Wall clock time and date at job start Wed Apr 1 2020 04:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.33305 * 119.99989 * 2 1 4 4 H 1.08003 * 120.00121 * 158.97901 * 3 2 1 5 5 C 1.46785 * 120.00184 * 338.98729 * 3 2 1 6 6 N 1.29315 * 119.99751 * 348.87001 * 5 3 2 7 7 Si 1.86801 * 120.00150 * 168.87839 * 5 3 2 8 8 H 1.48495 * 109.47413 * 89.99516 * 7 5 3 9 9 H 1.48497 * 109.46904 * 209.99681 * 7 5 3 10 10 H 1.48497 * 109.46961 * 329.99376 * 7 5 3 11 11 C 1.34773 * 119.99967 * 179.97438 * 2 1 3 12 12 O 1.21503 * 119.99984 * 185.12155 * 11 2 1 13 13 C 1.47483 * 120.00007 * 5.12781 * 11 2 1 14 14 C 1.39846 * 120.08229 * 33.47883 * 13 11 2 15 15 C 1.37646 * 119.90414 * 179.74593 * 14 13 11 16 16 C 1.39118 * 120.09171 * 0.55234 * 15 14 13 17 17 N 1.39749 * 119.91694 * 179.71823 * 16 15 14 18 18 C 1.33872 * 122.76391 * 269.43821 * 17 16 15 19 19 O 1.21217 * 125.39915 * 359.97438 * 18 17 16 20 20 C 1.51314 * 109.20554 * 179.84044 * 18 17 16 21 21 C 1.54232 * 103.55696 * 0.38696 * 20 18 17 22 22 C 1.33882 * 122.75846 * 89.72754 * 17 16 15 23 23 O 1.21219 * 125.39639 * 0.02562 * 22 17 16 24 24 C 1.39080 * 120.16998 * 359.44917 * 16 15 14 25 25 N 1.48020 * 119.95556 * 180.25088 * 24 16 15 26 26 O 1.31702 * 119.99997 * 179.97438 * 25 24 16 27 27 O 1.31698 * 119.99797 * 359.97438 * 25 24 16 28 28 C 1.37682 * 120.08748 * 0.27216 * 24 16 15 29 29 H 1.08994 * 109.46686 * 213.25242 * 1 2 3 30 30 H 1.09002 * 109.46792 * 333.25216 * 1 2 3 31 31 H 1.08999 * 109.47014 * 93.25042 * 1 2 3 32 32 H 0.97006 * 120.00166 * 180.02562 * 6 5 3 33 33 H 1.07999 * 120.04512 * 0.04507 * 14 13 11 34 34 H 1.08003 * 119.95620 * 180.27665 * 15 14 13 35 35 H 1.09007 * 110.79990 * 241.78189 * 20 18 17 36 36 H 1.09002 * 110.55200 * 118.87860 * 20 18 17 37 37 H 1.09001 * 110.60476 * 241.26128 * 21 20 18 38 38 H 1.08997 * 110.73438 * 118.35581 * 21 20 18 39 39 H 1.08002 * 120.04276 * 179.97438 * 28 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1316 1.1545 0.0000 4 1 3.1577 1.1856 0.3355 5 6 1.4709 2.3834 -0.4558 6 7 0.3270 2.3183 -1.0554 7 14 2.2826 4.0414 -0.1700 8 1 3.1505 4.3740 -1.3281 9 1 1.2369 5.0849 -0.0192 10 1 3.1056 3.9833 1.0647 11 6 2.1390 -1.1672 0.0005 12 8 3.3503 -1.1692 0.0945 13 6 1.4060 -2.4419 -0.1131 14 6 0.2369 -2.5126 -0.8773 15 6 -0.4414 -3.7054 -0.9850 16 6 0.0281 -4.8369 -0.3257 17 7 -0.6667 -6.0447 -0.4329 18 6 -1.6324 -6.4033 0.4221 19 8 -2.0131 -5.7464 1.3671 20 6 -2.1757 -7.7571 0.0201 21 6 -1.3408 -8.1271 -1.2229 22 6 -0.4175 -6.9408 -1.3958 23 8 0.4161 -6.8211 -2.2677 24 6 1.1904 -4.7706 0.4353 25 7 1.6888 -5.9787 1.1302 26 8 2.7895 -5.9170 1.8507 27 8 1.0314 -7.1153 1.0281 28 6 1.8777 -3.5825 0.5433 29 1 -0.3632 -0.8594 0.5635 30 1 -0.3633 0.9177 0.4625 31 1 -0.3633 -0.0583 -1.0260 32 1 -0.1095 3.1304 -1.3570 33 1 -0.1305 -1.6336 -1.3860 34 1 -1.3419 -3.7620 -1.5786 35 1 -3.2334 -7.6896 -0.2345 36 1 -2.0198 -8.4840 0.8172 37 1 -1.9833 -8.2436 -2.0957 38 1 -0.7674 -9.0369 -1.0457 39 1 2.7800 -3.5317 1.1348 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326440111.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:32 Heat of formation + Delta-G solvation = -22.330559 kcal Electronic energy + Delta-G solvation = -30758.125504 eV Core-core repulsion = 26250.811115 eV Total energy + Delta-G solvation = -4507.314389 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.104 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.54515 -41.59522 -40.48463 -39.81008 -39.19990 -37.17505 -36.93950 -35.90314 -34.82142 -34.14311 -33.22389 -31.37398 -28.75672 -27.71705 -27.19413 -27.03170 -24.94173 -23.98260 -23.43921 -21.84778 -21.46273 -19.85528 -19.57632 -19.20677 -19.11518 -18.31536 -17.72858 -17.61782 -17.31981 -16.97153 -16.80135 -16.47351 -16.06655 -15.77783 -15.64240 -15.40181 -15.21314 -15.00723 -14.60676 -14.40486 -14.31861 -13.94018 -13.72017 -13.39141 -13.30222 -13.11430 -12.88698 -12.67916 -12.61252 -12.49380 -12.18652 -12.13872 -12.06009 -11.88472 -11.41704 -11.35140 -11.14920 -10.93868 -10.72079 -10.43278 -10.11156 -8.69853 -5.92436 -2.13332 -0.81334 -0.35788 -0.25925 0.41787 1.11171 1.24311 1.40342 1.49016 1.52647 1.54647 2.15567 2.19354 2.63483 2.85672 2.90782 3.18052 3.28474 3.29402 3.40436 3.47731 3.59738 3.63698 3.82705 4.17863 4.25236 4.28426 4.34070 4.42121 4.48481 4.71201 4.79644 4.83112 4.94165 4.96302 4.99994 5.09229 5.20089 5.31587 5.53150 5.81361 6.17228 6.24228 6.56688 6.96012 7.18843 7.90137 8.29771 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.019333 B = 0.003026 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.976723 B = 9250.909765 C = 9893.302227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.396 5.396 3 C -0.390 4.390 4 H 0.078 0.922 5 C 0.025 3.975 6 N -0.832 5.832 7 Si 0.994 3.006 8 H -0.270 1.270 9 H -0.255 1.255 10 H -0.272 1.272 11 C 0.418 3.582 12 O -0.642 6.642 13 C -0.084 4.084 14 C -0.029 4.029 15 C -0.084 4.084 16 C 0.168 3.832 17 N -0.541 5.541 18 C 0.527 3.473 19 O -0.517 6.517 20 C -0.130 4.130 21 C -0.130 4.130 22 C 0.526 3.474 23 O -0.519 6.519 24 C -0.013 4.013 25 N -0.010 5.010 26 O -0.219 6.219 27 O -0.142 6.142 28 C -0.017 4.017 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.296 0.704 33 H 0.184 0.816 34 H 0.199 0.801 35 H 0.165 0.835 36 H 0.148 0.852 37 H 0.164 0.836 38 H 0.148 0.852 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.762 -15.912 -3.560 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.107 5.107 3 C -0.518 4.518 4 H 0.096 0.904 5 C -0.189 4.189 6 N -0.463 5.463 7 Si 0.816 3.184 8 H -0.195 1.195 9 H -0.179 1.179 10 H -0.197 1.197 11 C 0.211 3.789 12 O -0.534 6.534 13 C -0.088 4.088 14 C -0.049 4.049 15 C -0.103 4.103 16 C 0.075 3.925 17 N -0.283 5.283 18 C 0.321 3.679 19 O -0.390 6.390 20 C -0.169 4.169 21 C -0.169 4.169 22 C 0.320 3.680 23 O -0.392 6.392 24 C -0.101 4.101 25 N 0.468 4.532 26 O -0.399 6.399 27 O -0.347 6.347 28 C -0.039 4.039 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.200 0.800 34 H 0.216 0.784 35 H 0.183 0.817 36 H 0.166 0.834 37 H 0.182 0.818 38 H 0.166 0.834 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.300 -14.733 -3.813 21.580 hybrid contribution 1.490 0.861 0.676 1.849 sum -13.810 -13.872 -3.137 19.824 Atomic orbital electron populations 1.22146 0.78918 1.01802 1.01983 1.42640 1.07205 1.04500 1.56316 1.20568 0.99134 0.85295 1.46837 0.90440 1.27635 0.95814 1.02659 0.92799 1.68948 1.15489 1.33028 1.28800 0.84937 0.78675 0.75608 0.79190 1.19521 1.17892 1.19678 1.17902 0.86954 0.83718 0.90299 1.90566 1.15382 1.86900 1.60519 1.20137 0.96321 0.93518 0.98854 1.22444 0.90467 0.99693 0.92297 1.21633 1.01908 0.88532 0.98190 1.17687 0.89655 0.89214 0.95913 1.44871 1.35594 1.16608 1.31271 1.22183 0.76423 0.90014 0.79308 1.90791 1.60671 1.59756 1.27760 1.22646 1.04052 0.90237 0.99954 1.22650 0.97340 0.95144 1.01751 1.22224 0.83248 0.84933 0.77624 1.90797 1.35128 1.78526 1.34764 1.20507 0.99964 0.84475 1.05155 1.50327 1.00892 1.03416 0.98608 1.96319 1.09964 1.93801 1.39821 1.96090 1.56273 1.15062 1.67297 1.20928 0.98581 0.88815 0.95532 0.92016 0.90703 0.90634 0.89161 0.79956 0.78405 0.81744 0.83418 0.81824 0.83428 0.83456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.62 7.12 127.77 0.91 4.53 16 2 N -0.40 -19.40 2.93 -657.67 -1.93 -21.33 16 3 C -0.39 -20.85 9.55 86.71 0.83 -20.02 16 4 H 0.08 4.58 7.38 -2.91 -0.02 4.56 16 5 C 0.03 1.17 5.25 87.30 0.46 1.63 16 6 N -0.83 -36.78 10.63 23.26 0.25 -36.53 16 7 Si 0.99 37.45 29.66 68.60 2.03 39.49 16 8 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 9 H -0.26 -8.64 7.11 99.48 0.71 -7.94 16 10 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 11 C 0.42 20.98 7.31 86.68 0.63 21.61 16 12 O -0.64 -38.10 16.40 -3.72 -0.06 -38.16 16 13 C -0.08 -3.31 5.23 -20.07 -0.11 -3.41 16 14 C -0.03 -0.88 7.72 22.52 0.17 -0.70 16 15 C -0.08 -2.08 9.95 22.34 0.22 -1.86 16 16 C 0.17 5.00 4.76 38.29 0.18 5.19 16 17 N -0.54 -12.73 1.32 -579.66 -0.77 -13.50 16 18 C 0.53 10.58 6.91 87.99 0.61 11.19 16 19 O -0.52 -14.76 17.65 -2.83 -0.05 -14.81 16 20 C -0.13 -0.73 7.03 30.46 0.21 -0.51 16 21 C -0.13 -0.75 7.03 30.46 0.21 -0.54 16 22 C 0.53 10.78 6.94 87.99 0.61 11.39 16 23 O -0.52 -15.30 17.65 -2.84 -0.05 -15.35 16 24 C -0.01 -0.47 6.89 36.45 0.25 -0.22 16 25 N -0.01 -0.39 4.98 -46.29 -0.23 -0.62 16 26 O -0.22 -9.07 19.14 3.51 0.07 -9.00 16 27 O -0.14 -4.71 16.05 3.52 0.06 -4.66 16 28 C -0.02 -0.69 9.12 22.52 0.21 -0.48 16 29 H 0.06 2.04 6.27 -2.39 -0.01 2.02 16 30 H 0.07 3.07 6.54 -2.39 -0.02 3.05 16 31 H 0.08 2.68 6.22 -2.39 -0.01 2.67 16 32 H 0.30 11.78 8.26 -92.70 -0.77 11.02 16 33 H 0.18 4.89 5.07 -2.91 -0.01 4.87 16 34 H 0.20 3.09 8.06 -2.91 -0.02 3.07 16 35 H 0.17 -0.29 8.14 -2.38 -0.02 -0.31 16 36 H 0.15 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.16 -0.25 8.14 -2.39 -0.02 -0.27 16 38 H 0.15 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.15 6.32 7.48 -2.91 -0.02 6.30 16 Total: -1.00 -82.18 346.39 5.88 -76.31 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 1.15 Total: 10.38 kcal Atomic # 6 Polarization: 22.38 SS G_CDS: 5.41 Total: 27.79 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: -2.68 Total: -71.98 kcal Atomic # 8 Polarization: -81.94 SS G_CDS: -0.04 Total: -81.98 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.49 kcal Total: -82.18 5.88 -76.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326440111.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.974 kcal (2) G-P(sol) polarization free energy of solvation -82.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds