Wall clock time and date at job start Wed Apr 1 2020 04:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42100 * 110.54180 * 2 1 4 4 O 1.42096 * 110.54471 * 223.25536 * 2 1 3 5 5 N 1.65594 * 104.45165 * 111.62426 * 2 1 3 6 6 C 1.46505 * 119.99839 * 64.99981 * 5 2 1 7 7 C 1.52997 * 109.47196 * 164.99652 * 6 5 2 8 8 N 1.46505 * 109.47196 * 179.97438 * 7 6 5 9 9 C 1.34769 * 119.99807 * 180.02562 * 8 7 6 10 10 S 1.71200 * 120.00350 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99789 * 179.97438 * 9 8 7 12 12 C 1.40148 * 119.99997 * 185.11440 * 11 9 8 13 13 C 1.40409 * 125.97469 * 174.94245 * 12 11 9 14 14 C 1.35242 * 107.86704 * 179.71805 * 13 12 11 15 15 N 1.34960 * 107.85839 * 0.42197 * 14 13 12 16 16 C 1.46503 * 125.97168 * 179.83982 * 15 14 13 17 17 C 1.50699 * 109.47187 * 124.71443 * 16 15 14 18 18 H 1.08005 * 120.00165 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00129 * 180.02562 * 17 16 15 20 20 N 1.31507 * 119.99748 * 359.72250 * 19 17 16 21 21 Si 1.86800 * 120.00086 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47275 * 179.72497 * 21 19 17 23 23 H 1.48504 * 109.47166 * 299.72439 * 21 19 17 24 24 H 1.48500 * 109.47237 * 59.72267 * 21 19 17 25 25 N 1.31218 * 125.97315 * 354.91511 * 12 11 9 26 26 H 1.08997 * 109.46773 * 308.37488 * 1 2 3 27 27 H 1.09003 * 109.46984 * 68.37459 * 1 2 3 28 28 H 1.09002 * 109.46777 * 188.37437 * 1 2 3 29 29 H 0.96995 * 120.00642 * 245.00199 * 5 2 1 30 30 H 1.09010 * 109.46797 * 45.00247 * 6 5 2 31 31 H 1.08999 * 109.47435 * 284.99953 * 6 5 2 32 32 H 1.09010 * 109.46762 * 60.00573 * 7 6 5 33 33 H 1.08999 * 109.47485 * 300.00910 * 7 6 5 34 34 H 0.96997 * 119.99701 * 0.02562 * 8 7 6 35 35 H 0.96997 * 120.00027 * 5.11561 * 11 9 8 36 36 H 1.08004 * 126.06485 * 359.97330 * 13 12 11 37 37 H 1.07996 * 126.06717 * 180.29268 * 14 13 12 38 38 H 1.09003 * 109.47217 * 4.71523 * 16 15 14 39 39 H 1.08999 * 109.47147 * 244.71556 * 16 15 14 40 40 H 0.96993 * 120.00553 * 0.27902 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9691 -0.9118 5 7 2.2273 -0.5909 1.4907 6 6 1.8909 -1.9706 1.8507 7 6 2.6877 -2.3831 3.0900 8 7 2.3508 -3.7626 3.4504 9 6 2.9351 -4.3421 4.5176 10 16 4.0705 -3.4661 5.4527 11 7 2.6248 -5.6110 4.8495 12 6 3.1494 -6.1778 6.0190 13 6 2.8332 -7.4446 6.5353 14 6 3.5503 -7.6218 7.6682 15 7 4.2861 -6.5087 7.8705 16 6 5.2050 -6.2758 8.9875 17 6 6.5700 -5.9289 8.4512 18 1 6.7365 -5.8866 7.3849 19 6 7.6066 -5.6666 9.3217 20 7 7.4027 -5.7139 10.6201 21 14 9.2983 -5.2360 8.6569 22 1 10.2282 -4.9942 9.7891 23 1 9.8064 -6.3603 7.8305 24 1 9.2052 -4.0111 7.8226 25 7 4.0223 -5.6174 6.8226 26 1 -0.3633 0.6380 0.8056 27 1 -0.3633 0.3787 -0.9554 28 1 -0.3633 -1.0167 0.1497 29 1 2.6921 -0.0237 2.1255 30 1 2.1395 -2.6334 1.0217 31 1 0.8244 -2.0406 2.0646 32 1 2.4391 -1.7204 3.9190 33 1 3.7542 -2.3131 2.8762 34 1 1.7072 -4.2588 2.9208 35 1 2.0384 -6.1319 4.2789 36 1 2.1432 -8.1537 6.1021 37 1 3.5350 -8.4975 8.2999 38 1 5.2724 -7.1773 9.5966 39 1 4.8342 -5.4521 9.5974 40 1 6.5242 -5.9371 10.9653 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321910247.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:06 Heat of formation + Delta-G solvation = 8.204065 kcal Electronic energy + Delta-G solvation = -24764.325590 eV Core-core repulsion = 20868.824855 eV Total energy + Delta-G solvation = -3895.500735 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.087 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.06245 -40.04032 -38.20976 -37.54629 -37.01190 -35.99172 -35.23608 -32.62981 -30.86675 -30.26262 -29.75653 -28.03437 -25.56996 -24.72170 -24.08820 -22.21452 -21.75432 -20.47242 -19.45270 -19.11233 -18.87902 -18.31465 -17.40261 -17.33642 -17.04777 -16.77841 -16.37873 -16.09113 -15.85693 -15.64783 -15.56517 -15.19426 -14.84125 -14.16147 -13.95972 -13.94048 -13.85012 -13.58459 -13.45885 -13.24013 -13.17536 -13.09814 -12.97913 -12.71400 -12.57316 -12.08316 -11.97401 -11.95779 -11.47484 -11.37170 -10.86524 -10.64812 -10.45888 -9.70728 -9.34723 -8.93706 -8.70234 -8.08691 -6.46690 -0.68892 0.10754 0.81560 1.18703 1.33472 1.48853 1.57516 1.72007 1.78358 2.09785 2.14836 2.49767 2.60714 2.92499 3.06292 3.27929 3.50663 3.87879 4.02323 4.07673 4.16486 4.22414 4.35651 4.49639 4.55435 4.66875 4.77926 4.79627 4.80260 4.95021 5.00150 5.03536 5.22202 5.61089 5.83741 5.97783 5.98994 6.07662 6.30548 6.39077 6.53274 7.15520 7.27245 8.64457 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.015298 B = 0.002146 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.866586 B =13045.780051 C =14443.354880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 2.625 3.375 3 O -1.004 7.004 4 O -1.001 7.001 5 N -1.118 6.118 6 C 0.107 3.893 7 C 0.117 3.883 8 N -0.650 5.650 9 C 0.561 3.439 10 S -0.657 6.657 11 N -0.565 5.565 12 C 0.230 3.770 13 C -0.281 4.281 14 C 0.047 3.953 15 N -0.365 5.365 16 C 0.263 3.737 17 C -0.606 4.606 18 H 0.038 0.962 19 C -0.021 4.021 20 N -0.926 5.926 21 Si 1.115 2.885 22 H -0.272 1.272 23 H -0.267 1.267 24 H -0.287 1.287 25 N -0.243 5.243 26 H 0.149 0.851 27 H 0.144 0.856 28 H 0.155 0.845 29 H 0.425 0.575 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.424 0.576 35 H 0.436 0.564 36 H 0.189 0.811 37 H 0.197 0.803 38 H 0.052 0.948 39 H 0.006 0.994 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.032 3.022 -23.062 33.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.803 4.803 2 S 2.722 3.278 3 O -0.994 6.994 4 O -0.991 6.991 5 N -0.878 5.878 6 C -0.020 4.020 7 C -0.009 4.009 8 N -0.283 5.283 9 C 0.199 3.801 10 S -0.531 6.531 11 N -0.195 5.195 12 C -0.028 4.028 13 C -0.313 4.313 14 C -0.101 4.101 15 N -0.146 5.146 16 C 0.142 3.858 17 C -0.644 4.644 18 H 0.057 0.943 19 C -0.220 4.220 20 N -0.563 5.563 21 Si 0.937 3.063 22 H -0.196 1.196 23 H -0.192 1.192 24 H -0.213 1.213 25 N -0.071 5.071 26 H 0.168 0.832 27 H 0.162 0.838 28 H 0.173 0.827 29 H 0.260 0.740 30 H 0.114 0.886 31 H 0.134 0.866 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.266 0.734 35 H 0.279 0.721 36 H 0.206 0.794 37 H 0.214 0.786 38 H 0.070 0.930 39 H 0.024 0.976 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.401 5.288 -22.480 30.814 hybrid contribution -3.119 -1.618 -0.507 3.550 sum -23.520 3.670 -22.987 33.092 Atomic orbital electron populations 1.30311 1.22371 1.14075 1.13514 1.04192 0.79399 0.72096 0.72158 1.93583 1.80254 1.39605 1.85969 1.93572 1.79378 1.62629 1.63488 1.55301 1.75278 1.20761 1.36493 1.21521 1.01006 0.82726 0.96782 1.21841 1.01227 0.79621 0.98190 1.44380 1.42439 1.15647 1.25808 1.21747 0.86954 0.85084 0.86298 1.94263 1.37971 1.63882 1.56990 1.41231 1.46881 1.09803 1.21588 1.19570 0.98819 0.94334 0.90030 1.21161 1.12363 0.97458 1.00272 1.23183 0.94119 0.93256 0.99493 1.49688 1.32405 1.12454 1.20085 1.19231 0.87438 0.96590 0.82523 1.22227 0.95472 1.52006 0.94742 0.94348 1.27129 1.07590 0.93342 0.93989 1.70933 1.25544 1.46635 1.13213 0.82941 0.71110 0.77112 0.75166 1.19626 1.19242 1.21342 1.80047 1.16465 1.12384 0.98198 0.83218 0.83809 0.82702 0.73989 0.88644 0.86637 0.89325 0.90870 0.73442 0.72074 0.79376 0.78587 0.93050 0.97622 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 0.60 10.89 113.37 1.23 1.83 16 2 S 2.63 24.75 6.10 -56.49 -0.34 24.40 16 3 O -1.00 -19.11 18.08 -127.65 -2.31 -21.41 16 4 O -1.00 -17.70 17.50 -127.65 -2.23 -19.93 16 5 N -1.12 -8.35 5.89 -187.47 -1.10 -9.45 16 6 C 0.11 0.50 6.25 86.38 0.54 1.04 16 7 C 0.12 1.57 5.27 86.38 0.46 2.03 16 8 N -0.65 -8.65 5.56 -350.15 -1.95 -10.59 16 9 C 0.56 14.96 7.95 179.06 1.42 16.38 16 10 S -0.66 -28.84 25.81 -56.49 -1.46 -30.30 16 11 N -0.57 -13.30 5.45 -194.02 -1.06 -14.36 16 12 C 0.23 8.03 7.76 133.33 1.04 9.06 16 13 C -0.28 -8.05 10.83 22.11 0.24 -7.81 16 14 C 0.05 1.64 11.43 83.52 0.96 2.59 16 15 N -0.36 -17.14 3.67 -351.84 -1.29 -18.43 16 16 C 0.26 14.16 5.57 85.63 0.48 14.63 16 17 C -0.61 -36.84 9.24 25.60 0.24 -36.60 16 18 H 0.04 2.49 7.81 -2.91 -0.02 2.47 16 19 C -0.02 -1.28 5.46 84.66 0.46 -0.82 16 20 N -0.93 -57.01 13.65 21.45 0.29 -56.72 16 21 Si 1.11 54.27 29.90 68.60 2.05 56.32 16 22 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 25 N -0.24 -11.57 9.05 -54.46 -0.49 -12.06 16 26 H 0.15 -0.52 8.14 -2.39 -0.02 -0.54 16 27 H 0.14 -0.35 8.14 -2.39 -0.02 -0.37 16 28 H 0.15 -0.88 8.14 -2.39 -0.02 -0.90 16 29 H 0.42 3.41 8.62 -96.75 -0.83 2.58 16 30 H 0.10 0.38 7.69 -2.38 -0.02 0.36 16 31 H 0.12 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H 0.09 1.42 7.99 -2.38 -0.02 1.41 16 33 H 0.07 1.43 7.99 -2.39 -0.02 1.41 16 34 H 0.42 1.16 8.49 -92.71 -0.79 0.38 16 35 H 0.44 4.86 8.84 -92.71 -0.82 4.04 16 36 H 0.19 3.33 8.06 -2.91 -0.02 3.31 16 37 H 0.20 5.18 8.06 -2.91 -0.02 5.15 16 38 H 0.05 2.61 7.94 -2.39 -0.02 2.59 16 39 H 0.01 0.35 8.00 -2.39 -0.02 0.33 16 40 H 0.26 15.76 7.22 -92.71 -0.67 15.09 16 Total: -1.00 -105.87 371.91 -4.06 -109.94 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -1.23 Total: 0.26 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 7.06 Total: 2.34 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -5.60 Total: -121.61 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -4.54 Total: -41.35 kcal Atomic # 14 Polarization: 54.27 SS G_CDS: 2.05 Total: 56.32 kcal Atomic # 16 Polarization: -4.09 SS G_CDS: -1.80 Total: -5.89 kcal Total: -105.87 -4.06 -109.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321910247.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.143 kcal (2) G-P(sol) polarization free energy of solvation -105.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -109.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds