Wall clock time and date at job start Wed Apr 1 2020 03:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.38879 * 110.99611 * 2 1 4 4 C 1.40389 * 120.17086 * 263.89543 * 3 2 1 5 5 C 1.47432 * 120.20959 * 359.97438 * 4 3 2 6 6 O 1.21606 * 119.99924 * 0.29429 * 5 4 3 7 7 N 1.34778 * 119.99911 * 180.29689 * 5 4 3 8 8 C 1.46503 * 119.99734 * 180.02562 * 7 5 4 9 9 H 1.09005 * 109.47325 * 34.99778 * 8 7 5 10 10 C 1.50701 * 109.46974 * 154.99519 * 8 7 5 11 11 H 1.07997 * 120.00398 * 0.02562 * 10 8 7 12 12 C 1.37884 * 119.99812 * 179.97438 * 10 8 7 13 13 N 1.31518 * 119.99912 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 119.99863 * 180.02562 * 12 10 8 15 15 H 1.48509 * 109.46963 * 90.00040 * 14 12 10 16 16 H 1.48491 * 109.47295 * 210.00039 * 14 12 10 17 17 H 1.48500 * 109.47369 * 330.00602 * 14 12 10 18 18 C 1.52998 * 109.47135 * 274.99729 * 8 7 5 19 19 F 1.39892 * 109.47069 * 60.00052 * 18 8 7 20 20 F 1.39896 * 109.47264 * 180.02562 * 18 8 7 21 21 F 1.39904 * 109.46845 * 299.99998 * 18 8 7 22 22 C 1.39701 * 119.58170 * 180.27529 * 4 3 2 23 23 C 1.37788 * 119.92588 * 359.72525 * 22 4 3 24 24 C 1.38563 * 120.35634 * 0.02562 * 23 22 4 25 25 C 1.38006 * 120.41931 * 0.02562 * 24 23 22 26 26 N 1.48021 * 119.96717 * 179.97438 * 25 24 23 27 27 O 1.21804 * 119.99870 * 354.53980 * 26 25 24 28 28 O 1.21801 * 120.00124 * 174.27184 * 26 25 24 29 29 H 1.08999 * 109.46942 * 65.96021 * 1 2 3 30 30 H 1.09003 * 109.46714 * 185.96010 * 1 2 3 31 31 H 1.09001 * 109.47303 * 305.95693 * 1 2 3 32 32 H 1.00902 * 110.99645 * 123.94606 * 2 1 3 33 33 H 0.96999 * 120.00272 * 359.97438 * 7 5 4 34 34 H 0.96995 * 119.99275 * 180.02562 * 13 12 10 35 35 H 1.08000 * 120.03248 * 179.70323 * 22 4 3 36 36 H 1.07998 * 119.82174 * 179.97438 * 23 22 4 37 37 H 1.07998 * 119.79036 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9667 1.2966 0.0000 4 6 2.3400 1.9091 -1.2068 5 6 2.2067 1.1797 -2.4812 6 8 1.7672 0.0459 -2.4897 7 7 2.5719 1.7696 -3.6366 8 6 2.4389 1.0451 -4.9030 9 1 1.5523 0.4120 -4.8680 10 6 2.3074 2.0315 -6.0347 11 1 2.3219 3.0920 -5.8311 12 6 2.1696 1.5800 -7.3302 13 7 2.1525 0.2886 -7.5781 14 14 2.0073 2.8027 -8.7330 15 1 3.3561 3.1374 -9.2565 16 1 1.1893 2.2049 -9.8186 17 1 1.3476 4.0381 -8.2392 18 6 3.6780 0.1756 -5.1256 19 9 3.8000 -0.7400 -4.0751 20 9 3.5513 -0.5158 -6.3352 21 9 4.8159 0.9883 -5.1706 22 6 2.8445 3.2117 -1.1919 23 6 2.9671 3.8877 0.0024 24 6 2.5929 3.2824 1.1914 25 6 2.0938 1.9958 1.1936 26 7 1.6977 1.3586 2.4695 27 8 1.9041 1.9298 3.5253 28 8 1.1609 0.2652 2.4634 29 1 -0.3633 0.4186 -0.9385 30 1 -0.3633 -1.0222 0.1067 31 1 -0.3634 0.6034 0.8319 32 1 1.8306 -0.5260 0.7815 33 1 2.9222 2.6742 -3.6299 34 1 2.0559 -0.0289 -8.4896 35 1 3.1384 3.6881 -2.1155 36 1 3.3577 4.8946 0.0120 37 1 2.6933 3.8206 2.1223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156052456.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:47 Heat of formation + Delta-G solvation = -139.949532 kcal Electronic energy + Delta-G solvation = -31734.586852 eV Core-core repulsion = 26680.315381 eV Total energy + Delta-G solvation = -5054.271471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.093 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.40226 -48.03734 -47.71488 -43.53623 -41.49249 -39.63113 -38.16442 -36.89017 -36.25702 -34.52199 -33.25155 -31.48705 -30.11399 -27.75265 -26.69673 -26.51638 -25.00125 -23.63899 -22.87281 -21.74394 -20.50236 -19.89180 -19.15569 -18.93699 -18.84718 -18.62917 -18.37637 -18.07920 -17.45798 -16.99325 -16.77064 -16.36885 -15.86986 -15.64837 -15.45648 -15.00133 -14.94523 -14.54049 -14.49912 -14.43499 -14.28487 -14.03964 -13.91182 -13.74542 -13.50051 -13.42386 -13.05104 -13.01374 -12.77389 -12.72162 -12.64409 -12.39669 -12.23263 -12.19276 -11.55601 -10.98577 -10.78702 -10.67894 -10.41922 -10.04601 -9.61013 -8.19948 -6.50958 -1.34906 -0.52496 0.13260 0.18579 1.48784 1.49212 1.60437 1.66217 2.05810 2.35951 2.42840 2.59493 2.75820 2.96266 3.18456 3.49868 3.60687 3.78180 3.80657 3.87989 3.94000 4.12600 4.25629 4.31852 4.38656 4.57024 4.77457 4.83396 4.89526 4.95132 5.05050 5.29624 5.38985 5.54938 5.65819 5.75593 6.07346 6.38172 6.53496 6.71087 7.18321 7.35081 8.72578 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.019125 B = 0.003309 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.714566 B = 8460.779341 C = 8901.688864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.648 5.648 3 C 0.211 3.789 4 C -0.143 4.143 5 C 0.542 3.458 6 O -0.529 6.529 7 N -0.702 5.702 8 C 0.256 3.744 9 H 0.048 0.952 10 C -0.559 4.559 11 H 0.097 0.903 12 C 0.015 3.985 13 N -0.875 5.875 14 Si 0.982 3.018 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.253 1.253 18 C 0.412 3.588 19 F -0.220 7.220 20 F -0.152 7.152 21 F -0.203 7.203 22 C -0.014 4.014 23 C -0.108 4.108 24 C -0.012 4.012 25 C -0.115 4.115 26 N 0.038 4.962 27 O -0.144 6.144 28 O -0.208 6.208 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.031 0.969 32 H 0.364 0.636 33 H 0.412 0.588 34 H 0.267 0.733 35 H 0.176 0.824 36 H 0.206 0.794 37 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.490 11.644 13.830 18.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.281 5.281 3 C 0.109 3.891 4 C -0.148 4.148 5 C 0.329 3.671 6 O -0.405 6.405 7 N -0.355 5.355 8 C 0.149 3.851 9 H 0.066 0.934 10 C -0.596 4.596 11 H 0.115 0.885 12 C -0.191 4.191 13 N -0.509 5.509 14 Si 0.806 3.194 15 H -0.200 1.200 16 H -0.213 1.213 17 H -0.177 1.177 18 C 0.356 3.644 19 F -0.202 7.202 20 F -0.133 7.133 21 F -0.185 7.185 22 C -0.033 4.033 23 C -0.127 4.127 24 C -0.032 4.032 25 C -0.202 4.202 26 N 0.551 4.449 27 O -0.366 6.366 28 O -0.409 6.409 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.050 0.950 32 H 0.190 0.810 33 H 0.250 0.750 34 H 0.077 0.923 35 H 0.194 0.806 36 H 0.223 0.777 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 1.320 10.688 12.379 16.408 hybrid contribution 0.078 -0.231 0.284 0.375 sum 1.398 10.457 12.663 16.482 Atomic orbital electron populations 1.21957 0.83100 1.03491 0.99669 1.57393 1.10252 1.09143 1.51292 1.18658 0.91205 0.89419 0.89801 1.19944 1.06619 0.96841 0.91406 1.18333 0.78604 0.86301 0.83893 1.90853 1.44283 1.18675 1.86711 1.45789 1.65587 1.18951 1.05142 1.19299 0.89456 0.92543 0.83777 0.93426 1.21232 1.54677 0.93648 0.90014 0.88470 1.25997 0.93644 0.97401 1.02009 1.70542 1.44232 1.14414 1.21721 0.85177 0.78241 0.78654 0.77373 1.20034 1.21255 1.17706 1.23363 0.87359 0.79869 0.73813 1.93072 1.96790 1.70427 1.59884 1.93376 1.95295 1.80843 1.43812 1.92984 1.55514 1.73583 1.96373 1.22257 0.88740 0.90313 1.01972 1.21661 0.99663 1.02921 0.88422 1.21647 0.89098 0.89479 1.02962 1.22002 1.17244 0.97963 0.82972 1.43666 0.97830 1.00318 1.03041 1.94493 1.57684 1.64650 1.19794 1.94467 1.44400 1.08043 1.94020 0.92862 0.89319 0.95049 0.80984 0.75006 0.92275 0.80636 0.77725 0.79809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.83 9.45 127.69 1.21 3.04 16 2 N -0.65 -20.46 4.59 -359.25 -1.65 -22.11 16 3 C 0.21 5.85 5.26 38.71 0.20 6.05 16 4 C -0.14 -3.87 5.89 -19.98 -0.12 -3.99 16 5 C 0.54 20.20 7.29 86.67 0.63 20.83 16 6 O -0.53 -24.32 13.18 -4.05 -0.05 -24.37 16 7 N -0.70 -25.92 4.94 -449.35 -2.22 -28.14 16 8 C 0.26 12.20 2.21 44.24 0.10 12.30 16 9 H 0.05 2.65 7.58 -2.38 -0.02 2.63 16 10 C -0.56 -26.51 8.47 25.60 0.22 -26.29 16 11 H 0.10 4.11 7.74 -2.91 -0.02 4.08 16 12 C 0.01 0.74 5.20 84.66 0.44 1.18 16 13 N -0.88 -47.32 9.50 21.45 0.20 -47.11 16 14 Si 0.98 38.68 29.54 68.60 2.03 40.70 16 15 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 16 H -0.29 -11.42 7.11 99.48 0.71 -10.72 16 17 H -0.25 -9.21 7.11 99.48 0.71 -8.51 16 18 C 0.41 20.72 2.81 71.98 0.20 20.92 16 19 F -0.22 -11.21 15.67 44.97 0.70 -10.51 16 20 F -0.15 -8.43 12.91 44.97 0.58 -7.85 16 21 F -0.20 -9.49 16.94 44.97 0.76 -8.73 16 22 C -0.01 -0.22 9.53 22.52 0.21 0.00 16 23 C -0.11 -1.01 10.02 22.24 0.22 -0.79 16 24 C -0.01 -0.17 9.54 22.29 0.21 0.05 16 25 C -0.11 -2.57 6.74 36.48 0.25 -2.33 16 26 N 0.04 0.97 4.45 -46.21 -0.21 0.76 16 27 O -0.14 -3.52 18.45 18.88 0.35 -3.17 16 28 O -0.21 -5.88 14.03 18.89 0.26 -5.62 16 29 H 0.05 1.69 7.97 -2.39 -0.02 1.67 16 30 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.03 0.83 6.79 -2.39 -0.02 0.82 16 32 H 0.36 11.00 6.51 -89.69 -0.58 10.42 16 33 H 0.41 11.79 6.57 -92.71 -0.61 11.18 16 34 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 35 H 0.18 1.89 6.40 -2.91 -0.02 1.87 16 36 H 0.21 -0.05 8.06 -2.91 -0.02 -0.07 16 37 H 0.18 1.45 7.60 -2.91 -0.02 1.43 16 Total: -1.00 -69.53 329.59 4.54 -64.99 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.00 Total: 20.18 kcal Atomic # 6 Polarization: 27.19 SS G_CDS: 3.78 Total: 30.97 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -3.87 Total: -96.60 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: 0.56 Total: -33.16 kcal Atomic # 9 Polarization: -29.14 SS G_CDS: 2.05 Total: -27.09 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.70 kcal Total: -69.53 4.54 -64.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156052456.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.957 kcal (2) G-P(sol) polarization free energy of solvation -69.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds