Wall clock time and date at job start Wed Apr 1 2020 04:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.33305 * 119.99989 * 2 1 4 4 H 1.08003 * 120.00121 * 158.97901 * 3 2 1 5 5 C 1.46785 * 120.00184 * 338.98729 * 3 2 1 6 6 N 1.29315 * 119.99751 * 348.87001 * 5 3 2 7 7 Si 1.86801 * 120.00150 * 168.87839 * 5 3 2 8 8 H 1.48495 * 109.47413 * 89.99516 * 7 5 3 9 9 H 1.48497 * 109.46904 * 209.99681 * 7 5 3 10 10 H 1.48497 * 109.46961 * 329.99376 * 7 5 3 11 11 C 1.34773 * 119.99967 * 179.97438 * 2 1 3 12 12 O 1.21503 * 119.99984 * 185.12155 * 11 2 1 13 13 C 1.47483 * 120.00007 * 5.12781 * 11 2 1 14 14 C 1.39846 * 120.08229 * 33.47883 * 13 11 2 15 15 C 1.37646 * 119.90414 * 179.74593 * 14 13 11 16 16 C 1.39118 * 120.09171 * 0.55234 * 15 14 13 17 17 N 1.39749 * 119.91694 * 179.71823 * 16 15 14 18 18 C 1.33872 * 122.76391 * 269.43821 * 17 16 15 19 19 O 1.21217 * 125.39915 * 359.97438 * 18 17 16 20 20 C 1.51314 * 109.20554 * 179.84044 * 18 17 16 21 21 C 1.54232 * 103.55696 * 0.38696 * 20 18 17 22 22 C 1.33882 * 122.75846 * 89.72754 * 17 16 15 23 23 O 1.21219 * 125.39639 * 0.02562 * 22 17 16 24 24 C 1.39080 * 120.16998 * 359.44917 * 16 15 14 25 25 N 1.48020 * 119.95556 * 180.25088 * 24 16 15 26 26 O 1.31702 * 119.99997 * 179.97438 * 25 24 16 27 27 O 1.31698 * 119.99797 * 359.97438 * 25 24 16 28 28 C 1.37682 * 120.08748 * 0.27216 * 24 16 15 29 29 H 1.08994 * 109.46686 * 213.25242 * 1 2 3 30 30 H 1.09002 * 109.46792 * 333.25216 * 1 2 3 31 31 H 1.08999 * 109.47014 * 93.25042 * 1 2 3 32 32 H 0.97006 * 120.00166 * 180.02562 * 6 5 3 33 33 H 1.07999 * 120.04512 * 0.04507 * 14 13 11 34 34 H 1.08003 * 119.95620 * 180.27665 * 15 14 13 35 35 H 1.09007 * 110.79990 * 241.78189 * 20 18 17 36 36 H 1.09002 * 110.55200 * 118.87860 * 20 18 17 37 37 H 1.09001 * 110.60476 * 241.26128 * 21 20 18 38 38 H 1.08997 * 110.73438 * 118.35581 * 21 20 18 39 39 H 1.08002 * 120.04276 * 179.97438 * 28 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1316 1.1545 0.0000 4 1 3.1577 1.1856 0.3355 5 6 1.4709 2.3834 -0.4558 6 7 0.3270 2.3183 -1.0554 7 14 2.2826 4.0414 -0.1700 8 1 3.1505 4.3740 -1.3281 9 1 1.2369 5.0849 -0.0192 10 1 3.1056 3.9833 1.0647 11 6 2.1390 -1.1672 0.0005 12 8 3.3503 -1.1692 0.0945 13 6 1.4060 -2.4419 -0.1131 14 6 0.2369 -2.5126 -0.8773 15 6 -0.4414 -3.7054 -0.9850 16 6 0.0281 -4.8369 -0.3257 17 7 -0.6667 -6.0447 -0.4329 18 6 -1.6324 -6.4033 0.4221 19 8 -2.0131 -5.7464 1.3671 20 6 -2.1757 -7.7571 0.0201 21 6 -1.3408 -8.1271 -1.2229 22 6 -0.4175 -6.9408 -1.3958 23 8 0.4161 -6.8211 -2.2677 24 6 1.1904 -4.7706 0.4353 25 7 1.6888 -5.9787 1.1302 26 8 2.7895 -5.9170 1.8507 27 8 1.0314 -7.1153 1.0281 28 6 1.8777 -3.5825 0.5433 29 1 -0.3632 -0.8594 0.5635 30 1 -0.3633 0.9177 0.4625 31 1 -0.3633 -0.0583 -1.0260 32 1 -0.1095 3.1304 -1.3570 33 1 -0.1305 -1.6336 -1.3860 34 1 -1.3419 -3.7620 -1.5786 35 1 -3.2334 -7.6896 -0.2345 36 1 -2.0198 -8.4840 0.8172 37 1 -1.9833 -8.2436 -2.0957 38 1 -0.7674 -9.0369 -1.0457 39 1 2.7800 -3.5317 1.1348 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326440111.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:33 Heat of formation + Delta-G solvation = -0.448954 kcal Electronic energy + Delta-G solvation = -30757.176646 eV Core-core repulsion = 26250.811115 eV Total energy + Delta-G solvation = -4506.365532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.104 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -42.51676 -40.13530 -38.88909 -38.78122 -37.67925 -36.09003 -35.14420 -34.44848 -33.73341 -32.53602 -31.74985 -30.13659 -27.16701 -26.46322 -26.20532 -25.42690 -23.48431 -22.64855 -22.57375 -20.45716 -20.11809 -18.40413 -18.19675 -17.81276 -17.43925 -17.30125 -16.62482 -16.11670 -15.89959 -15.64763 -15.40510 -15.14299 -14.45252 -14.42153 -14.37066 -14.22020 -14.17130 -13.89283 -13.69160 -13.13010 -12.91951 -12.72802 -12.29583 -11.97801 -11.69180 -11.67587 -11.50842 -11.36836 -11.18108 -11.11835 -10.93417 -10.75957 -10.66263 -10.61480 -10.37232 -10.16426 -9.58369 -9.43353 -9.15695 -8.70882 -8.35550 -6.99128 -4.02673 -0.69116 0.59229 1.10482 1.15110 1.32295 2.11712 2.43825 2.77979 2.97371 3.01282 3.02882 3.74059 3.81923 3.88451 3.90755 4.14513 4.19904 4.32124 4.53278 4.59544 4.69990 4.79223 4.92777 5.02470 5.10912 5.18371 5.29617 5.30308 5.57907 5.65714 5.75358 5.86946 5.94765 6.14581 6.35652 6.39294 6.44038 6.73271 6.80677 6.85127 7.05928 7.53034 7.62388 8.00541 8.72456 8.94384 9.67482 10.00858 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.019333 B = 0.003026 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.976723 B = 9250.909765 C = 9893.302227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.388 5.388 3 C -0.326 4.326 4 H 0.115 0.885 5 C 0.042 3.958 6 N -0.824 5.824 7 Si 0.937 3.063 8 H -0.269 1.269 9 H -0.277 1.277 10 H -0.260 1.260 11 C 0.431 3.569 12 O -0.588 6.588 13 C -0.068 4.068 14 C -0.058 4.058 15 C -0.095 4.095 16 C 0.153 3.847 17 N -0.529 5.529 18 C 0.537 3.463 19 O -0.474 6.474 20 C -0.148 4.148 21 C -0.148 4.148 22 C 0.536 3.464 23 O -0.474 6.474 24 C 0.005 3.995 25 N -0.006 5.006 26 O -0.161 6.161 27 O -0.193 6.193 28 C -0.008 4.008 29 H 0.039 0.961 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.285 0.715 33 H 0.166 0.834 34 H 0.150 0.850 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.279 -13.319 -1.909 17.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.099 5.099 3 C -0.455 4.455 4 H 0.133 0.867 5 C -0.173 4.173 6 N -0.456 5.456 7 Si 0.762 3.238 8 H -0.195 1.195 9 H -0.202 1.202 10 H -0.184 1.184 11 C 0.223 3.777 12 O -0.476 6.476 13 C -0.074 4.074 14 C -0.079 4.079 15 C -0.115 4.115 16 C 0.061 3.939 17 N -0.270 5.270 18 C 0.327 3.673 19 O -0.344 6.344 20 C -0.187 4.187 21 C -0.187 4.187 22 C 0.326 3.674 23 O -0.344 6.344 24 C -0.083 4.083 25 N 0.472 4.528 26 O -0.357 6.357 27 O -0.383 6.383 28 C -0.029 4.029 29 H 0.057 0.943 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.183 0.817 34 H 0.168 0.832 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -10.877 -12.188 -2.217 16.485 hybrid contribution 0.331 0.439 0.253 0.606 sum -10.545 -11.748 -1.964 15.909 Atomic orbital electron populations 1.22104 0.81143 1.01380 1.01025 1.42558 1.05852 1.05139 1.56375 1.20830 0.99379 0.83326 1.41966 0.86696 1.27077 0.95378 1.00983 0.93839 1.68973 1.15422 1.31739 1.29477 0.85733 0.79199 0.78786 0.80119 1.19459 1.20235 1.18392 1.17297 0.87182 0.82274 0.90909 1.90633 1.12809 1.85686 1.58489 1.20472 0.94607 0.95535 0.96767 1.22237 0.92697 0.98267 0.94654 1.21139 1.01070 0.90325 0.98973 1.17175 0.91071 0.86967 0.98715 1.44239 1.35374 1.17364 1.30071 1.20941 0.77504 0.88309 0.80551 1.90797 1.59507 1.58086 1.26036 1.22414 1.02199 0.94463 0.99655 1.22417 0.98268 0.97930 1.00107 1.20962 0.83285 0.84030 0.79113 1.90803 1.32885 1.77596 1.33076 1.20325 0.98948 0.85005 1.04008 1.50233 1.00863 1.03191 0.98509 1.96290 1.08742 1.93484 1.37186 1.96157 1.57409 1.15099 1.69615 1.21136 0.98690 0.88068 0.95054 0.94282 0.89563 0.91911 0.90254 0.81700 0.83235 0.85924 0.85555 0.85962 0.85530 0.81557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.67 7.12 59.85 0.43 2.09 16 2 N -0.39 -9.02 2.93 -121.83 -0.36 -9.38 16 3 C -0.33 -8.14 9.55 -13.46 -0.13 -8.27 16 4 H 0.12 3.06 7.38 -52.48 -0.39 2.67 16 5 C 0.04 0.95 5.25 -15.16 -0.08 0.87 16 6 N -0.82 -18.29 10.63 56.00 0.60 -17.70 16 7 Si 0.94 17.88 29.66 -169.99 -5.04 12.84 16 8 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 9 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 10 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 11 C 0.43 10.09 7.31 -12.50 -0.09 10.00 16 12 O -0.59 -15.95 16.40 5.36 0.09 -15.86 16 13 C -0.07 -1.31 5.23 -104.95 -0.55 -1.85 16 14 C -0.06 -0.91 7.72 -39.20 -0.30 -1.21 16 15 C -0.10 -1.34 9.95 -39.47 -0.39 -1.73 16 16 C 0.15 2.44 4.76 -83.61 -0.40 2.04 16 17 N -0.53 -7.18 1.32 -59.39 -0.08 -7.25 16 18 C 0.54 6.54 6.91 -11.09 -0.08 6.46 16 19 O -0.47 -7.47 17.65 5.61 0.10 -7.37 16 20 C -0.15 -0.90 7.03 -26.94 -0.19 -1.09 16 21 C -0.15 -0.91 7.03 -26.94 -0.19 -1.10 16 22 C 0.54 6.60 6.94 -11.08 -0.08 6.53 16 23 O -0.47 -7.61 17.65 5.61 0.10 -7.51 16 24 C 0.01 0.09 6.89 -79.84 -0.55 -0.46 16 25 N -0.01 -0.12 4.98 34.02 0.17 0.05 16 26 O -0.16 -3.13 19.14 -31.57 -0.60 -3.74 16 27 O -0.19 -3.40 16.05 -31.57 -0.51 -3.91 16 28 C -0.01 -0.16 9.12 -39.20 -0.36 -0.52 16 29 H 0.04 0.66 6.27 -51.93 -0.33 0.33 16 30 H 0.09 1.75 6.54 -51.93 -0.34 1.41 16 31 H 0.06 1.15 6.22 -51.93 -0.32 0.83 16 32 H 0.29 5.84 8.26 -40.82 -0.34 5.50 16 33 H 0.17 2.41 5.07 -52.49 -0.27 2.14 16 34 H 0.15 1.58 8.06 -52.48 -0.42 1.16 16 35 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.13 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.12 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.13 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.17 3.17 7.48 -52.49 -0.39 2.78 16 LS Contribution 346.39 15.07 5.22 5.22 Total: -1.00 -33.26 346.39 -6.55 -39.81 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -3.28 Total: 3.04 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: -2.96 Total: 11.75 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.33 Total: -34.27 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -0.82 Total: -38.38 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.04 Total: 12.84 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.26 -6.55 -39.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326440111.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.359 kcal (2) G-P(sol) polarization free energy of solvation -33.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds