.224 10 H 0.064 0.936 11 C 0.006 3.994 12 N -0.933 5.933 13 Si 0.886 3.114 14 H -0.286 1.286 15 H -0.280 1.280 16 H -0.298 1.298 17 N -0.712 5.712 18 C 0.623 3.377 19 O -0.542 6.542 20 C 0.021 3.979 21 C -0.115 4.115 22 C -0.106 4.106 23 Cl -0.056 7.056 24 C 0.109 3.891 25 Cl -0.020 7.020 26 N -0.361 5.361 27 C 0.079 3.921 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.034 0.966 34 H 0.051 0.949 35 H 0.042 0.958 36 H 0.374 0.626 37 H 0.252 0.748 38 H 0.392 0.608 39 H 0.152 0.848 40 H 0.055 0.945 41 H 0.113 0.887 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.468 -1.648 1.193 10.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.116 0.884 4 C -0.176 4.176 5 C 0.060 3.940 6 H 0.071 0.929 7 C -0.223 4.223 8 N -0.357 5.357 9 C -0.354 4.354 10 H 0.082 0.918 11 C -0.190 4.190 12 N -0.583 5.583 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.206 1.206 16 H -0.226 1.226 17 N -0.366 5.366 18 C 0.411 3.589 19 O -0.419 6.419 20 C -0.094 4.094 21 C -0.141 4.141 22 C -0.141 4.141 23 Cl -0.028 7.028 24 C -0.037 4.037 25 Cl 0.008 6.992 26 N -0.035 5.035 27 C -0.062 4.062 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.208 0.792 37 H 0.062 0.938 38 H 0.230 0.770 39 H 0.169 0.831 40 H 0.074 0.926 41 H 0.131 0.869 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.276 -1.055 1.052 10.383 hybrid contribution 1.270 -0.880 0.624 1.666 sum -9.006 -1.935 1.676 9.363 Atomic orbital electron populations 1.22185 0.96052 1.01684 1.02032 1.20913 0.92271 0.98649 0.84434 0.88387 1.22338 0.98304 1.00248 0.96689 1.20260 0.89485 0.95951 0.88317 0.92938 1.22426 1.01411 1.00093 0.98333 1.42387 1.26558 1.27553 1.39227 1.19173 0.98733 1.05413 1.12128 0.91833 1.24312 0.98529 0.97240 0.98889 1.69523 1.40423 1.16832 1.31477 0.86411 0.84057 0.77469 0.80318 1.21143 1.20609 1.22595 1.46048 1.55494 1.13498 1.21533 1.16453 0.76366 0.85967 0.80137 1.90751 1.60737 1.13949 1.76450 1.20064 1.09620 0.80969 0.98755 1.20771 1.01538 0.98644 0.93110 1.19308 1.08976 0.92390 0.93415 1.98279 1.75426 1.97855 1.31224 1.20170 1.06222 0.86494 0.90766 1.98346 1.95504 1.22793 1.82541 1.43436 1.39359 1.06140 1.14585 1.22247 0.95075 0.93102 0.95819 0.91781 0.92862 0.92537 0.92314 0.91293 0.94665 0.92987 0.93865 0.79170 0.93793 0.76954 0.83059 0.92639 0.86934 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.52 37.16 0.35 -1.45 16 2 C 0.14 2.07 2.92 -67.93 -0.20 1.87 16 3 H 0.10 1.67 6.90 -51.93 -0.36 1.31 16 4 C -0.14 -1.90 4.54 -26.73 -0.12 -2.02 16 5 C 0.17 3.03 2.90 -67.93 -0.20 2.84 16 6 H 0.05 1.05 7.97 -51.93 -0.41 0.64 16 7 C -0.16 -2.69 9.51 37.15 0.35 -2.34 16 8 N -0.72 -15.06 3.32 -53.43 -0.18 -15.23 16 9 C -0.22 -5.60 9.44 -15.06 -0.14 -5.74 16 10 H 0.06 1.72 7.82 -52.48 -0.41 1.31 16 11 C 0.01 0.15 5.31 -17.43 -0.09 0.06 16 12 N -0.93 -22.58 9.38 55.49 0.52 -22.06 16 13 Si 0.89 22.43 29.55 -169.99 -5.02 17.40 16 14 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 15 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 16 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 17 N -0.71 -11.58 2.96 -55.16 -0.16 -11.74 16 18 C 0.62 12.43 6.85 -12.91 -0.09 12.34 16 19 O -0.54 -12.35 16.24 5.18 0.08 -12.27 16 20 C 0.02 0.42 6.69 -81.94 -0.55 -0.13 16 21 C -0.11 -2.33 10.64 -39.10 -0.42 -2.75 16 22 C -0.11 -2.07 6.66 -39.90 -0.27 -2.34 16 23 Cl -0.06 -0.99 29.12 -51.86 -1.51 -2.50 16 24 C 0.11 2.03 7.29 -16.76 -0.12 1.91 16 25 Cl -0.02 -0.33 28.35 -51.86 -1.47 -1.80 16 26 N -0.36 -6.56 1.96 -116.65 -0.23 -6.79 16 27 C 0.08 1.22 7.69 59.85 0.46 1.68 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 33 H 0.03 0.49 8.14 -51.92 -0.42 0.07 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.37 7.89 5.37 -40.82 -0.22 7.67 16 37 H 0.25 6.35 8.31 -40.82 -0.34 6.02 16 38 H 0.39 5.78 4.72 -40.82 -0.19 5.59 16 39 H 0.15 2.98 8.06 -52.48 -0.42 2.56 16 40 H 0.06 0.66 8.05 -51.93 -0.42 0.24 16 41 H 0.11 1.88 3.51 -51.92 -0.18 1.70 16 42 H 0.10 1.51 7.53 -51.93 -0.39 1.11 16 LS Contribution 365.51 15.07 5.51 5.51 Total: -1.00 -27.45 365.51 -9.01 -36.46 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -5.52 Total: 9.09 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -1.03 Total: 3.92 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.05 Total: -55.82 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.08 Total: -12.27 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -2.98 Total: -4.30 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.45 -9.01 -36.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134553308.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.667 kcal (2) G-P(sol) polarization free energy of solvation -27.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds