Wall clock time and date at job start Wed Apr 1 2020 04:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 S 1.65604 * 119.99589 * 2 1 4 4 O 1.42104 * 106.39962 * 316.95584 * 3 2 1 5 5 O 1.42097 * 106.40127 * 184.04112 * 3 2 1 6 6 C 1.76195 * 107.21968 * 70.49952 * 3 2 1 7 7 C 1.37938 * 120.07927 * 346.89300 * 6 3 2 8 8 C 1.38380 * 120.15318 * 180.25799 * 7 6 3 9 9 C 1.38424 * 120.30036 * 359.74189 * 8 7 6 10 10 C 1.37899 * 120.15560 * 359.97438 * 9 8 7 11 11 C 1.39654 * 120.07693 * 166.63869 * 6 3 2 12 12 C 1.47840 * 120.14592 * 0.02562 * 11 6 3 13 13 C 1.39163 * 120.21835 * 255.60409 * 12 11 6 14 14 C 1.37958 * 120.16438 * 180.28239 * 13 12 11 15 15 C 1.39463 * 120.61618 * 359.44222 * 14 13 12 16 16 O 1.35877 * 119.77995 * 180.29793 * 15 14 13 17 17 C 1.42901 * 116.99775 * 0.02562 * 16 15 14 18 18 C 1.37927 * 120.44075 * 0.28558 * 15 14 13 19 19 C 1.40644 * 119.81557 * 359.97438 * 18 15 14 20 20 C 1.40892 * 120.30217 * 180.02562 * 19 18 15 21 21 H 1.08000 * 120.00247 * 207.15384 * 20 19 18 22 22 C 1.40056 * 119.99658 * 27.15618 * 20 19 18 23 23 N 1.30777 * 120.00186 * 9.40068 * 22 20 19 24 24 Si 1.86799 * 119.99803 * 189.40495 * 22 20 19 25 25 H 1.48504 * 109.47133 * 359.97438 * 24 22 20 26 26 H 1.48507 * 109.47231 * 119.99530 * 24 22 20 27 27 H 1.48500 * 109.47382 * 239.99699 * 24 22 20 28 28 H 1.08999 * 109.47177 * 185.58361 * 1 2 3 29 29 H 1.09000 * 109.47898 * 305.58388 * 1 2 3 30 30 H 1.09007 * 109.47379 * 65.58744 * 1 2 3 31 31 H 0.96996 * 120.00481 * 179.97438 * 2 1 3 32 32 H 1.08004 * 119.92459 * 359.97438 * 7 6 3 33 33 H 1.07991 * 119.84842 * 179.76670 * 8 7 6 34 34 H 1.08004 * 119.91901 * 180.02562 * 9 8 7 35 35 H 1.07996 * 120.07477 * 180.02562 * 10 9 8 36 36 H 1.07999 * 119.92439 * 0.02562 * 13 12 11 37 37 H 1.07995 * 119.68677 * 179.72604 * 14 13 12 38 38 H 1.08998 * 109.47199 * 299.99697 * 17 16 15 39 39 H 1.09009 * 109.47220 * 59.99690 * 17 16 15 40 40 H 1.09001 * 109.46770 * 179.97438 * 17 16 15 41 41 H 1.08001 * 120.09272 * 180.02562 * 18 15 14 42 42 H 0.96997 * 119.99656 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.6306 2.2798 -0.9305 5 8 3.6711 1.1019 -0.0961 6 6 2.0671 2.1668 1.5864 7 6 1.1029 1.6776 2.4430 8 6 0.9207 2.2552 3.6872 9 6 1.7070 3.3234 4.0832 10 6 2.6786 3.8188 3.2392 11 6 2.8675 3.2408 1.9817 12 6 3.9063 3.7673 1.0710 13 6 5.2485 3.4773 1.2973 14 6 6.2174 3.9739 0.4501 15 6 5.8665 4.7604 -0.6468 16 8 6.8343 5.2357 -1.4736 17 6 8.1844 4.8897 -1.1583 18 6 4.5435 5.0588 -0.8980 19 6 3.5411 4.5666 -0.0431 20 6 2.1864 4.8646 -0.2904 21 1 1.4810 4.8894 0.5270 22 6 1.7547 5.1286 -1.5963 23 7 2.5596 4.9207 -2.6058 24 14 0.0290 5.7780 -1.8961 25 1 -0.6768 5.9257 -0.5979 26 1 0.1073 7.0988 -2.5705 27 1 -0.7156 4.8253 -2.7583 28 1 -0.3633 -1.0228 0.1000 29 1 -0.3635 0.5980 0.8357 30 1 -0.3634 0.4248 -0.9358 31 1 1.9500 -0.8400 0.0004 32 1 0.4856 0.8447 2.1400 33 1 0.1618 1.8707 4.3523 34 1 1.5598 3.7693 5.0558 35 1 3.2916 4.6519 3.5497 36 1 5.5327 2.8653 2.1406 37 1 7.2570 3.7477 0.6356 38 1 8.4344 5.2679 -0.1671 39 1 8.2942 3.8052 -1.1717 40 1 8.8544 5.3316 -1.8958 41 1 4.2780 5.6681 -1.7493 42 1 2.2606 5.1039 -3.5102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245187260.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:24 Heat of formation + Delta-G solvation = -47.428050 kcal Electronic energy + Delta-G solvation = -29651.521170 eV Core-core repulsion = 25689.411687 eV Total energy + Delta-G solvation = -3962.109484 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.03625 -38.30785 -36.29193 -36.14539 -34.87455 -34.66019 -33.44354 -31.35866 -30.73561 -29.59805 -28.15987 -26.19395 -25.79489 -25.09082 -22.61397 -22.46215 -20.89823 -19.95554 -18.84520 -17.64384 -17.34261 -16.72962 -16.04042 -15.89333 -15.49437 -15.08753 -14.74616 -14.58849 -14.50710 -14.42064 -13.99288 -13.91603 -13.09977 -12.91345 -12.85550 -12.52501 -12.38520 -12.12794 -11.94602 -11.62147 -11.40113 -11.25961 -11.16198 -11.05679 -10.97795 -10.95021 -10.87657 -10.64304 -10.38949 -10.08767 -9.75921 -9.71918 -9.54784 -9.29970 -9.02107 -8.80538 -8.21308 -7.37064 -6.86095 -6.54852 -4.32422 1.18111 1.42356 1.80143 2.82277 3.00566 3.17585 3.22397 3.31699 3.70396 4.04323 4.07559 4.39735 4.54012 4.77339 4.99744 5.14436 5.29432 5.34881 5.46545 5.51708 5.63513 5.72642 5.76064 5.82112 5.82715 5.92160 5.98723 6.09041 6.18348 6.26086 6.43349 6.44916 6.59605 6.76224 6.88841 6.95176 7.14922 7.22372 7.32306 7.37598 7.50634 7.75847 7.82769 8.04451 8.12160 8.43916 8.82960 8.94688 8.97862 10.31119 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.009290 B = 0.006266 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.287844 B = 4467.562375 C = 5403.107902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.137 6.137 3 S 2.687 3.313 4 O -0.904 6.904 5 O -0.949 6.949 6 C -0.657 4.657 7 C -0.053 4.053 8 C -0.164 4.164 9 C -0.077 4.077 10 C -0.140 4.140 11 C 0.142 3.858 12 C -0.276 4.276 13 C -0.006 4.006 14 C -0.320 4.320 15 C 0.138 3.862 16 O -0.329 6.329 17 C 0.036 3.964 18 C -0.193 4.193 19 C 0.151 3.849 20 C -0.422 4.422 21 H 0.078 0.922 22 C 0.100 3.900 23 N -0.769 5.769 24 Si 0.908 3.092 25 H -0.261 1.261 26 H -0.275 1.275 27 H -0.270 1.270 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.411 0.589 32 H 0.128 0.872 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.126 0.874 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.082 0.918 41 H 0.137 0.863 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.492 -6.944 6.987 10.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.895 5.895 3 S 2.775 3.225 4 O -0.894 6.894 5 O -0.939 6.939 6 C -0.743 4.743 7 C -0.072 4.072 8 C -0.183 4.183 9 C -0.095 4.095 10 C -0.158 4.158 11 C 0.141 3.859 12 C -0.278 4.278 13 C -0.024 4.024 14 C -0.340 4.340 15 C 0.094 3.906 16 O -0.243 6.243 17 C -0.060 4.060 18 C -0.213 4.213 19 C 0.148 3.852 20 C -0.450 4.450 21 H 0.096 0.904 22 C -0.122 4.122 23 N -0.392 5.392 24 Si 0.733 3.267 25 H -0.185 1.185 26 H -0.201 1.201 27 H -0.195 1.195 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.243 0.757 32 H 0.145 0.855 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.144 0.856 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.100 0.900 41 H 0.154 0.846 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.180 -6.309 5.869 9.185 hybrid contribution -0.671 -0.367 0.878 1.164 sum -3.851 -6.676 6.748 10.243 Atomic orbital electron populations 1.21569 0.79523 1.03110 1.02423 1.55882 1.15658 1.25478 1.92528 1.02573 0.73511 0.72056 0.74392 1.93714 1.75207 1.63052 1.57389 1.93579 1.30837 1.83264 1.86199 1.31143 1.07473 1.11424 1.24224 1.20908 0.94829 0.97763 0.93687 1.21040 1.01472 0.98736 0.97013 1.21221 0.94401 0.95184 0.98718 1.21545 0.99224 1.00631 0.94445 1.18259 0.88928 0.87309 0.91452 1.18607 0.91566 1.13371 1.04254 1.20099 0.91395 0.94841 0.96096 1.20299 0.97817 1.13734 1.02134 1.19044 0.88310 0.94036 0.89186 1.86002 1.14651 1.72109 1.51556 1.22761 0.82543 1.00113 1.00545 1.20664 0.87443 1.08048 1.05189 1.17190 0.93064 0.87105 0.87883 1.19448 0.93286 1.38642 0.93593 0.90359 1.25724 0.99110 0.91733 0.95634 1.69751 1.36659 1.32624 1.00197 0.86264 0.82492 0.78429 0.79506 1.18487 1.20094 1.19534 0.90617 0.91978 0.91423 0.75693 0.85489 0.86384 0.86314 0.85593 0.89072 0.88507 0.93740 0.93574 0.89980 0.84593 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 10.46 59.85 0.63 1.55 16 2 N -1.14 -16.50 5.74 -16.63 -0.10 -16.60 16 3 S 2.69 56.22 4.72 -107.50 -0.51 55.71 16 4 O -0.90 -21.92 14.38 -57.17 -0.82 -22.74 16 5 O -0.95 -22.82 16.94 -57.17 -0.97 -23.79 16 6 C -0.66 -13.20 5.69 -39.16 -0.22 -13.42 16 7 C -0.05 -0.86 9.15 -39.64 -0.36 -1.22 16 8 C -0.16 -2.39 10.04 -39.46 -0.40 -2.79 16 9 C -0.08 -1.18 10.03 -39.64 -0.40 -1.58 16 10 C -0.14 -2.60 9.79 -39.17 -0.38 -2.98 16 11 C 0.14 3.10 4.11 -104.90 -0.43 2.67 16 12 C -0.28 -6.84 3.65 -104.22 -0.38 -7.22 16 13 C -0.01 -0.14 9.62 -39.34 -0.38 -0.52 16 14 C -0.32 -7.63 9.02 -39.23 -0.35 -7.98 16 15 C 0.14 3.53 6.67 -39.24 -0.26 3.27 16 16 O -0.33 -7.60 10.48 -19.35 -0.20 -7.80 16 17 C 0.04 0.62 9.80 101.05 0.99 1.61 16 18 C -0.19 -5.34 8.59 -38.79 -0.33 -5.67 16 19 C 0.15 4.09 5.15 -106.58 -0.55 3.54 16 20 C -0.42 -11.25 6.21 -37.90 -0.24 -11.49 16 21 H 0.08 2.05 7.27 -52.49 -0.38 1.67 16 22 C 0.10 2.59 4.46 -17.32 -0.08 2.51 16 23 N -0.77 -20.65 10.66 55.55 0.59 -20.06 16 24 Si 0.91 19.86 29.57 -169.99 -5.03 14.84 16 25 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 26 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 27 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.66 5.39 -51.93 -0.28 0.38 16 30 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 31 H 0.41 4.90 8.96 -34.47 -0.31 4.59 16 32 H 0.13 1.60 4.65 -52.48 -0.24 1.35 16 33 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 34 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 35 H 0.13 2.19 8.06 -52.49 -0.42 1.76 16 36 H 0.09 1.95 8.06 -52.49 -0.42 1.53 16 37 H 0.10 2.02 6.25 -52.49 -0.33 1.70 16 38 H 0.04 0.70 7.64 -51.93 -0.40 0.31 16 39 H 0.05 0.77 7.65 -51.92 -0.40 0.37 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.14 3.89 6.03 -52.49 -0.32 3.57 16 42 H 0.28 6.87 8.29 -40.82 -0.34 6.54 16 LS Contribution 355.05 15.07 5.35 5.35 Total: -1.00 -34.35 355.05 -9.57 -43.92 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -4.75 Total: 10.88 kcal Atomic # 6 Polarization: -36.57 SS G_CDS: -3.15 Total: -39.71 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.50 Total: -36.66 kcal Atomic # 8 Polarization: -52.34 SS G_CDS: -1.99 Total: -54.33 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.03 Total: 14.84 kcal Atomic # 16 Polarization: 56.22 SS G_CDS: -0.51 Total: 55.71 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.35 -9.57 -43.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245187260.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.507 kcal (2) G-P(sol) polarization free energy of solvation -34.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds