Wall clock time and date at job start Wed Apr 1 2020 04:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 S 1.65604 * 119.99589 * 2 1 4 4 O 1.42104 * 106.39962 * 316.95584 * 3 2 1 5 5 O 1.42097 * 106.40127 * 184.04112 * 3 2 1 6 6 C 1.76195 * 107.21968 * 70.49952 * 3 2 1 7 7 C 1.37938 * 120.07927 * 346.89300 * 6 3 2 8 8 C 1.38380 * 120.15318 * 180.25799 * 7 6 3 9 9 C 1.38424 * 120.30036 * 359.74189 * 8 7 6 10 10 C 1.37899 * 120.15560 * 359.97438 * 9 8 7 11 11 C 1.39654 * 120.07693 * 166.63869 * 6 3 2 12 12 C 1.47840 * 120.14592 * 0.02562 * 11 6 3 13 13 C 1.39163 * 120.21835 * 255.60409 * 12 11 6 14 14 C 1.37958 * 120.16438 * 180.28239 * 13 12 11 15 15 C 1.39463 * 120.61618 * 359.44222 * 14 13 12 16 16 O 1.35877 * 119.77995 * 180.29793 * 15 14 13 17 17 C 1.42901 * 116.99775 * 0.02562 * 16 15 14 18 18 C 1.37927 * 120.44075 * 0.28558 * 15 14 13 19 19 C 1.40644 * 119.81557 * 359.97438 * 18 15 14 20 20 C 1.40892 * 120.30217 * 180.02562 * 19 18 15 21 21 H 1.08000 * 120.00247 * 207.15384 * 20 19 18 22 22 C 1.40056 * 119.99658 * 27.15618 * 20 19 18 23 23 N 1.30777 * 120.00186 * 9.40068 * 22 20 19 24 24 Si 1.86799 * 119.99803 * 189.40495 * 22 20 19 25 25 H 1.48504 * 109.47133 * 359.97438 * 24 22 20 26 26 H 1.48507 * 109.47231 * 119.99530 * 24 22 20 27 27 H 1.48500 * 109.47382 * 239.99699 * 24 22 20 28 28 H 1.08999 * 109.47177 * 185.58361 * 1 2 3 29 29 H 1.09000 * 109.47898 * 305.58388 * 1 2 3 30 30 H 1.09007 * 109.47379 * 65.58744 * 1 2 3 31 31 H 0.96996 * 120.00481 * 179.97438 * 2 1 3 32 32 H 1.08004 * 119.92459 * 359.97438 * 7 6 3 33 33 H 1.07991 * 119.84842 * 179.76670 * 8 7 6 34 34 H 1.08004 * 119.91901 * 180.02562 * 9 8 7 35 35 H 1.07996 * 120.07477 * 180.02562 * 10 9 8 36 36 H 1.07999 * 119.92439 * 0.02562 * 13 12 11 37 37 H 1.07995 * 119.68677 * 179.72604 * 14 13 12 38 38 H 1.08998 * 109.47199 * 299.99697 * 17 16 15 39 39 H 1.09009 * 109.47220 * 59.99690 * 17 16 15 40 40 H 1.09001 * 109.46770 * 179.97438 * 17 16 15 41 41 H 1.08001 * 120.09272 * 180.02562 * 18 15 14 42 42 H 0.96997 * 119.99656 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.6306 2.2798 -0.9305 5 8 3.6711 1.1019 -0.0961 6 6 2.0671 2.1668 1.5864 7 6 1.1029 1.6776 2.4430 8 6 0.9207 2.2552 3.6872 9 6 1.7070 3.3234 4.0832 10 6 2.6786 3.8188 3.2392 11 6 2.8675 3.2408 1.9817 12 6 3.9063 3.7673 1.0710 13 6 5.2485 3.4773 1.2973 14 6 6.2174 3.9739 0.4501 15 6 5.8665 4.7604 -0.6468 16 8 6.8343 5.2357 -1.4736 17 6 8.1844 4.8897 -1.1583 18 6 4.5435 5.0588 -0.8980 19 6 3.5411 4.5666 -0.0431 20 6 2.1864 4.8646 -0.2904 21 1 1.4810 4.8894 0.5270 22 6 1.7547 5.1286 -1.5963 23 7 2.5596 4.9207 -2.6058 24 14 0.0290 5.7780 -1.8961 25 1 -0.6768 5.9257 -0.5979 26 1 0.1073 7.0988 -2.5705 27 1 -0.7156 4.8253 -2.7583 28 1 -0.3633 -1.0228 0.1000 29 1 -0.3635 0.5980 0.8357 30 1 -0.3634 0.4248 -0.9358 31 1 1.9500 -0.8400 0.0004 32 1 0.4856 0.8447 2.1400 33 1 0.1618 1.8707 4.3523 34 1 1.5598 3.7693 5.0558 35 1 3.2916 4.6519 3.5497 36 1 5.5327 2.8653 2.1406 37 1 7.2570 3.7477 0.6356 38 1 8.4344 5.2679 -0.1671 39 1 8.2942 3.8052 -1.1717 40 1 8.8544 5.3316 -1.8958 41 1 4.2780 5.6681 -1.7493 42 1 2.2606 5.1039 -3.5102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245187260.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:23 Heat of formation + Delta-G solvation = -72.429144 kcal Electronic energy + Delta-G solvation = -29652.605299 eV Core-core repulsion = 25689.411687 eV Total energy + Delta-G solvation = -3963.193613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.69058 -39.85349 -37.99512 -37.86749 -36.47802 -35.95342 -35.34163 -32.88870 -32.06184 -31.51118 -29.79926 -27.76610 -26.96048 -26.83521 -24.09741 -23.86088 -22.77333 -21.64214 -20.30020 -19.50477 -18.74486 -18.20554 -17.93375 -17.27384 -16.92479 -16.86125 -16.38856 -16.31636 -15.91715 -15.66019 -15.46615 -15.37566 -14.85381 -14.58357 -14.27254 -14.05648 -13.70564 -13.51755 -13.35612 -13.32428 -13.06325 -12.88044 -12.79479 -12.70253 -12.66589 -12.65899 -12.42176 -12.24325 -11.97712 -11.77029 -11.50478 -11.40062 -11.29475 -10.92495 -10.47351 -10.13146 -9.60863 -9.32931 -8.74820 -8.44304 -6.30021 -0.34657 0.06746 0.45947 0.96601 1.09212 1.36974 1.50654 1.53478 2.26872 2.34884 2.70544 2.74197 2.86929 3.01457 3.66210 3.87084 3.97042 4.01969 4.20176 4.20391 4.30049 4.44866 4.48919 4.52062 4.52559 4.59067 4.63845 4.72635 4.90206 4.94892 4.99024 5.06145 5.12768 5.19477 5.27439 5.37173 5.48506 5.57480 5.58370 5.87359 5.91394 6.06859 6.14567 6.16405 6.18144 6.50003 6.92714 6.99555 7.06050 8.43376 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.009290 B = 0.006266 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.287844 B = 4467.562375 C = 5403.107902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -1.121 6.121 3 S 2.689 3.311 4 O -0.951 6.951 5 O -0.998 6.998 6 C -0.672 4.672 7 C -0.054 4.054 8 C -0.150 4.150 9 C -0.066 4.066 10 C -0.155 4.155 11 C 0.097 3.903 12 C -0.270 4.270 13 C -0.021 4.021 14 C -0.325 4.325 15 C 0.132 3.868 16 O -0.350 6.350 17 C 0.026 3.974 18 C -0.235 4.235 19 C 0.128 3.872 20 C -0.436 4.436 21 H 0.073 0.927 22 C 0.059 3.941 23 N -0.807 5.807 24 Si 0.965 3.035 25 H -0.252 1.252 26 H -0.263 1.263 27 H -0.268 1.268 28 H 0.123 0.877 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.425 0.575 32 H 0.163 0.837 33 H 0.169 0.831 34 H 0.162 0.838 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.126 0.874 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.478 -8.498 9.982 14.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.884 5.884 3 S 2.779 3.221 4 O -0.940 6.940 5 O -0.988 6.988 6 C -0.761 4.761 7 C -0.072 4.072 8 C -0.168 4.168 9 C -0.084 4.084 10 C -0.174 4.174 11 C 0.095 3.905 12 C -0.272 4.272 13 C -0.040 4.040 14 C -0.344 4.344 15 C 0.088 3.912 16 O -0.265 6.265 17 C -0.068 4.068 18 C -0.255 4.255 19 C 0.125 3.875 20 C -0.464 4.464 21 H 0.091 0.909 22 C -0.158 4.158 23 N -0.432 5.432 24 Si 0.786 3.214 25 H -0.175 1.175 26 H -0.188 1.188 27 H -0.193 1.193 28 H 0.141 0.859 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.260 0.740 32 H 0.180 0.820 33 H 0.186 0.814 34 H 0.179 0.821 35 H 0.144 0.856 36 H 0.131 0.869 37 H 0.144 0.856 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.136 0.864 41 H 0.131 0.869 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.134 -7.878 8.846 12.910 hybrid contribution -0.008 -0.015 0.097 0.098 sum -5.142 -7.893 8.943 12.989 Atomic orbital electron populations 1.21938 0.77110 1.06336 1.02415 1.55318 1.17007 1.23866 1.92186 1.01904 0.72654 0.72790 0.74712 1.93654 1.75635 1.65148 1.59583 1.93499 1.33980 1.84144 1.87147 1.30890 1.09154 1.11892 1.24160 1.21419 0.93645 0.98413 0.93741 1.21658 1.01253 0.97290 0.96620 1.21709 0.92392 0.94699 0.99583 1.21649 1.00777 1.01062 0.93909 1.18290 0.89997 0.89461 0.92707 1.18955 0.92989 1.11630 1.03648 1.20500 0.91537 0.95068 0.96857 1.20630 0.99417 1.12995 1.01385 1.19156 0.88377 0.93954 0.89750 1.85962 1.16716 1.72211 1.51625 1.23154 0.80015 1.00907 1.02761 1.20674 0.89132 1.09906 1.05791 1.17507 0.93366 0.87738 0.88903 1.19456 0.93166 1.39935 0.93857 0.90859 1.26526 1.02699 0.91470 0.95144 1.69848 1.38549 1.34144 1.00623 0.85431 0.77993 0.78245 0.79751 1.17491 1.18753 1.19327 0.85872 0.90730 0.92675 0.74007 0.81950 0.81389 0.82087 0.85564 0.86895 0.85646 0.92227 0.93180 0.86374 0.86941 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.35 10.46 127.77 1.34 2.69 16 2 N -1.12 -31.01 5.74 -206.54 -1.18 -32.19 16 3 S 2.69 114.81 4.72 -56.49 -0.27 114.55 16 4 O -0.95 -48.10 14.38 -128.00 -1.84 -49.94 16 5 O -1.00 -50.10 16.94 -128.00 -2.17 -52.27 16 6 C -0.67 -26.56 5.69 22.54 0.13 -26.44 16 7 C -0.05 -1.54 9.15 22.23 0.20 -1.34 16 8 C -0.15 -3.57 10.04 22.35 0.22 -3.34 16 9 C -0.07 -1.74 10.03 22.23 0.22 -1.52 16 10 C -0.16 -5.57 9.79 22.54 0.22 -5.34 16 11 C 0.10 4.26 4.11 -20.05 -0.08 4.18 16 12 C -0.27 -13.91 3.65 -19.61 -0.07 -13.98 16 13 C -0.02 -1.05 9.62 22.43 0.22 -0.83 16 14 C -0.32 -15.85 9.02 22.50 0.20 -15.65 16 15 C 0.13 7.08 6.67 22.49 0.15 7.23 16 16 O -0.35 -16.76 10.48 -92.16 -0.97 -17.73 16 17 C 0.03 0.88 9.80 113.37 1.11 1.99 16 18 C -0.23 -13.89 8.59 22.78 0.20 -13.70 16 19 C 0.13 7.35 5.15 -21.14 -0.11 7.24 16 20 C -0.44 -24.47 6.21 23.36 0.15 -24.32 16 21 H 0.07 4.02 7.27 -2.91 -0.02 4.00 16 22 C 0.06 3.23 4.46 85.29 0.38 3.61 16 23 N -0.81 -46.26 10.66 21.85 0.23 -46.03 16 24 Si 0.96 41.80 29.57 68.60 2.03 43.83 16 25 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 26 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 28 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.31 5.39 -2.39 -0.01 1.30 16 30 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.42 9.46 8.96 -96.75 -0.87 8.60 16 32 H 0.16 3.32 4.65 -2.91 -0.01 3.31 16 33 H 0.17 2.40 8.06 -2.92 -0.02 2.38 16 34 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 35 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 36 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 37 H 0.13 5.20 6.25 -2.91 -0.02 5.19 16 38 H 0.06 1.82 7.64 -2.39 -0.02 1.80 16 39 H 0.05 1.64 7.65 -2.38 -0.02 1.62 16 40 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.11 7.02 6.03 -2.91 -0.02 7.01 16 42 H 0.28 14.86 8.29 -92.71 -0.77 14.09 16 Total: -1.00 -83.24 355.05 0.52 -82.72 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: 0.21 Total: 36.61 kcal Atomic # 6 Polarization: -84.01 SS G_CDS: 4.47 Total: -79.54 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -0.95 Total: -78.22 kcal Atomic # 8 Polarization: -114.97 SS G_CDS: -4.98 Total: -119.94 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 16 Polarization: 114.81 SS G_CDS: -0.27 Total: 114.55 kcal Total: -83.24 0.52 -82.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245187260.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.288 kcal (2) G-P(sol) polarization free energy of solvation -83.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds