Wall clock time and date at job start Wed Apr 1 2020 04:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42100 * 110.54180 * 2 1 4 4 O 1.42096 * 110.54471 * 223.25536 * 2 1 3 5 5 N 1.65594 * 104.45165 * 111.62426 * 2 1 3 6 6 C 1.46505 * 119.99839 * 64.99981 * 5 2 1 7 7 C 1.52997 * 109.47196 * 164.99652 * 6 5 2 8 8 N 1.46505 * 109.47196 * 179.97438 * 7 6 5 9 9 C 1.34769 * 119.99807 * 180.02562 * 8 7 6 10 10 S 1.71200 * 120.00350 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99789 * 179.97438 * 9 8 7 12 12 C 1.40148 * 119.99997 * 185.11440 * 11 9 8 13 13 C 1.40409 * 125.97469 * 174.94245 * 12 11 9 14 14 C 1.35242 * 107.86704 * 179.71805 * 13 12 11 15 15 N 1.34960 * 107.85839 * 0.42197 * 14 13 12 16 16 C 1.46503 * 125.97168 * 179.83982 * 15 14 13 17 17 C 1.50699 * 109.47187 * 124.71443 * 16 15 14 18 18 H 1.08005 * 120.00165 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00129 * 180.02562 * 17 16 15 20 20 N 1.31507 * 119.99748 * 359.72250 * 19 17 16 21 21 Si 1.86800 * 120.00086 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47275 * 179.72497 * 21 19 17 23 23 H 1.48504 * 109.47166 * 299.72439 * 21 19 17 24 24 H 1.48500 * 109.47237 * 59.72267 * 21 19 17 25 25 N 1.31218 * 125.97315 * 354.91511 * 12 11 9 26 26 H 1.08997 * 109.46773 * 308.37488 * 1 2 3 27 27 H 1.09003 * 109.46984 * 68.37459 * 1 2 3 28 28 H 1.09002 * 109.46777 * 188.37437 * 1 2 3 29 29 H 0.96995 * 120.00642 * 245.00199 * 5 2 1 30 30 H 1.09010 * 109.46797 * 45.00247 * 6 5 2 31 31 H 1.08999 * 109.47435 * 284.99953 * 6 5 2 32 32 H 1.09010 * 109.46762 * 60.00573 * 7 6 5 33 33 H 1.08999 * 109.47485 * 300.00910 * 7 6 5 34 34 H 0.96997 * 119.99701 * 0.02562 * 8 7 6 35 35 H 0.96997 * 120.00027 * 5.11561 * 11 9 8 36 36 H 1.08004 * 126.06485 * 359.97330 * 13 12 11 37 37 H 1.07996 * 126.06717 * 180.29268 * 14 13 12 38 38 H 1.09003 * 109.47217 * 4.71523 * 16 15 14 39 39 H 1.08999 * 109.47147 * 244.71556 * 16 15 14 40 40 H 0.96993 * 120.00553 * 0.27902 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9691 -0.9118 5 7 2.2273 -0.5909 1.4907 6 6 1.8909 -1.9706 1.8507 7 6 2.6877 -2.3831 3.0900 8 7 2.3508 -3.7626 3.4504 9 6 2.9351 -4.3421 4.5176 10 16 4.0705 -3.4661 5.4527 11 7 2.6248 -5.6110 4.8495 12 6 3.1494 -6.1778 6.0190 13 6 2.8332 -7.4446 6.5353 14 6 3.5503 -7.6218 7.6682 15 7 4.2861 -6.5087 7.8705 16 6 5.2050 -6.2758 8.9875 17 6 6.5700 -5.9289 8.4512 18 1 6.7365 -5.8866 7.3849 19 6 7.6066 -5.6666 9.3217 20 7 7.4027 -5.7139 10.6201 21 14 9.2983 -5.2360 8.6569 22 1 10.2282 -4.9942 9.7891 23 1 9.8064 -6.3603 7.8305 24 1 9.2052 -4.0111 7.8226 25 7 4.0223 -5.6174 6.8226 26 1 -0.3633 0.6380 0.8056 27 1 -0.3633 0.3787 -0.9554 28 1 -0.3633 -1.0167 0.1497 29 1 2.6921 -0.0237 2.1255 30 1 2.1395 -2.6334 1.0217 31 1 0.8244 -2.0406 2.0646 32 1 2.4391 -1.7204 3.9190 33 1 3.7542 -2.3131 2.8762 34 1 1.7072 -4.2588 2.9208 35 1 2.0384 -6.1319 4.2789 36 1 2.1432 -8.1537 6.1021 37 1 3.5350 -8.4975 8.2999 38 1 5.2724 -7.1773 9.5966 39 1 4.8342 -5.4521 9.5974 40 1 6.5242 -5.9371 10.9653 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321910247.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:06 Heat of formation + Delta-G solvation = 45.314799 kcal Electronic energy + Delta-G solvation = -24762.716348 eV Core-core repulsion = 20868.824855 eV Total energy + Delta-G solvation = -3893.891493 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.087 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.61168 -38.95955 -37.63530 -36.74739 -36.43749 -34.75348 -33.57468 -30.94339 -30.08336 -29.41128 -28.89849 -26.27472 -24.17951 -23.55805 -22.77597 -20.88441 -20.31605 -20.00494 -18.34891 -18.21256 -17.20387 -17.03032 -16.87241 -16.75513 -15.99512 -15.81340 -15.23872 -15.08700 -14.89828 -14.46110 -13.98891 -13.81481 -13.70678 -13.67441 -13.27451 -12.92760 -12.73536 -12.60079 -12.57603 -12.48018 -12.15248 -11.88757 -11.64325 -11.56999 -11.00449 -10.69877 -10.65431 -10.25040 -10.05766 -10.02063 -9.97813 -8.90624 -8.44536 -8.24015 -7.89499 -7.36479 -6.53651 -6.44015 -4.15641 -0.30903 1.34445 1.85685 2.24532 2.58510 2.79419 3.24538 3.31880 3.47809 3.48246 3.53987 3.63574 3.70446 3.81444 4.00165 4.17873 4.36242 4.44462 4.54201 4.68971 4.92375 5.05990 5.21220 5.31844 5.35185 5.47360 5.50270 5.83472 5.98746 6.24914 6.34565 6.38333 6.52462 6.71386 6.88297 7.24595 7.39252 7.80842 7.90518 8.51065 8.61190 8.76551 9.51144 10.94101 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.015298 B = 0.002146 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.866586 B =13045.780051 C =14443.354880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.619 3.381 3 O -0.954 6.954 4 O -0.955 6.955 5 N -1.115 6.115 6 C 0.103 3.897 7 C 0.121 3.879 8 N -0.694 5.694 9 C 0.522 3.478 10 S -0.510 6.510 11 N -0.587 5.587 12 C 0.230 3.770 13 C -0.306 4.306 14 C 0.057 3.943 15 N -0.330 5.330 16 C 0.249 3.751 17 C -0.597 4.597 18 H 0.065 0.935 19 C 0.022 3.978 20 N -0.909 5.909 21 Si 1.075 2.925 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.283 1.283 25 N -0.181 5.181 26 H 0.131 0.869 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.424 0.576 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.393 0.607 35 H 0.404 0.596 36 H 0.136 0.864 37 H 0.164 0.836 38 H 0.041 0.959 39 H 0.035 0.965 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.479 4.876 -20.610 29.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.710 3.290 3 O -0.944 6.944 4 O -0.945 6.945 5 N -0.876 5.876 6 C -0.025 4.025 7 C -0.004 4.004 8 N -0.328 5.328 9 C 0.167 3.833 10 S -0.382 6.382 11 N -0.213 5.213 12 C -0.026 4.026 13 C -0.339 4.339 14 C -0.093 4.093 15 N -0.110 5.110 16 C 0.130 3.870 17 C -0.635 4.635 18 H 0.083 0.917 19 C -0.182 4.182 20 N -0.545 5.545 21 Si 0.902 3.098 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.210 1.210 25 N -0.010 5.010 26 H 0.149 0.851 27 H 0.148 0.852 28 H 0.145 0.855 29 H 0.260 0.740 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.229 0.771 35 H 0.242 0.758 36 H 0.154 0.846 37 H 0.182 0.818 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.801 7.186 -19.946 27.051 hybrid contribution -3.916 -2.147 -1.065 4.592 sum -20.718 5.039 -21.011 29.935 Atomic orbital electron populations 1.30537 1.28375 1.11626 1.11825 1.04651 0.77488 0.73888 0.72939 1.93649 1.77866 1.37462 1.85425 1.93633 1.76950 1.61895 1.61978 1.55444 1.74570 1.20488 1.37056 1.21396 0.99268 0.83058 0.98744 1.21725 1.01625 0.80570 0.96511 1.44531 1.44430 1.15396 1.28443 1.22564 0.88746 0.85531 0.86440 1.93880 1.31323 1.60975 1.52062 1.41554 1.47147 1.10090 1.22516 1.19156 1.00157 0.93630 0.89617 1.20648 1.13259 0.98116 1.01871 1.22400 0.95068 0.93602 0.98273 1.50026 1.30662 1.10428 1.19892 1.19731 0.88282 0.97444 0.81558 1.22078 0.93367 1.51982 0.96082 0.91676 1.25858 1.04276 0.93911 0.94135 1.70848 1.25697 1.45288 1.12713 0.83451 0.74312 0.76865 0.75191 1.20724 1.21391 1.20961 1.80070 1.13654 1.10574 0.96698 0.85060 0.85204 0.85460 0.73995 0.89364 0.91112 0.88730 0.88522 0.77108 0.75839 0.84615 0.81842 0.94124 0.94678 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -1.12 10.89 101.05 1.10 -0.02 16 2 S 2.62 13.95 6.10 -107.50 -0.66 13.30 16 3 O -0.95 -8.93 18.08 -57.54 -1.04 -9.97 16 4 O -0.95 -8.79 17.50 -57.54 -1.01 -9.80 16 5 N -1.12 -4.97 5.89 -10.61 -0.06 -5.03 16 6 C 0.10 0.41 6.25 -4.04 -0.03 0.38 16 7 C 0.12 0.91 5.27 -4.04 -0.02 0.89 16 8 N -0.69 -5.69 5.56 -62.03 -0.34 -6.04 16 9 C 0.52 7.33 7.95 -86.92 -0.69 6.64 16 10 S -0.51 -10.58 25.81 -107.50 -2.77 -13.35 16 11 N -0.59 -7.80 5.45 -12.68 -0.07 -7.87 16 12 C 0.23 4.20 7.76 -154.40 -1.20 3.00 16 13 C -0.31 -4.94 10.83 -39.83 -0.43 -5.37 16 14 C 0.06 1.04 11.43 -17.24 -0.20 0.84 16 15 N -0.33 -7.58 3.67 -62.56 -0.23 -7.81 16 16 C 0.25 6.40 5.57 -5.19 -0.03 6.37 16 17 C -0.60 -17.35 9.24 -34.44 -0.32 -17.66 16 18 H 0.06 2.01 7.81 -52.48 -0.41 1.60 16 19 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 20 N -0.91 -27.25 13.65 55.43 0.76 -26.50 16 21 Si 1.07 26.29 29.90 -169.99 -5.08 21.21 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 25 N -0.18 -4.20 9.05 31.44 0.28 -3.92 16 26 H 0.13 0.09 8.14 -51.93 -0.42 -0.34 16 27 H 0.13 0.12 8.14 -51.92 -0.42 -0.31 16 28 H 0.13 0.02 8.14 -51.92 -0.42 -0.40 16 29 H 0.42 1.73 8.62 -34.47 -0.30 1.44 16 30 H 0.09 0.34 7.69 -51.92 -0.40 -0.06 16 31 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 32 H 0.09 0.78 7.99 -51.92 -0.41 0.37 16 33 H 0.10 0.92 7.99 -51.93 -0.42 0.50 16 34 H 0.39 1.61 8.49 -40.82 -0.35 1.27 16 35 H 0.40 3.34 8.84 -40.82 -0.36 2.98 16 36 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 37 H 0.16 2.38 8.06 -52.49 -0.42 1.96 16 38 H 0.04 1.00 7.94 -51.93 -0.41 0.59 16 39 H 0.04 0.96 8.00 -51.93 -0.42 0.54 16 40 H 0.27 7.75 7.22 -40.82 -0.29 7.46 16 LS Contribution 371.91 15.07 5.60 5.60 Total: -1.00 -43.63 371.91 -11.63 -55.25 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -5.10 Total: -0.69 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -1.91 Total: -4.39 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.34 Total: -57.16 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -2.05 Total: -19.77 kcal Atomic # 14 Polarization: 26.29 SS G_CDS: -5.08 Total: 21.21 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -3.43 Total: -0.05 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -43.63 -11.63 -55.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321910247.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.568 kcal (2) G-P(sol) polarization free energy of solvation -43.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds