Wall clock time and date at job start Wed Apr 1 2020 04:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46720 * 2 1 4 4 C 1.36935 * 120.00425 * 276.26446 * 3 2 1 5 5 H 1.07995 * 119.99624 * 38.86195 * 4 3 2 6 6 C 1.38814 * 120.00476 * 218.86332 * 4 3 2 7 7 N 1.31622 * 119.99889 * 2.56424 * 6 4 3 8 8 Si 1.86791 * 120.00204 * 182.56243 * 6 4 3 9 9 H 1.48498 * 109.47211 * 90.00146 * 8 6 4 10 10 H 1.48507 * 109.47185 * 210.00107 * 8 6 4 11 11 H 1.48503 * 109.47296 * 329.99701 * 8 6 4 12 12 C 1.46506 * 119.99887 * 96.27099 * 3 2 1 13 13 H 1.09000 * 109.47073 * 179.61522 * 12 3 2 14 14 C 1.53003 * 109.47433 * 59.61026 * 12 3 2 15 15 C 1.53000 * 109.46785 * 299.60894 * 12 3 2 16 16 N 1.46501 * 109.47512 * 305.00108 * 15 12 3 17 17 C 1.34771 * 120.00037 * 180.02562 * 16 15 12 18 18 O 1.21718 * 120.00419 * 4.15032 * 17 16 15 19 19 C 1.46549 * 119.99961 * 184.15317 * 17 16 15 20 20 C 1.37961 * 126.21790 * 4.87570 * 19 17 16 21 21 C 1.39794 * 107.12234 * 180.02562 * 20 19 17 22 22 Cl 1.73605 * 126.05811 * 179.97438 * 21 20 19 23 23 C 1.35724 * 107.87709 * 359.97438 * 21 20 19 24 24 Cl 1.73602 * 125.58160 * 180.02562 * 23 21 20 25 25 N 1.35659 * 108.82856 * 359.73490 * 23 21 20 26 26 C 1.46504 * 125.69241 * 180.26343 * 25 23 21 27 27 H 1.09008 * 109.46887 * 59.99809 * 1 2 3 28 28 H 1.08995 * 109.47102 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47531 * 300.00393 * 1 2 3 30 30 H 1.08998 * 109.46857 * 120.00056 * 2 1 3 31 31 H 1.08995 * 109.47303 * 240.00106 * 2 1 3 32 32 H 0.97000 * 120.00182 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.46654 * 300.00313 * 14 12 3 34 34 H 1.09006 * 109.46937 * 59.99868 * 14 12 3 35 35 H 1.08995 * 109.47379 * 180.02562 * 14 12 3 36 36 H 1.09006 * 109.47287 * 65.00479 * 15 12 3 37 37 H 1.09000 * 109.47012 * 184.99886 * 15 12 3 38 38 H 0.97002 * 119.99823 * 359.97438 * 16 15 12 39 39 H 1.07996 * 126.44202 * 0.02562 * 20 19 17 40 40 H 1.09001 * 109.47244 * 272.78052 * 26 25 23 41 41 H 1.09003 * 109.47029 * 32.78331 * 26 25 23 42 42 H 1.09005 * 109.46969 * 152.78207 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1245 2.0700 -1.1788 5 1 1.3687 1.9546 -1.9415 6 6 3.2035 2.9165 -1.3933 7 7 4.1506 3.0187 -0.4850 8 14 3.3115 3.9104 -2.9711 9 1 2.6405 5.2209 -2.7776 10 1 4.7380 4.1315 -3.3202 11 1 2.6423 3.1690 -4.0701 12 6 2.3930 2.0257 1.2612 13 1 2.7361 3.0410 1.0625 14 6 3.5166 1.2287 1.9271 15 6 1.1791 2.0705 2.1914 16 7 0.0638 2.7297 1.5074 17 6 -1.1171 2.8839 2.1383 18 8 -1.2348 2.5443 3.3012 19 6 -2.2596 3.4605 1.4242 20 6 -2.2984 3.8002 0.0876 21 6 -3.5732 4.3127 -0.1700 22 17 -4.1518 4.8910 -1.7012 23 6 -4.2782 4.2781 0.9893 24 17 -5.9194 4.8074 1.1896 25 7 -3.4924 3.7563 1.9642 26 6 -3.8871 3.5465 3.3594 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 4.9048 3.6099 -0.6351 33 1 3.1734 0.2134 2.1257 34 1 4.3815 1.1968 1.2643 35 1 3.7951 1.7079 2.8656 36 1 0.8904 1.0546 2.4613 37 1 1.4327 2.6278 3.0931 38 1 0.1755 3.0558 0.6007 39 1 -1.4949 3.6906 -0.6257 40 1 -3.6972 4.4549 3.9312 41 1 -4.9489 3.3042 3.4041 42 1 -3.3087 2.7243 3.7809 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153727897.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:48 Heat of formation + Delta-G solvation = 7.230546 kcal Electronic energy + Delta-G solvation = -27010.441819 eV Core-core repulsion = 23078.518705 eV Total energy + Delta-G solvation = -3931.923114 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.091 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.69814 -40.33043 -38.49432 -37.89523 -37.52438 -35.42934 -33.99276 -33.62262 -32.69182 -30.50734 -29.80510 -27.64661 -26.95320 -25.73166 -23.75518 -23.22339 -21.93725 -21.04337 -20.64375 -19.23707 -18.58486 -17.37625 -17.11255 -17.09384 -16.55287 -16.28517 -15.61808 -15.46621 -15.35435 -15.05721 -14.71623 -14.48555 -14.26023 -14.13491 -13.93026 -13.71490 -13.45668 -13.27790 -13.14060 -12.95459 -12.72650 -12.66740 -12.52574 -12.49472 -12.43810 -12.33252 -12.01434 -11.98480 -11.83538 -11.27009 -11.15925 -11.06048 -10.37448 -10.03125 -9.90675 -9.32653 -8.36449 -7.75999 -5.35721 0.09026 0.30369 0.99320 1.07842 1.53256 1.58325 1.62881 1.74080 2.19369 2.44629 2.58085 3.41060 3.59278 3.67166 3.74631 3.92370 4.25157 4.30614 4.37968 4.51666 4.55457 4.63070 4.65051 4.74216 4.87006 4.93965 5.00447 5.03702 5.07663 5.12984 5.28938 5.38753 5.42148 5.49257 5.60397 5.63634 5.81062 5.82507 5.96479 6.57792 6.63623 7.14958 7.33490 7.97833 8.51328 9.26361 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.011730 B = 0.003826 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.401271 B = 7317.387303 C = 8851.441369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.140 3.860 3 N -0.592 5.592 4 C -0.259 4.259 5 H 0.061 0.939 6 C -0.024 4.024 7 N -0.915 5.915 8 Si 0.949 3.051 9 H -0.285 1.285 10 H -0.302 1.302 11 H -0.275 1.275 12 C 0.179 3.821 13 H 0.079 0.921 14 C -0.132 4.132 15 C 0.117 3.883 16 N -0.682 5.682 17 C 0.585 3.415 18 O -0.580 6.580 19 C -0.026 4.026 20 C -0.117 4.117 21 C -0.109 4.109 22 Cl -0.027 7.027 23 C 0.092 3.908 24 Cl 0.019 6.981 25 N -0.395 5.395 26 C 0.056 3.944 27 H 0.040 0.960 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.030 0.970 32 H 0.248 0.752 33 H 0.041 0.959 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.413 0.587 39 H 0.167 0.833 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.686 1.854 5.033 17.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.015 3.985 3 N -0.314 5.314 4 C -0.389 4.389 5 H 0.079 0.921 6 C -0.222 4.222 7 N -0.559 5.559 8 Si 0.779 3.221 9 H -0.212 1.212 10 H -0.229 1.229 11 H -0.200 1.200 12 C 0.072 3.928 13 H 0.097 0.903 14 C -0.191 4.191 15 C -0.009 4.009 16 N -0.330 5.330 17 C 0.372 3.628 18 O -0.463 6.463 19 C -0.141 4.141 20 C -0.143 4.143 21 C -0.143 4.143 22 Cl 0.002 6.998 23 C -0.052 4.052 24 Cl 0.048 6.952 25 N -0.071 5.071 26 C -0.083 4.083 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.250 0.750 39 H 0.185 0.815 40 H 0.113 0.887 41 H 0.127 0.873 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -16.860 1.701 6.104 18.011 hybrid contribution 0.313 0.818 -1.437 1.683 sum -16.547 2.519 4.667 17.376 Atomic orbital electron populations 1.22259 0.98215 1.00160 1.00865 1.20829 0.92836 0.86295 0.98585 1.43947 1.76338 1.08920 1.02221 1.19214 1.03055 1.21644 0.95016 0.92133 1.25846 0.95184 1.02062 0.99072 1.70017 1.11066 1.39989 1.34806 0.85572 0.75990 0.79075 0.81496 1.21207 1.22924 1.20043 1.20444 0.89557 0.98673 0.84140 0.90274 1.21857 0.99521 0.98646 0.99120 1.22028 0.87202 0.96144 0.95513 1.45618 1.10388 1.57921 1.19105 1.16877 0.82210 0.78349 0.85364 1.90729 1.84371 1.54048 1.17121 1.19946 0.87732 1.13100 0.93308 1.21407 0.97008 1.01755 0.94117 1.19630 0.95088 1.11951 0.87678 1.98338 1.88212 1.87334 1.25949 1.20669 0.88135 1.07673 0.88769 1.98401 1.11557 1.87872 1.97386 1.43884 1.08695 1.44397 1.10094 1.22637 1.03723 1.05550 0.76368 0.94058 0.92846 0.93578 0.93671 0.95167 0.94246 0.93999 0.93530 0.93247 0.92540 0.92320 0.75015 0.81546 0.88715 0.87256 0.87803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.16 9.89 71.98 0.71 -4.45 16 2 C 0.14 5.29 5.67 86.38 0.49 5.78 16 3 N -0.59 -25.22 1.85 -678.03 -1.25 -26.48 16 4 C -0.26 -12.28 9.22 84.03 0.77 -11.50 16 5 H 0.06 2.87 7.83 -2.91 -0.02 2.85 16 6 C -0.02 -1.19 5.17 84.86 0.44 -0.75 16 7 N -0.91 -47.54 10.15 21.65 0.22 -47.32 16 8 Si 0.95 41.26 29.55 68.60 2.03 43.29 16 9 H -0.29 -12.28 7.11 99.48 0.71 -11.58 16 10 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 11 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 12 C 0.18 7.28 1.90 44.99 0.09 7.37 16 13 H 0.08 3.77 5.96 -2.39 -0.01 3.76 16 14 C -0.13 -5.13 9.02 71.98 0.65 -4.48 16 15 C 0.12 4.14 4.35 86.38 0.38 4.51 16 16 N -0.68 -23.18 4.01 -467.19 -1.87 -25.05 16 17 C 0.58 19.27 7.57 86.41 0.65 19.92 16 18 O -0.58 -20.89 14.60 -4.40 -0.06 -20.95 16 19 C -0.03 -0.77 6.89 40.31 0.28 -0.49 16 20 C -0.12 -3.26 10.34 22.58 0.23 -3.03 16 21 C -0.11 -2.84 6.66 22.06 0.15 -2.69 16 22 Cl -0.03 -0.65 29.12 -2.72 -0.08 -0.73 16 23 C 0.09 2.21 7.39 83.52 0.62 2.83 16 24 Cl 0.02 0.36 28.56 -2.72 -0.08 0.28 16 25 N -0.40 -9.87 3.17 -522.92 -1.66 -11.52 16 26 C 0.06 1.09 10.50 127.77 1.34 2.43 16 27 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.05 1.56 5.09 -2.39 -0.01 1.54 16 30 H 0.04 1.62 6.42 -2.39 -0.02 1.60 16 31 H 0.03 1.19 8.09 -2.39 -0.02 1.17 16 32 H 0.25 12.86 8.31 -92.71 -0.77 12.09 16 33 H 0.04 1.48 6.65 -2.39 -0.02 1.46 16 34 H 0.05 2.09 7.41 -2.38 -0.02 2.08 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.06 2.00 7.08 -2.38 -0.02 1.99 16 37 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.41 14.58 6.80 -92.71 -0.63 13.95 16 39 H 0.17 4.59 7.47 -2.91 -0.02 4.57 16 40 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.11 1.53 7.84 -2.39 -0.02 1.51 16 42 H 0.10 2.37 6.09 -2.38 -0.01 2.35 16 Total: -1.00 -53.87 368.67 4.47 -49.40 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 0.43 Total: 23.62 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 6.80 Total: 15.44 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -4.57 Total: -110.37 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.06 Total: -20.95 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.16 Total: -0.44 kcal Total: -53.87 4.47 -49.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153727897.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.631 kcal (2) G-P(sol) polarization free energy of solvation -53.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds