Wall clock time and date at job start Wed Apr 1 2020 04:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36944 * 119.99723 * 2 1 4 4 H 1.07994 * 119.99984 * 204.70048 * 3 2 1 5 5 C 1.38817 * 119.99702 * 24.70348 * 3 2 1 6 6 N 1.31614 * 120.00173 * 6.56838 * 5 3 2 7 7 Si 1.86802 * 119.99565 * 186.56907 * 5 3 2 8 8 H 1.48495 * 109.47203 * 60.00066 * 7 5 3 9 9 H 1.48498 * 109.46817 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.46871 * 299.99908 * 7 5 3 11 11 C 1.46499 * 120.00262 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.46788 * 269.99746 * 11 2 1 13 13 O 1.42898 * 109.47095 * 65.00323 * 12 11 2 14 14 C 1.42901 * 114.00300 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47182 * 179.97438 * 14 13 12 16 16 N 1.46504 * 109.47415 * 65.00048 * 15 14 13 17 17 C 1.46494 * 119.99606 * 270.00152 * 16 15 14 18 18 C 1.34775 * 119.99656 * 89.99710 * 16 15 14 19 19 O 1.21701 * 120.00744 * 0.48048 * 18 16 15 20 20 C 1.46528 * 119.99533 * 180.48910 * 18 16 15 21 21 S 1.76210 * 126.17610 * 351.25213 * 20 18 16 22 22 C 1.70918 * 90.39062 * 180.02562 * 21 20 18 23 23 N 1.29359 * 110.61739 * 0.02562 * 22 21 20 24 24 C 1.31046 * 117.45763 * 359.97438 * 23 22 21 25 25 Cl 1.73602 * 123.05547 * 179.97438 * 24 23 22 26 26 H 1.08997 * 109.47139 * 275.04640 * 1 2 3 27 27 H 1.09000 * 109.47182 * 35.05165 * 1 2 3 28 28 H 1.09002 * 109.46791 * 155.04680 * 1 2 3 29 29 H 0.97001 * 120.00111 * 179.97438 * 6 5 3 30 30 H 1.08999 * 109.47118 * 150.00483 * 11 2 1 31 31 H 1.08997 * 109.47319 * 29.99552 * 11 2 1 32 32 H 1.08996 * 109.47634 * 305.00022 * 12 11 2 33 33 H 1.09003 * 109.47133 * 184.99893 * 12 11 2 34 34 H 1.09000 * 109.47043 * 59.99160 * 14 13 12 35 35 H 1.09003 * 109.47022 * 299.99777 * 14 13 12 36 36 H 1.08997 * 109.47489 * 304.99886 * 15 14 13 37 37 H 1.09011 * 109.47079 * 184.99863 * 15 14 13 38 38 H 1.09010 * 109.47116 * 263.39347 * 17 16 15 39 39 H 1.09003 * 109.47763 * 23.39761 * 17 16 15 40 40 H 1.09002 * 109.47080 * 143.40454 * 17 16 15 41 41 H 1.08000 * 124.69313 * 180.26967 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1555 1.2288 -0.3908 5 6 1.5508 2.3331 0.5024 6 7 0.3783 2.2575 1.0957 7 14 2.4090 3.9840 0.3365 8 1 2.6201 4.2898 -1.1012 9 1 1.5678 5.0429 0.9500 10 1 3.7214 3.9315 1.0294 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4418 13 8 1.2062 -1.9944 2.0805 14 6 1.3325 -2.4189 3.4392 15 6 -0.0565 -2.6922 4.0194 16 7 -0.6661 -3.8231 3.3152 17 6 -1.4803 -3.5887 2.1201 18 6 -0.4777 -5.0788 3.7668 19 8 0.1915 -5.2728 4.7646 20 6 -1.0785 -6.2107 3.0563 21 16 -2.2422 -6.1112 1.7369 22 6 -2.2934 -7.8167 1.6378 23 7 -1.5081 -8.3479 2.5178 24 6 -0.8381 -7.5359 3.2982 25 17 0.2545 -8.0909 4.5279 26 1 -0.3633 0.0904 1.0236 27 1 -0.3633 0.8413 -0.5902 28 1 -0.3633 -0.9318 -0.4336 29 1 -0.0400 3.0591 1.4471 30 1 3.1500 -1.1381 -0.5143 31 1 1.6085 -2.0282 -0.5146 32 1 2.9643 -0.9138 1.9812 33 1 3.0734 -2.6069 1.4427 34 1 1.8212 -1.6368 4.0202 35 1 1.9299 -3.3297 3.4812 36 1 -0.6820 -1.8080 3.8967 37 1 0.0329 -2.9299 5.0795 38 1 -2.5341 -3.5617 2.3979 39 1 -1.1988 -2.6370 1.6694 40 1 -1.3141 -4.3933 1.4037 41 1 -2.8949 -8.3739 0.9348 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264111496.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:20 Heat of formation + Delta-G solvation = -16.728621 kcal Electronic energy + Delta-G solvation = -26315.605945 eV Core-core repulsion = 22384.687590 eV Total energy + Delta-G solvation = -3930.918355 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.37127 -40.39775 -38.93378 -37.66095 -37.21686 -36.46866 -33.49140 -32.42993 -30.82460 -29.57421 -27.98358 -27.75924 -26.85032 -24.83012 -24.46175 -22.21912 -22.03148 -20.81258 -19.59568 -18.73373 -17.96075 -17.78250 -17.26085 -17.08844 -16.86480 -16.63407 -15.96697 -15.89666 -15.56179 -15.25560 -15.09079 -14.95853 -14.48615 -14.19322 -14.00474 -13.95224 -13.42325 -13.16453 -12.99231 -12.88312 -12.80277 -12.66098 -12.59107 -12.47003 -12.26680 -12.15184 -11.98437 -11.77218 -11.67882 -11.21008 -10.78664 -10.58861 -10.57430 -10.38778 -10.09334 -9.62525 -8.65636 -7.74375 -5.23467 -0.98668 -0.17388 0.39738 1.03315 1.19997 1.49265 1.50037 1.56382 1.76085 1.93859 2.54756 2.89919 3.21521 3.38524 3.63899 3.73874 3.81250 4.01485 4.09029 4.17935 4.40367 4.47656 4.52656 4.55991 4.57050 4.62079 4.67039 4.79592 4.85954 5.03060 5.03933 5.19971 5.33128 5.48195 5.71603 5.94627 6.12360 6.29309 6.40813 6.44691 6.89522 7.25338 7.97537 8.41790 9.27406 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.020756 B = 0.002588 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.698886 B =10815.136240 C =11305.259214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.194 3.806 2 N -0.613 5.613 3 C -0.265 4.265 4 H 0.067 0.933 5 C -0.048 4.048 6 N -0.931 5.931 7 Si 0.962 3.038 8 H -0.279 1.279 9 H -0.296 1.296 10 H -0.280 1.280 11 C 0.151 3.849 12 C 0.053 3.947 13 O -0.379 6.379 14 C 0.050 3.950 15 C 0.130 3.870 16 N -0.595 5.595 17 C 0.064 3.936 18 C 0.585 3.415 19 O -0.549 6.549 20 C -0.322 4.322 21 S 0.324 5.676 22 C 0.018 3.982 23 N -0.505 5.505 24 C 0.169 3.831 25 Cl 0.004 6.996 26 H 0.009 0.991 27 H 0.006 0.994 28 H 0.024 0.976 29 H 0.245 0.755 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.020 0.980 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.040 0.960 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.489 -19.293 0.535 21.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.336 5.336 3 C -0.395 4.395 4 H 0.085 0.915 5 C -0.243 4.243 6 N -0.577 5.577 7 Si 0.791 3.209 8 H -0.205 1.205 9 H -0.222 1.222 10 H -0.206 1.206 11 C 0.025 3.975 12 C -0.027 4.027 13 O -0.298 6.298 14 C -0.028 4.028 15 C 0.007 3.993 16 N -0.327 5.327 17 C -0.080 4.080 18 C 0.372 3.628 19 O -0.429 6.429 20 C -0.448 4.448 21 S 0.581 5.419 22 C -0.274 4.274 23 N -0.220 5.220 24 C 0.002 3.998 25 Cl 0.032 6.968 26 H 0.027 0.973 27 H 0.025 0.975 28 H 0.042 0.958 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.039 0.961 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -8.866 -19.089 0.526 21.054 hybrid contribution 1.598 0.617 1.167 2.073 sum -7.267 -18.472 1.693 19.922 Atomic orbital electron populations 1.20405 0.82263 0.94801 0.97570 1.44058 1.02456 1.01106 1.85975 1.19484 0.99318 0.87356 1.33372 0.91487 1.25760 0.98247 1.01539 0.98786 1.70213 1.17507 1.27561 1.42431 0.85427 0.77705 0.80083 0.77667 1.20513 1.22193 1.20614 1.21046 0.96715 0.87386 0.92384 1.23220 0.85644 0.97004 0.96789 1.87877 1.30183 1.87343 1.24394 1.22824 0.97907 0.97706 0.84399 1.21542 0.92734 0.88358 0.96617 1.47621 1.50792 1.05194 1.29061 1.22254 0.95814 1.03852 0.86052 1.16893 0.80183 0.81994 0.83688 1.90844 1.40999 1.84656 1.26387 1.25669 1.12483 0.96728 1.09913 1.84336 1.31810 1.02725 1.22988 1.29799 0.98274 1.00689 0.98663 1.65788 1.10136 1.38932 1.07171 1.21183 0.96407 0.87556 0.94696 1.98422 1.59094 1.90030 1.49233 0.97262 0.97473 0.95764 0.94545 0.91602 0.91885 0.96147 0.93275 0.93171 0.94213 0.88430 0.88035 0.89049 0.88439 0.90449 0.73280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.21 8.60 127.77 1.10 10.31 16 2 N -0.61 -29.66 2.89 -726.94 -2.10 -31.76 16 3 C -0.26 -14.20 9.67 84.03 0.81 -13.38 16 4 H 0.07 3.48 7.83 -2.91 -0.02 3.46 16 5 C -0.05 -2.63 5.22 84.86 0.44 -2.18 16 6 N -0.93 -53.52 10.48 21.65 0.23 -53.29 16 7 Si 0.96 44.39 29.56 68.60 2.03 46.41 16 8 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 9 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 C 0.15 5.81 6.11 86.38 0.53 6.34 16 12 C 0.05 1.92 6.28 71.98 0.45 2.37 16 13 O -0.38 -13.56 8.85 -148.98 -1.32 -14.87 16 14 C 0.05 1.54 6.28 71.98 0.45 1.99 16 15 C 0.13 3.46 5.78 86.38 0.50 3.96 16 16 N -0.60 -14.74 2.84 -851.67 -2.42 -17.16 16 17 C 0.06 1.22 8.71 127.77 1.11 2.33 16 18 C 0.58 16.14 7.63 86.40 0.66 16.80 16 19 O -0.55 -18.42 14.80 -4.35 -0.06 -18.49 16 20 C -0.32 -7.39 6.27 24.10 0.15 -7.24 16 21 S 0.32 3.92 18.15 -56.49 -1.03 2.89 16 22 C 0.02 0.21 12.20 130.61 1.59 1.81 16 23 N -0.50 -10.57 10.50 -192.57 -2.02 -12.59 16 24 C 0.17 4.21 7.41 84.48 0.63 4.84 16 25 Cl 0.00 0.10 27.43 -2.72 -0.07 0.03 16 26 H 0.01 0.47 7.34 -2.39 -0.02 0.45 16 27 H 0.01 0.34 7.27 -2.39 -0.02 0.33 16 28 H 0.02 0.96 7.84 -2.39 -0.02 0.94 16 29 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 30 H 0.07 2.40 8.04 -2.39 -0.02 2.38 16 31 H 0.06 2.16 7.86 -2.39 -0.02 2.14 16 32 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.10 2.55 8.07 -2.39 -0.02 2.53 16 37 H 0.10 2.62 7.41 -2.38 -0.02 2.60 16 38 H 0.09 1.25 7.81 -2.38 -0.02 1.23 16 39 H 0.10 2.27 7.26 -2.39 -0.02 2.25 16 40 H 0.08 1.26 4.62 -20.26 -0.09 1.17 16 41 H 0.25 0.50 8.06 -2.91 -0.02 0.47 16 Total: -1.00 -72.06 367.29 2.63 -69.43 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: 0.97 Total: 1.45 kcal Atomic # 6 Polarization: 19.52 SS G_CDS: 8.43 Total: 27.94 kcal Atomic # 7 Polarization: -108.49 SS G_CDS: -6.31 Total: -114.80 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -1.38 Total: -33.36 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -1.03 Total: 2.89 kcal Atomic # 17 Polarization: 0.10 SS G_CDS: -0.07 Total: 0.03 kcal Total: -72.06 2.63 -69.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264111496.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.706 kcal (2) G-P(sol) polarization free energy of solvation -72.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds