Wall clock time and date at job start Wed Apr 1 2020 04:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 111.00194 * 2 1 4 4 C 1.46909 * 110.99742 * 123.95112 * 2 1 3 5 5 C 1.53005 * 109.47131 * 66.04761 * 4 2 1 6 6 C 1.52997 * 109.46880 * 180.02562 * 5 4 2 7 7 N 1.46503 * 109.46701 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00177 * 90.00320 * 7 6 5 9 9 C 1.50696 * 109.47364 * 94.61686 * 8 7 6 10 10 H 1.08001 * 119.99998 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99936 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99872 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99857 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47075 * 60.00136 * 13 11 9 15 15 H 1.48502 * 109.46946 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47148 * 299.99884 * 13 11 9 17 17 C 1.34777 * 119.99652 * 269.99727 * 7 6 5 18 18 O 1.21645 * 120.00421 * 5.52322 * 17 7 6 19 19 C 1.46992 * 119.99572 * 185.52649 * 17 7 6 20 20 S 1.77228 * 127.76060 * 6.25956 * 19 17 7 21 21 N 1.69674 * 95.31155 * 179.90884 * 20 19 17 22 22 C 1.30323 * 107.66444 * 0.36662 * 21 20 19 23 23 O 1.35979 * 120.82984 * 179.74726 * 22 21 20 24 24 C 1.37710 * 118.34040 * 359.71859 * 22 21 20 25 25 Cl 1.73602 * 122.89905 * 180.02562 * 24 22 21 26 26 H 1.08993 * 109.47600 * 296.04912 * 1 2 3 27 27 H 1.09001 * 109.46526 * 56.05203 * 1 2 3 28 28 H 1.08999 * 109.47271 * 176.04464 * 1 2 3 29 29 H 1.08999 * 109.47345 * 183.95270 * 3 2 1 30 30 H 1.09005 * 109.46669 * 303.94664 * 3 2 1 31 31 H 1.08998 * 109.46858 * 63.94981 * 3 2 1 32 32 H 1.08996 * 109.46714 * 306.04735 * 4 2 1 33 33 H 1.09001 * 109.46739 * 186.04509 * 4 2 1 34 34 H 1.09002 * 109.47181 * 59.99917 * 5 4 2 35 35 H 1.09004 * 109.46979 * 300.00035 * 5 4 2 36 36 H 1.09002 * 109.47419 * 59.99894 * 6 5 4 37 37 H 1.09004 * 109.47205 * 299.99728 * 6 5 4 38 38 H 1.09004 * 109.47027 * 214.62155 * 8 7 6 39 39 H 1.09000 * 109.46652 * 334.61575 * 8 7 6 40 40 H 0.97000 * 119.99841 * 179.97438 * 12 11 9 41 41 H 0.96705 * 114.00048 * 269.97291 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6314 -2.2427 0.9705 6 6 2.1791 -3.0402 2.1557 7 7 1.8300 -4.4541 1.9959 8 6 2.7380 -5.3568 1.2840 9 6 3.6339 -6.0531 2.2757 10 1 3.5370 -5.8437 3.3308 11 6 4.5781 -6.9566 1.8361 12 7 4.6965 -7.2111 0.5513 13 14 5.6891 -7.8191 3.0654 14 1 4.8604 -8.6010 4.0178 15 1 6.6093 -8.7343 2.3437 16 1 6.4802 -6.8081 3.8118 17 6 0.6736 -4.9242 2.5039 18 8 -0.1263 -4.1576 3.0062 19 6 0.3789 -6.3633 2.4510 20 16 1.4474 -7.6708 1.9127 21 7 0.3257 -8.9137 2.1881 22 6 -0.7666 -8.3671 2.6423 23 8 -1.8509 -9.1279 2.9497 24 6 -0.7952 -6.9998 2.8039 25 17 -2.1863 -6.1496 3.4002 26 1 -0.3634 0.4512 0.9232 27 1 -0.3632 0.5739 -0.8525 28 1 -0.3634 -1.0252 -0.0709 29 1 3.0828 1.3432 -0.0708 30 1 1.5899 1.9162 -0.8526 31 1 1.7044 1.8723 0.9233 32 1 1.5610 -0.3872 2.0628 33 1 3.0797 -0.6611 1.1757 34 1 2.0658 -2.6215 0.0453 35 1 0.5471 -2.3475 0.9324 36 1 1.7444 -2.6613 3.0807 37 1 3.2634 -2.9354 2.1942 38 1 2.1570 -6.0986 0.7359 39 1 3.3465 -4.7831 0.5850 40 1 5.3609 -7.8465 0.2419 41 1 -2.4630 -9.2566 2.2121 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361853712.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:06 Heat of formation + Delta-G solvation = -25.095468 kcal Electronic energy + Delta-G solvation = -26432.771857 eV Core-core repulsion = 22501.490688 eV Total energy + Delta-G solvation = -3931.281169 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.53994 -38.95718 -37.61862 -36.16695 -35.52232 -35.01185 -33.33820 -31.90776 -30.37217 -27.81405 -27.62690 -26.51180 -24.66555 -23.35590 -22.68898 -20.94028 -20.51011 -18.80915 -17.95729 -17.52910 -16.94698 -16.20498 -15.93968 -15.55153 -15.31383 -15.14815 -14.77844 -14.66405 -14.18982 -13.87079 -13.77395 -13.12348 -12.89397 -12.58803 -12.45471 -12.28799 -12.21429 -11.95217 -11.82658 -11.62014 -11.45823 -11.40416 -11.36024 -11.11137 -11.06195 -10.95825 -10.47160 -10.29486 -10.09839 -10.03631 -9.66383 -9.39833 -9.05219 -8.87416 -8.39622 -8.09862 -7.85684 -6.53941 -4.58157 0.60482 1.59565 2.11512 2.37532 2.86751 3.10047 3.15449 3.18215 3.44567 3.56814 3.97688 4.07012 4.37897 4.81260 5.00147 5.09740 5.14017 5.22625 5.33064 5.38434 5.51618 5.57972 5.60387 5.67546 5.72739 5.75033 5.83389 5.92996 6.04058 6.29970 6.36736 6.54347 6.73258 6.84955 6.98598 7.01451 7.19450 7.41097 7.57647 7.59556 7.94493 8.41737 8.67242 9.01917 10.49130 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.008226 B = 0.004802 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3403.118601 B = 5829.416294 C = 8639.323774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.548 5.548 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.131 4.131 6 C 0.127 3.873 7 N -0.588 5.588 8 C 0.224 3.776 9 C -0.539 4.539 10 H 0.073 0.927 11 C 0.079 3.921 12 N -0.866 5.866 13 Si 0.890 3.110 14 H -0.268 1.268 15 H -0.280 1.280 16 H -0.269 1.269 17 C 0.592 3.408 18 O -0.535 6.535 19 C -0.233 4.233 20 S 0.527 5.473 21 N -0.549 5.549 22 C 0.277 3.723 23 O -0.469 6.469 24 C -0.088 4.088 25 Cl -0.018 7.018 26 H 0.024 0.976 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.023 0.977 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.037 0.963 39 H 0.058 0.942 40 H 0.275 0.725 41 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.821 7.589 -1.504 9.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.170 4.170 6 C 0.004 3.996 7 N -0.318 5.318 8 C 0.101 3.899 9 C -0.585 4.585 10 H 0.091 0.909 11 C -0.130 4.130 12 N -0.501 5.501 13 Si 0.716 3.284 14 H -0.193 1.193 15 H -0.205 1.205 16 H -0.194 1.194 17 C 0.378 3.622 18 O -0.414 6.414 19 C -0.366 4.366 20 S 0.688 5.312 21 N -0.383 5.383 22 C 0.064 3.936 23 O -0.275 6.275 24 C -0.137 4.137 25 Cl 0.010 6.990 26 H 0.043 0.957 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -4.348 6.336 -1.949 7.927 hybrid contribution -1.328 0.678 1.555 2.154 sum -5.676 7.014 -0.394 9.031 Atomic orbital electron populations 1.22431 0.87437 1.02728 1.00054 1.61972 1.08076 1.13465 1.43644 1.22369 1.00791 0.89005 1.00173 1.22072 1.00119 0.93798 0.90951 1.21967 1.01955 0.93349 0.99761 1.21278 1.00561 0.79802 0.97999 1.47989 1.19451 1.10012 1.54388 1.19732 0.88569 0.88731 0.92896 1.21580 1.17914 1.24393 0.94631 0.90903 1.24970 0.96445 0.96003 0.95604 1.69886 1.33904 1.33068 1.13220 0.86612 0.80651 0.79821 0.81299 1.19308 1.20471 1.19439 1.16557 0.82111 0.84493 0.79051 1.90770 1.47307 1.56942 1.46400 1.25951 0.99054 1.01094 1.10475 1.87941 1.08154 0.84924 1.50179 1.76142 1.07259 1.34049 1.20808 1.18489 0.88722 0.85919 1.00509 1.84903 1.32111 1.71234 1.39241 1.21211 0.91806 0.91625 1.09041 1.98341 1.38198 1.76387 1.86088 0.95732 0.91762 0.90805 0.91343 0.91613 0.95884 0.94745 0.90576 0.90731 0.91516 0.90721 0.89829 0.94562 0.92373 0.91485 0.75191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.32 60.07 0.56 0.80 16 2 N -0.55 -6.62 5.02 -251.25 -1.26 -7.88 16 3 C 0.03 0.24 9.57 60.06 0.57 0.82 16 4 C 0.06 0.73 4.96 -3.82 -0.02 0.71 16 5 C -0.13 -1.90 5.46 -26.73 -0.15 -2.05 16 6 C 0.13 2.05 5.35 -4.04 -0.02 2.03 16 7 N -0.59 -11.25 2.47 -176.49 -0.44 -11.69 16 8 C 0.22 4.63 4.72 -5.20 -0.02 4.60 16 9 C -0.54 -12.03 6.73 -34.44 -0.23 -12.27 16 10 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 11 C 0.08 1.79 4.96 -17.82 -0.09 1.70 16 12 N -0.87 -20.44 13.29 55.43 0.74 -19.70 16 13 Si 0.89 18.47 29.54 -169.99 -5.02 13.45 16 14 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 15 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 16 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 17 C 0.59 12.08 7.60 -12.71 -0.10 11.99 16 18 O -0.53 -11.45 15.12 5.24 0.08 -11.38 16 19 C -0.23 -4.70 6.38 -36.07 -0.23 -4.93 16 20 S 0.53 10.76 17.02 -107.50 -1.83 8.93 16 21 N -0.55 -11.02 12.07 29.22 0.35 -10.67 16 22 C 0.28 5.16 7.67 -18.38 -0.14 5.02 16 23 O -0.47 -7.40 13.27 -19.67 -0.26 -7.66 16 24 C -0.09 -1.68 6.41 -39.81 -0.26 -1.94 16 25 Cl -0.02 -0.32 27.29 -51.86 -1.42 -1.74 16 26 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 28 H 0.07 0.90 6.47 -51.93 -0.34 0.56 16 29 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 30 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 31 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 33 H 0.08 0.88 8.06 -51.93 -0.42 0.46 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 1.05 6.55 -51.93 -0.34 0.71 16 36 H 0.07 1.22 7.50 -51.93 -0.39 0.83 16 37 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 38 H 0.04 0.79 5.02 -28.89 -0.15 0.65 16 39 H 0.06 1.24 8.04 -51.93 -0.42 0.82 16 40 H 0.28 6.26 8.31 -40.82 -0.34 5.92 16 41 H 0.39 4.11 9.06 45.56 0.41 4.53 16 LS Contribution 367.35 15.07 5.54 5.54 Total: -1.00 -26.40 367.35 -8.19 -34.59 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -4.55 Total: 1.72 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -0.12 Total: 6.49 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.61 Total: -49.94 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.18 Total: -19.03 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.45 kcal Atomic # 16 Polarization: 10.76 SS G_CDS: -1.83 Total: 8.93 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.42 Total: -1.74 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -26.40 -8.19 -34.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361853712.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.499 kcal (2) G-P(sol) polarization free energy of solvation -26.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds