Wall clock time and date at job start Wed Apr 1 2020 04:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36944 * 119.99723 * 2 1 4 4 H 1.07994 * 119.99984 * 204.70048 * 3 2 1 5 5 C 1.38817 * 119.99702 * 24.70348 * 3 2 1 6 6 N 1.31614 * 120.00173 * 6.56838 * 5 3 2 7 7 Si 1.86802 * 119.99565 * 186.56907 * 5 3 2 8 8 H 1.48495 * 109.47203 * 60.00066 * 7 5 3 9 9 H 1.48498 * 109.46817 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.46871 * 299.99908 * 7 5 3 11 11 C 1.46499 * 120.00262 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.46788 * 269.99746 * 11 2 1 13 13 O 1.42898 * 109.47095 * 65.00323 * 12 11 2 14 14 C 1.42901 * 114.00300 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47182 * 179.97438 * 14 13 12 16 16 N 1.46504 * 109.47415 * 65.00048 * 15 14 13 17 17 C 1.46494 * 119.99606 * 270.00152 * 16 15 14 18 18 C 1.34775 * 119.99656 * 89.99710 * 16 15 14 19 19 O 1.21701 * 120.00744 * 0.48048 * 18 16 15 20 20 C 1.46528 * 119.99533 * 180.48910 * 18 16 15 21 21 S 1.76210 * 126.17610 * 351.25213 * 20 18 16 22 22 C 1.70918 * 90.39062 * 180.02562 * 21 20 18 23 23 N 1.29359 * 110.61739 * 0.02562 * 22 21 20 24 24 C 1.31046 * 117.45763 * 359.97438 * 23 22 21 25 25 Cl 1.73602 * 123.05547 * 179.97438 * 24 23 22 26 26 H 1.08997 * 109.47139 * 275.04640 * 1 2 3 27 27 H 1.09000 * 109.47182 * 35.05165 * 1 2 3 28 28 H 1.09002 * 109.46791 * 155.04680 * 1 2 3 29 29 H 0.97001 * 120.00111 * 179.97438 * 6 5 3 30 30 H 1.08999 * 109.47118 * 150.00483 * 11 2 1 31 31 H 1.08997 * 109.47319 * 29.99552 * 11 2 1 32 32 H 1.08996 * 109.47634 * 305.00022 * 12 11 2 33 33 H 1.09003 * 109.47133 * 184.99893 * 12 11 2 34 34 H 1.09000 * 109.47043 * 59.99160 * 14 13 12 35 35 H 1.09003 * 109.47022 * 299.99777 * 14 13 12 36 36 H 1.08997 * 109.47489 * 304.99886 * 15 14 13 37 37 H 1.09011 * 109.47079 * 184.99863 * 15 14 13 38 38 H 1.09010 * 109.47116 * 263.39347 * 17 16 15 39 39 H 1.09003 * 109.47763 * 23.39761 * 17 16 15 40 40 H 1.09002 * 109.47080 * 143.40454 * 17 16 15 41 41 H 1.08000 * 124.69313 * 180.26967 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1555 1.2288 -0.3908 5 6 1.5508 2.3331 0.5024 6 7 0.3783 2.2575 1.0957 7 14 2.4090 3.9840 0.3365 8 1 2.6201 4.2898 -1.1012 9 1 1.5678 5.0429 0.9500 10 1 3.7214 3.9315 1.0294 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4418 13 8 1.2062 -1.9944 2.0805 14 6 1.3325 -2.4189 3.4392 15 6 -0.0565 -2.6922 4.0194 16 7 -0.6661 -3.8231 3.3152 17 6 -1.4803 -3.5887 2.1201 18 6 -0.4777 -5.0788 3.7668 19 8 0.1915 -5.2728 4.7646 20 6 -1.0785 -6.2107 3.0563 21 16 -2.2422 -6.1112 1.7369 22 6 -2.2934 -7.8167 1.6378 23 7 -1.5081 -8.3479 2.5178 24 6 -0.8381 -7.5359 3.2982 25 17 0.2545 -8.0909 4.5279 26 1 -0.3633 0.0904 1.0236 27 1 -0.3633 0.8413 -0.5902 28 1 -0.3633 -0.9318 -0.4336 29 1 -0.0400 3.0591 1.4471 30 1 3.1500 -1.1381 -0.5143 31 1 1.6085 -2.0282 -0.5146 32 1 2.9643 -0.9138 1.9812 33 1 3.0734 -2.6069 1.4427 34 1 1.8212 -1.6368 4.0202 35 1 1.9299 -3.3297 3.4812 36 1 -0.6820 -1.8080 3.8967 37 1 0.0329 -2.9299 5.0795 38 1 -2.5341 -3.5617 2.3979 39 1 -1.1988 -2.6370 1.6694 40 1 -1.3141 -4.3933 1.4037 41 1 -2.8949 -8.3739 0.9348 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264111496.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:21 Heat of formation + Delta-G solvation = 5.071521 kcal Electronic energy + Delta-G solvation = -26314.660620 eV Core-core repulsion = 22384.687590 eV Total energy + Delta-G solvation = -3929.973030 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -40.44422 -39.48008 -37.50685 -36.73800 -35.76050 -35.01685 -31.82665 -31.17724 -29.65568 -28.04825 -27.08550 -25.99423 -25.73771 -23.48715 -22.95579 -21.17899 -20.33065 -19.99723 -18.69132 -17.03004 -16.90128 -16.59717 -16.20170 -15.70023 -15.68601 -15.08131 -14.91145 -14.84030 -14.46305 -13.84651 -13.71813 -13.36475 -13.25455 -13.12855 -12.96741 -12.32773 -12.20935 -12.09601 -11.90992 -11.49651 -11.38207 -11.23249 -10.98281 -10.83768 -10.78252 -10.53913 -10.22707 -10.10288 -9.97279 -9.94722 -9.82383 -9.80200 -9.23796 -8.95496 -8.69030 -8.51079 -6.67380 -5.68552 -3.16287 -0.21035 0.59551 1.07966 1.87859 2.01147 2.74374 2.92246 3.38413 3.43844 3.44318 3.99088 4.23239 4.39915 4.51826 4.54561 4.89090 5.15341 5.17641 5.31571 5.38995 5.43285 5.57866 5.64743 5.68637 5.82742 5.89890 6.10735 6.18564 6.25237 6.37668 6.55910 6.76834 6.88915 6.98496 7.16061 7.48271 7.79905 7.83777 7.91454 7.93168 8.44848 9.29241 9.91583 10.42432 11.35308 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.020756 B = 0.002588 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.698886 B =10815.136240 C =11305.259214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.597 5.597 3 C -0.257 4.257 4 H 0.065 0.935 5 C 0.005 3.995 6 N -0.905 5.905 7 Si 0.902 3.098 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.154 3.846 12 C 0.045 3.955 13 O -0.368 6.368 14 C 0.047 3.953 15 C 0.124 3.876 16 N -0.595 5.595 17 C 0.066 3.934 18 C 0.588 3.412 19 O -0.514 6.514 20 C -0.286 4.286 21 S 0.253 5.747 22 C 0.004 3.996 23 N -0.474 5.474 24 C 0.179 3.821 25 Cl 0.025 6.975 26 H 0.033 0.967 27 H 0.036 0.964 28 H -0.009 1.009 29 H 0.251 0.749 30 H 0.057 0.943 31 H 0.042 0.958 32 H 0.048 0.952 33 H 0.022 0.978 34 H 0.056 0.944 35 H 0.042 0.958 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.114 0.886 40 H 0.067 0.933 41 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.561 -18.356 2.178 19.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.319 5.319 3 C -0.386 4.386 4 H 0.083 0.917 5 C -0.194 4.194 6 N -0.550 5.550 7 Si 0.733 3.267 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.211 1.211 11 C 0.026 3.974 12 C -0.035 4.035 13 O -0.287 6.287 14 C -0.032 4.032 15 C 0.002 3.998 16 N -0.327 5.327 17 C -0.079 4.079 18 C 0.374 3.626 19 O -0.391 6.391 20 C -0.412 4.412 21 S 0.509 5.491 22 C -0.290 4.290 23 N -0.189 5.189 24 C 0.013 3.987 25 Cl 0.053 6.947 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.009 0.991 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.132 0.868 40 H 0.084 0.916 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -7.936 -18.142 2.209 19.924 hybrid contribution 1.372 0.413 0.761 1.622 sum -6.564 -17.729 2.970 19.137 Atomic orbital electron populations 1.20702 0.82275 0.94488 0.99339 1.43838 1.02097 1.00174 1.85836 1.19158 0.99175 0.86155 1.34151 0.91738 1.25073 0.97442 0.98478 0.98366 1.70046 1.16336 1.27334 1.41282 0.86379 0.78773 0.83913 0.77673 1.21129 1.21660 1.21084 1.20880 0.96364 0.88772 0.91382 1.23455 0.85224 0.96772 0.98030 1.87899 1.30406 1.87256 1.23163 1.22769 0.96533 0.98220 0.85634 1.21652 0.93816 0.87888 0.96410 1.47566 1.50845 1.05681 1.28610 1.22131 0.94730 1.04309 0.86684 1.16625 0.80587 0.81416 0.83951 1.90875 1.39382 1.84072 1.24782 1.25720 1.10255 0.97725 1.07503 1.84704 1.34792 1.03370 1.26268 1.29035 1.00021 1.00081 0.99865 1.65750 1.08699 1.38552 1.05919 1.21071 0.96116 0.87011 0.94524 1.98441 1.58241 1.89818 1.48176 0.94894 0.94527 0.99078 0.93873 0.92512 0.93975 0.93411 0.95966 0.92606 0.93942 0.88664 0.88448 0.91699 0.86767 0.91569 0.77548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 4.22 8.60 59.85 0.51 4.74 16 2 N -0.60 -14.67 2.89 -181.12 -0.52 -15.19 16 3 C -0.26 -6.92 9.67 -15.05 -0.15 -7.07 16 4 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 5 C 0.00 0.13 5.22 -17.43 -0.09 0.04 16 6 N -0.90 -25.71 10.48 55.49 0.58 -25.12 16 7 Si 0.90 21.55 29.56 -169.99 -5.02 16.52 16 8 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 C 0.15 3.10 6.11 -4.04 -0.02 3.07 16 12 C 0.04 0.84 6.28 37.16 0.23 1.07 16 13 O -0.37 -6.73 8.85 -35.23 -0.31 -7.04 16 14 C 0.05 0.73 6.28 37.16 0.23 0.96 16 15 C 0.12 1.67 5.78 -4.04 -0.02 1.64 16 16 N -0.59 -7.66 2.84 -183.18 -0.52 -8.17 16 17 C 0.07 0.70 8.71 59.84 0.52 1.22 16 18 C 0.59 8.26 7.63 -12.92 -0.10 8.16 16 19 O -0.51 -8.48 14.80 5.19 0.08 -8.40 16 20 C -0.29 -3.47 6.27 -36.75 -0.23 -3.70 16 21 S 0.25 1.95 18.15 -107.50 -1.95 0.00 16 22 C 0.00 0.03 12.20 51.72 0.63 0.66 16 23 N -0.47 -5.42 10.50 -12.22 -0.13 -5.55 16 24 C 0.18 2.30 7.41 -18.39 -0.14 2.16 16 25 Cl 0.02 0.33 27.43 -51.86 -1.42 -1.09 16 26 H 0.03 0.85 7.34 -51.93 -0.38 0.47 16 27 H 0.04 0.95 7.27 -51.93 -0.38 0.57 16 28 H -0.01 -0.20 7.84 -51.93 -0.41 -0.60 16 29 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.06 1.09 8.04 -51.93 -0.42 0.67 16 31 H 0.04 0.78 7.86 -51.93 -0.41 0.37 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 1.25 8.07 -51.93 -0.42 0.83 16 37 H 0.10 1.25 7.41 -51.92 -0.38 0.86 16 38 H 0.06 0.54 7.81 -51.92 -0.41 0.13 16 39 H 0.11 1.42 7.26 -51.93 -0.38 1.05 16 40 H 0.07 0.64 4.62 -23.81 -0.11 0.53 16 41 H 0.21 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 367.29 15.07 5.53 5.53 Total: -1.00 -32.82 367.29 -7.65 -40.47 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: -5.35 Total: -4.91 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: 1.38 Total: 12.96 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.59 Total: -54.05 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.24 Total: -15.44 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -1.95 Total: 0.00 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -1.42 Total: -1.09 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.82 -7.65 -40.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264111496.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.545 kcal (2) G-P(sol) polarization free energy of solvation -32.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds