Wall clock time and date at job start Wed Apr 1 2020 04:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47390 * 2 1 4 4 C 1.53001 * 109.47427 * 120.00161 * 2 1 3 5 5 H 1.09002 * 109.47124 * 184.99720 * 4 2 1 6 6 C 1.53000 * 109.47050 * 64.99923 * 4 2 1 7 7 N 1.46500 * 109.47226 * 184.99747 * 6 4 2 8 8 C 1.34775 * 120.00023 * 179.97438 * 7 6 4 9 9 O 1.21713 * 120.00175 * 355.38346 * 8 7 6 10 10 C 1.46546 * 119.99581 * 175.38475 * 8 7 6 11 11 C 1.37958 * 126.22803 * 356.44460 * 10 8 7 12 12 C 1.39783 * 107.13038 * 180.02562 * 11 10 8 13 13 Cl 1.73604 * 126.06139 * 179.97438 * 12 11 10 14 14 C 1.35724 * 107.87539 * 0.02562 * 12 11 10 15 15 Cl 1.73599 * 125.58303 * 179.97438 * 14 12 11 16 16 N 1.35661 * 108.83138 * 359.72940 * 14 12 11 17 17 C 1.46499 * 125.69397 * 180.26569 * 16 14 12 18 18 N 1.46497 * 109.46961 * 304.99707 * 4 2 1 19 19 C 1.36928 * 120.00154 * 274.72401 * 18 4 2 20 20 H 1.08004 * 120.00197 * 0.27633 * 19 18 4 21 21 C 1.38816 * 120.00392 * 180.27745 * 19 18 4 22 22 N 1.31628 * 119.99381 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00352 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47464 * 59.99847 * 23 21 19 25 25 H 1.48502 * 109.47006 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47126 * 299.99607 * 23 21 19 27 27 H 1.09007 * 109.46914 * 299.99472 * 1 2 3 28 28 H 1.08999 * 109.47462 * 59.99714 * 1 2 3 29 29 H 1.08997 * 109.47112 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47239 * 240.00094 * 2 1 3 31 31 H 1.08999 * 109.47052 * 300.00538 * 3 2 1 32 32 H 1.08995 * 109.47056 * 59.99849 * 3 2 1 33 33 H 1.08997 * 109.47477 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.46972 * 305.00262 * 6 4 2 35 35 H 1.08996 * 109.47105 * 64.99966 * 6 4 2 36 36 H 0.97006 * 119.99932 * 0.02562 * 7 6 4 37 37 H 1.07998 * 126.43136 * 0.02562 * 11 10 8 38 38 H 1.09003 * 109.47136 * 266.54236 * 17 16 14 39 39 H 1.08996 * 109.47325 * 26.54469 * 17 16 14 40 40 H 1.09003 * 109.46695 * 146.54568 * 17 16 14 41 41 H 0.97008 * 119.99396 * 95.00568 * 18 4 2 42 42 H 0.97004 * 119.99417 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1264 -0.6444 1.2950 6 6 1.6353 -2.1955 1.1879 7 7 2.0185 -2.8595 2.4363 8 6 1.7589 -4.1706 2.6095 9 8 1.1319 -4.7835 1.7653 10 6 2.2315 -4.8581 3.8143 11 6 3.0072 -4.3098 4.8147 12 6 3.2229 -5.3122 5.7646 13 17 4.1401 -5.1514 7.2298 14 6 2.5891 -6.4340 5.3379 15 17 2.5595 -7.9566 6.1713 16 7 1.9780 -6.1689 4.1561 17 6 1.1842 -7.1186 3.3723 18 7 1.4560 -0.1037 2.4423 19 6 2.0474 0.9967 3.0029 20 1 2.9420 1.4121 2.5629 21 6 1.4973 1.5785 4.1369 22 7 0.4073 1.0720 4.6735 23 14 2.3037 3.0801 4.9012 24 1 2.3331 4.1850 3.9094 25 1 1.5280 3.5053 6.0939 26 1 3.6916 2.7433 5.3083 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8901 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 0.5564 -2.2707 1.0527 35 1 2.1408 -2.6765 0.3506 36 1 2.4585 -2.3552 3.1386 37 1 3.3780 -3.2963 4.8560 38 1 1.8224 -7.6022 2.6327 39 1 0.7609 -7.8727 4.0357 40 1 0.3787 -6.5872 2.8653 41 1 0.6525 -0.4768 2.8376 42 1 0.0231 1.4784 5.4661 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271846065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:52 Heat of formation + Delta-G solvation = 2.878774 kcal Electronic energy + Delta-G solvation = -26221.416173 eV Core-core repulsion = 22289.304352 eV Total energy + Delta-G solvation = -3932.111821 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.091 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.67058 -39.12001 -37.31495 -36.97020 -36.52684 -34.22943 -32.93773 -32.88259 -30.42970 -29.55200 -27.64004 -26.74943 -26.37484 -23.99871 -22.94268 -21.76843 -20.82511 -19.86970 -18.84769 -18.10092 -17.24794 -16.26151 -16.14052 -15.83419 -15.15842 -14.72388 -14.45899 -14.27377 -14.17180 -13.72356 -13.58322 -13.38437 -13.28355 -13.16130 -13.00842 -12.47137 -12.24305 -12.07486 -11.95538 -11.60307 -11.50150 -11.33423 -11.03184 -11.00112 -10.94317 -10.83353 -10.58146 -10.30244 -10.16939 -9.99548 -9.85735 -9.48892 -8.95156 -8.91913 -8.81705 -8.29872 -7.04978 -5.82839 -3.12225 1.15092 1.27335 1.97212 2.12472 2.73951 3.34931 3.39865 3.45469 3.46958 3.50908 4.52778 4.53410 4.74253 4.87660 5.03129 5.29082 5.31528 5.40527 5.44510 5.48289 5.62539 5.70853 5.79623 5.84394 6.02814 6.11044 6.18742 6.31516 6.37568 6.42359 6.49742 6.56354 6.60326 6.65140 6.78743 6.84327 7.04835 7.27747 7.65211 7.74953 8.32173 8.34637 9.46504 10.00091 10.36172 11.38576 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.011040 B = 0.003309 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.676409 B = 8459.180434 C =10427.234483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C -0.142 4.142 4 C 0.167 3.833 5 H 0.055 0.945 6 C 0.114 3.886 7 N -0.693 5.693 8 C 0.587 3.413 9 O -0.556 6.556 10 C -0.009 4.009 11 C -0.115 4.115 12 C -0.094 4.094 13 Cl -0.032 7.032 14 C 0.086 3.914 15 Cl -0.003 7.003 16 N -0.396 5.396 17 C 0.066 3.934 18 N -0.717 5.717 19 C -0.240 4.240 20 H 0.072 0.928 21 C -0.007 4.007 22 N -0.928 5.928 23 Si 0.901 3.099 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.286 1.286 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.032 0.968 32 H 0.086 0.914 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.414 0.586 37 H 0.168 0.832 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.386 0.614 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.284 -15.502 -1.823 16.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 C -0.199 4.199 4 C 0.057 3.943 5 H 0.073 0.927 6 C -0.010 4.010 7 N -0.344 5.344 8 C 0.373 3.627 9 O -0.437 6.437 10 C -0.124 4.124 11 C -0.141 4.141 12 C -0.129 4.129 13 Cl -0.004 7.004 14 C -0.058 4.058 15 Cl 0.025 6.975 16 N -0.072 5.072 17 C -0.074 4.074 18 N -0.359 5.359 19 C -0.371 4.371 20 H 0.090 0.910 21 C -0.204 4.204 22 N -0.575 5.575 23 Si 0.732 3.268 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.213 1.213 27 H 0.091 0.909 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.252 0.748 37 H 0.185 0.815 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.128 0.872 41 H 0.220 0.780 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.802 -16.127 -2.395 16.741 hybrid contribution 0.374 0.789 1.182 1.470 sum 4.176 -15.337 -1.213 15.942 Atomic orbital electron populations 1.21776 0.95684 1.00605 1.01763 1.21610 0.96177 0.97200 0.97842 1.21837 0.99567 0.96337 1.02170 1.20557 0.97011 0.88122 0.88642 0.92709 1.21827 1.00909 0.93608 0.84646 1.45657 1.60166 1.08089 1.20449 1.16696 0.79685 0.82478 0.83878 1.90778 1.41544 1.66513 1.44839 1.20140 1.08141 0.84302 0.99794 1.21329 1.00971 0.99818 0.92004 1.19550 1.05972 0.93607 0.93762 1.98343 1.71866 1.97739 1.32426 1.20521 1.05330 0.89831 0.90089 1.98392 1.97529 1.26977 1.74590 1.43696 1.37857 1.10027 1.15643 1.22381 0.96742 0.92407 0.95901 1.42414 1.31778 1.33430 1.28322 1.19132 1.07186 1.04218 1.06542 0.90973 1.24703 0.97743 0.99412 0.98528 1.69647 1.21910 1.42321 1.23630 0.86369 0.78523 0.83167 0.78704 1.21351 1.21840 1.21261 0.90928 0.94411 0.93821 0.93260 0.94860 0.89533 0.94124 0.91026 0.91657 0.74801 0.81470 0.89767 0.89597 0.87176 0.77996 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.74 37.16 0.32 -1.98 16 2 C -0.11 -1.71 2.74 -90.62 -0.25 -1.96 16 3 C -0.14 -2.40 8.46 37.16 0.31 -2.09 16 4 C 0.17 2.86 2.28 -67.93 -0.16 2.70 16 5 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 6 C 0.11 1.78 5.10 -4.04 -0.02 1.76 16 7 N -0.69 -10.79 5.37 -61.66 -0.33 -11.12 16 8 C 0.59 9.27 7.77 -12.91 -0.10 9.17 16 9 O -0.56 -9.69 14.81 5.18 0.08 -9.61 16 10 C -0.01 -0.13 6.89 -81.93 -0.56 -0.70 16 11 C -0.12 -1.59 10.34 -39.11 -0.40 -2.00 16 12 C -0.09 -1.27 6.66 -39.90 -0.27 -1.53 16 13 Cl -0.03 -0.41 29.12 -51.86 -1.51 -1.92 16 14 C 0.09 1.09 7.39 -16.76 -0.12 0.96 16 15 Cl 0.00 -0.03 28.42 -51.86 -1.47 -1.51 16 16 N -0.40 -5.11 3.17 -116.64 -0.37 -5.48 16 17 C 0.07 0.67 10.30 59.85 0.62 1.29 16 18 N -0.72 -15.16 3.52 -53.43 -0.19 -15.35 16 19 C -0.24 -5.76 7.76 -15.06 -0.12 -5.88 16 20 H 0.07 1.70 7.33 -52.48 -0.38 1.32 16 21 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 22 N -0.93 -25.79 13.06 55.49 0.72 -25.06 16 23 Si 0.90 20.98 29.55 -169.99 -5.02 15.96 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 27 H 0.07 1.41 7.47 -51.92 -0.39 1.02 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.67 6.46 -51.93 -0.34 0.34 16 30 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 1.74 6.01 -51.93 -0.31 1.43 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.19 6.34 -51.93 -0.33 0.86 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.41 6.56 7.05 -40.82 -0.29 6.27 16 37 H 0.17 2.17 7.46 -52.49 -0.39 1.78 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.69 7.64 -51.93 -0.40 0.29 16 40 H 0.11 1.26 6.62 -51.93 -0.34 0.91 16 41 H 0.39 9.04 7.80 -40.82 -0.32 8.72 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 373.73 15.07 5.63 5.63 Total: -1.00 -27.36 373.73 -8.88 -36.25 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -5.58 Total: 12.75 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -0.84 Total: -0.54 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.16 Total: -57.01 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.08 Total: -9.61 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -2.98 Total: -3.43 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -27.36 -8.88 -36.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271846065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.126 kcal (2) G-P(sol) polarization free energy of solvation -27.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds