Wall clock time and date at job start Wed Apr 1 2020 04:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46889 * 2 1 4 4 C 1.53000 * 109.47245 * 240.00747 * 2 1 3 5 5 C 1.53002 * 109.47343 * 173.68906 * 4 2 1 6 6 H 1.08998 * 109.46869 * 308.39145 * 5 4 2 7 7 C 1.52992 * 109.47044 * 188.38677 * 5 4 2 8 8 N 1.46499 * 109.46977 * 68.38967 * 5 4 2 9 9 C 1.36934 * 119.99742 * 212.57932 * 8 5 4 10 10 H 1.08003 * 120.00558 * 359.97438 * 9 8 5 11 11 C 1.38813 * 120.00001 * 180.02562 * 9 8 5 12 12 N 1.31617 * 120.00295 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00076 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47329 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47521 * 120.00008 * 13 11 9 16 16 H 1.48504 * 109.47466 * 239.99737 * 13 11 9 17 17 N 1.46496 * 109.47474 * 120.00126 * 2 1 3 18 18 C 1.34777 * 120.00218 * 243.53495 * 17 2 1 19 19 O 1.21715 * 119.99766 * 5.25472 * 18 17 2 20 20 C 1.46543 * 119.99991 * 185.25133 * 18 17 2 21 21 C 1.37957 * 126.22348 * 185.32633 * 20 18 17 22 22 C 1.39797 * 107.12947 * 180.02562 * 21 20 18 23 23 Cl 1.73598 * 126.06260 * 180.02562 * 22 21 20 24 24 C 1.35716 * 107.87056 * 0.02562 * 22 21 20 25 25 Cl 1.73599 * 125.57920 * 179.73515 * 24 22 21 26 26 N 1.35659 * 108.83536 * 359.97438 * 24 22 21 27 27 C 1.46501 * 125.69202 * 179.97438 * 26 24 22 28 28 H 1.08996 * 109.47410 * 59.99997 * 1 2 3 29 29 H 1.09002 * 109.46889 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47330 * 299.99467 * 1 2 3 31 31 H 1.09004 * 109.46861 * 293.68439 * 4 2 1 32 32 H 1.09002 * 109.47412 * 53.68395 * 4 2 1 33 33 H 1.09008 * 109.47362 * 59.99922 * 7 5 4 34 34 H 1.09004 * 109.47238 * 179.97438 * 7 5 4 35 35 H 1.08998 * 109.47670 * 299.99978 * 7 5 4 36 36 H 0.97002 * 120.00227 * 32.57701 * 8 5 4 37 37 H 0.96994 * 120.00170 * 179.97438 * 12 11 9 38 38 H 0.97003 * 119.99601 * 63.53456 * 17 2 1 39 39 H 1.08006 * 126.43655 * 0.02562 * 21 20 18 40 40 H 1.08992 * 109.47479 * 97.23856 * 27 26 24 41 41 H 1.09007 * 109.46695 * 217.23746 * 27 26 24 42 42 H 1.09000 * 109.47150 * 337.23136 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5618 -0.5852 -1.3311 6 1 3.8384 0.4647 -1.2356 7 6 4.0499 -1.1208 -2.6786 8 7 4.1796 -1.3535 -0.2475 9 6 5.3480 -0.9196 0.3196 10 1 5.8144 -0.0112 -0.0323 11 6 5.9337 -1.6478 1.3460 12 7 5.3658 -2.7551 1.7745 13 14 7.5280 -1.0563 2.1191 14 1 7.9580 0.2049 1.4635 15 1 7.3149 -0.8125 3.5683 16 1 8.5785 -2.0907 1.9405 17 7 2.0184 -0.6906 1.1961 18 6 2.7335 -0.0167 2.1186 19 8 2.8923 1.1848 2.0068 20 6 3.3196 -0.7306 3.2562 21 6 3.9826 -0.1599 4.3230 22 6 4.3731 -1.2012 5.1700 23 17 5.2429 -1.0327 6.6628 24 6 3.9516 -2.3673 4.6181 25 17 4.1993 -3.9495 5.2880 26 7 3.3096 -2.0943 3.4546 27 6 2.7072 -3.0841 2.5581 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.7719 -1.7762 -1.1947 32 1 1.5874 -0.2766 -2.1357 33 1 3.5902 -0.5492 -3.4849 34 1 5.1340 -1.0236 -2.7371 35 1 3.7733 -2.1708 -2.7741 36 1 3.7610 -2.1696 0.0683 37 1 5.7752 -3.2641 2.4915 38 1 1.8271 -1.6329 1.3241 39 1 4.1656 0.8936 4.4752 40 1 1.6388 -3.1555 2.7611 41 1 2.8608 -2.7780 1.5232 42 1 3.1741 -4.0552 2.7228 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134553308.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:38 Heat of formation + Delta-G solvation = 7.799776 kcal Electronic energy + Delta-G solvation = -28570.083671 eV Core-core repulsion = 24638.185240 eV Total energy + Delta-G solvation = -3931.898430 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.091 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.39307 -40.26897 -38.10324 -37.63368 -37.41632 -35.89596 -34.38749 -33.38327 -32.12633 -30.26137 -29.60185 -27.54602 -27.42072 -25.44447 -24.21496 -21.94563 -21.75325 -21.51833 -20.76660 -19.08989 -18.82316 -17.38438 -16.86731 -16.76130 -16.59128 -15.64595 -15.54111 -15.37635 -15.26323 -15.05354 -14.52612 -14.36857 -14.20292 -14.07669 -13.86649 -13.53905 -13.31557 -13.22203 -12.92646 -12.82318 -12.77435 -12.73693 -12.56949 -12.27027 -12.18257 -12.13875 -12.07792 -11.86021 -11.67441 -11.55819 -11.33528 -10.97040 -10.81969 -9.89123 -9.53296 -8.98941 -8.68746 -7.79378 -4.94845 0.44783 0.69724 1.16278 1.39463 1.42241 1.49480 1.55147 2.08139 2.45619 2.65686 2.70375 3.58238 3.80712 3.91223 3.96879 4.06726 4.28043 4.29300 4.39795 4.47234 4.58657 4.73202 4.74390 4.78216 4.88283 4.92202 4.96177 4.99666 5.14956 5.21897 5.24781 5.36441 5.41074 5.48251 5.66088 5.69227 5.73112 5.82580 6.03533 6.45682 6.70694 7.41097 7.58321 8.24365 8.57873 9.39463 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.012123 B = 0.005543 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.085394 B = 5050.313146 C = 5793.651894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.137 3.863 3 H 0.068 0.932 4 C -0.123 4.123 5 C 0.162 3.838 6 H 0.023 0.977 7 C -0.152 4.152 8 N -0.713 5.713 9 C -0.218 4.218 10 H 0.035 0.965 11 C -0.011 4.011 12 N -0.915 5.915 13 Si 0.901 3.099 14 H -0.298 1.298 15 H -0.292 1.292 16 H -0.305 1.305 17 N -0.697 5.697 18 C 0.617 3.383 19 O -0.582 6.582 20 C 0.008 3.992 21 C -0.138 4.138 22 C -0.122 4.122 23 Cl -0.046 7.046 24 C 0.105 3.895 25 Cl 0.002 6.998 26 N -0.355 5.355 27 C 0.072 3.928 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.065 0.935 34 H 0.023 0.977 35 H 0.050 0.950 36 H 0.377 0.623 37 H 0.246 0.754 38 H 0.402 0.598 39 H 0.145 0.855 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.862 -3.411 -0.040 13.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.033 3.967 3 H 0.086 0.914 4 C -0.162 4.162 5 C 0.054 3.946 6 H 0.042 0.958 7 C -0.212 4.212 8 N -0.356 5.356 9 C -0.350 4.350 10 H 0.053 0.947 11 C -0.207 4.207 12 N -0.565 5.565 13 Si 0.736 3.264 14 H -0.225 1.225 15 H -0.220 1.220 16 H -0.233 1.233 17 N -0.351 5.351 18 C 0.406 3.594 19 O -0.462 6.462 20 C -0.108 4.108 21 C -0.164 4.164 22 C -0.156 4.156 23 Cl -0.018 7.018 24 C -0.041 4.041 25 Cl 0.030 6.970 26 N -0.028 5.028 27 C -0.068 4.068 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.120 0.880 33 H 0.084 0.916 34 H 0.042 0.958 35 H 0.069 0.931 36 H 0.211 0.789 37 H 0.056 0.944 38 H 0.242 0.758 39 H 0.162 0.838 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.708 -2.859 -0.224 13.027 hybrid contribution 2.028 -0.319 0.990 2.279 sum -10.680 -3.178 0.766 11.169 Atomic orbital electron populations 1.22091 0.92688 1.03299 1.02794 1.21090 0.94785 0.96965 0.83891 0.91399 1.22234 0.94836 1.01555 0.97571 1.20450 0.92299 0.93918 0.87977 0.95841 1.22273 0.99736 1.00949 0.98263 1.42321 1.25467 1.27834 1.39928 1.18954 0.99902 1.04164 1.12009 0.94657 1.24363 0.98728 0.98023 0.99583 1.69517 1.39677 1.16196 1.31140 0.86188 0.84290 0.76532 0.79391 1.22500 1.21962 1.23302 1.46023 1.54040 1.13843 1.21147 1.16564 0.76583 0.85592 0.80692 1.90724 1.62477 1.15595 1.77438 1.20105 1.09990 0.81873 0.98789 1.20899 1.02560 0.98818 0.94118 1.19456 1.09525 0.92630 0.94025 1.98270 1.75195 1.97872 1.30447 1.20329 1.05631 0.87314 0.90840 1.98349 1.95377 1.21038 1.82220 1.43560 1.38777 1.05879 1.14603 1.22468 0.97522 0.92149 0.94661 0.89567 0.90733 0.93354 0.90517 0.88011 0.91636 0.95775 0.93087 0.78850 0.94419 0.75804 0.83762 0.88339 0.88045 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.52 71.98 0.69 -2.13 16 2 C 0.14 3.68 2.92 44.99 0.13 3.82 16 3 H 0.07 2.29 6.90 -2.39 -0.02 2.27 16 4 C -0.12 -3.00 4.54 30.60 0.14 -2.86 16 5 C 0.16 5.56 2.90 44.99 0.13 5.69 16 6 H 0.02 0.94 7.97 -2.39 -0.02 0.92 16 7 C -0.15 -4.71 9.51 71.98 0.68 -4.02 16 8 N -0.71 -29.41 3.32 -322.95 -1.07 -30.48 16 9 C -0.22 -11.03 9.44 84.03 0.79 -10.23 16 10 H 0.04 1.98 7.82 -2.91 -0.02 1.96 16 11 C -0.01 -0.57 5.31 84.86 0.45 -0.12 16 12 N -0.92 -43.51 9.38 21.65 0.20 -43.31 16 13 Si 0.90 46.40 29.55 68.60 2.03 48.43 16 14 H -0.30 -15.85 7.11 99.48 0.71 -15.14 16 15 H -0.29 -15.59 7.11 99.48 0.71 -14.88 16 16 H -0.30 -15.89 7.11 99.48 0.71 -15.18 16 17 N -0.70 -21.62 2.96 -446.63 -1.32 -22.94 16 18 C 0.62 24.73 6.85 86.41 0.59 25.33 16 19 O -0.58 -27.39 16.24 -4.40 -0.07 -27.46 16 20 C 0.01 0.34 6.69 40.30 0.27 0.61 16 21 C -0.14 -5.73 10.64 22.58 0.24 -5.49 16 22 C -0.12 -4.76 6.66 22.06 0.15 -4.61 16 23 Cl -0.05 -1.63 29.12 -2.72 -0.08 -1.70 16 24 C 0.11 3.83 7.29 83.52 0.61 4.44 16 25 Cl 0.00 0.05 28.35 -2.72 -0.08 -0.02 16 26 N -0.35 -12.48 1.96 -522.96 -1.03 -13.51 16 27 C 0.07 2.04 7.69 127.77 0.98 3.02 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.10 1.90 8.13 -2.39 -0.02 1.89 16 33 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.38 15.18 5.37 -92.71 -0.50 14.68 16 37 H 0.25 12.14 8.31 -92.71 -0.77 11.37 16 38 H 0.40 10.77 4.72 -92.71 -0.44 10.34 16 39 H 0.14 6.01 8.06 -2.91 -0.02 5.98 16 40 H 0.10 1.95 8.05 -2.39 -0.02 1.93 16 41 H 0.10 3.13 3.51 -2.38 -0.01 3.12 16 42 H 0.10 2.75 7.53 -2.39 -0.02 2.73 16 Total: -1.00 -61.28 365.51 4.57 -56.71 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.13 Total: 20.87 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 5.85 Total: 13.43 kcal Atomic # 7 Polarization: -107.03 SS G_CDS: -3.22 Total: -110.24 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.07 Total: -27.46 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.16 Total: -1.73 kcal Total: -61.28 4.57 -56.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134553308.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.515 kcal (2) G-P(sol) polarization free energy of solvation -61.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds