Wall clock time and date at job start Wed Apr 1 2020 04:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86795 * 119.99626 * 2 1 4 4 H 1.48503 * 109.47107 * 240.00166 * 3 2 1 5 5 H 1.48501 * 109.47659 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47257 * 120.00261 * 3 2 1 7 7 C 1.39945 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99801 * 168.81662 * 7 2 1 9 9 C 1.41396 * 120.00096 * 348.81634 * 7 2 1 10 10 C 1.40730 * 120.24669 * 331.56335 * 9 7 2 11 11 C 1.37594 * 119.74453 * 180.31933 * 10 9 7 12 12 C 1.38648 * 120.24869 * 359.65943 * 11 10 9 13 13 C 1.38613 * 120.50424 * 0.02562 * 12 11 10 14 14 C 1.37644 * 120.24446 * 0.02562 * 13 12 11 15 15 S 1.76202 * 120.12542 * 179.97438 * 14 13 12 16 16 O 1.42097 * 106.40092 * 132.26529 * 15 14 13 17 17 O 1.42105 * 106.40327 * 359.34186 * 15 14 13 18 18 N 1.65607 * 107.21492 * 245.80265 * 15 14 13 19 19 C 1.46498 * 119.99781 * 62.82260 * 18 15 14 20 20 C 1.52998 * 109.47031 * 165.96726 * 19 18 15 21 21 C 1.50703 * 109.47571 * 180.02562 * 20 19 18 22 22 C 1.38165 * 120.02161 * 264.99970 * 21 20 19 23 23 C 1.38245 * 120.05021 * 179.97438 * 22 21 20 24 24 C 1.38287 * 120.11589 * 0.02562 * 23 22 21 25 25 C 1.38122 * 120.05021 * 0.02562 * 24 23 22 26 26 C 1.38708 * 120.02859 * 84.71713 * 21 20 19 27 27 O 1.35894 * 120.05651 * 0.02562 * 26 21 20 28 28 H 0.96999 * 120.00244 * 359.97438 * 1 2 3 29 29 H 1.08009 * 120.12716 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.87602 * 179.68569 * 11 10 9 31 31 H 1.08007 * 119.74997 * 180.02562 * 12 11 10 32 32 H 1.07999 * 119.87964 * 180.02562 * 13 12 11 33 33 H 0.96996 * 119.99880 * 242.81911 * 18 15 14 34 34 H 1.09004 * 109.47376 * 45.97214 * 19 18 15 35 35 H 1.08998 * 109.47552 * 285.96980 * 19 18 15 36 36 H 1.09005 * 109.47006 * 300.00110 * 20 19 18 37 37 H 1.09000 * 109.47325 * 59.99436 * 20 19 18 38 38 H 1.08000 * 119.97620 * 359.97438 * 22 21 20 39 39 H 1.08006 * 119.94575 * 180.02562 * 23 22 21 40 40 H 1.08000 * 119.97578 * 179.97438 * 24 23 22 41 41 H 1.08003 * 120.02178 * 179.97438 * 25 24 23 42 42 H 0.96701 * 114.00350 * 89.99728 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0726 -1.2207 -0.1819 9 6 1.3211 -2.4250 0.2364 10 6 0.1570 -2.4377 1.0271 11 6 -0.4995 -3.6250 1.2564 12 6 -0.0222 -4.8046 0.7061 13 6 1.1197 -4.8030 -0.0796 14 6 1.7932 -3.6272 -0.3215 15 16 3.2449 -3.6288 -1.3202 16 8 3.0909 -2.5687 -2.2537 17 8 3.4648 -4.9786 -1.7063 18 7 4.5135 -3.2097 -0.3416 19 6 4.8811 -4.0665 0.7883 20 6 6.2626 -3.6621 1.3068 21 6 6.6412 -4.5438 2.4688 22 6 6.3971 -4.1250 3.7626 23 6 6.7437 -4.9337 4.8290 24 6 7.3357 -6.1630 4.6039 25 6 7.5827 -6.5856 3.3123 26 6 7.2295 -5.7790 2.2401 27 8 7.4657 -6.1953 0.9682 28 1 -0.4850 0.8400 0.0004 29 1 -0.2170 -1.5197 1.4561 30 1 -1.3902 -3.6379 1.8671 31 1 -0.5441 -5.7320 0.8910 32 1 1.4824 -5.7277 -0.5036 33 1 5.0131 -2.3969 -0.5167 34 1 4.9054 -5.1066 0.4629 35 1 4.1462 -3.9523 1.5852 36 1 6.9975 -3.7764 0.5099 37 1 6.2384 -2.6220 1.6321 38 1 5.9353 -3.1652 3.9411 39 1 6.5518 -4.6048 5.8397 40 1 7.6059 -6.7927 5.4387 41 1 8.0454 -7.5456 3.1371 42 1 8.3331 -5.9399 0.6254 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363779863.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:23 Heat of formation + Delta-G solvation = -83.188806 kcal Electronic energy + Delta-G solvation = -28112.760327 eV Core-core repulsion = 24149.100140 eV Total energy + Delta-G solvation = -3963.660187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.01482 -37.57175 -36.71464 -36.20736 -35.60722 -34.78061 -33.87109 -32.21472 -30.21052 -30.00751 -29.52699 -27.72750 -25.52629 -23.34875 -22.69883 -21.64670 -21.17243 -21.03627 -18.66000 -18.34726 -17.68682 -16.82185 -16.23785 -16.06594 -15.96046 -15.62495 -15.37521 -15.01494 -14.39398 -14.09649 -14.02047 -13.97418 -13.27681 -13.23753 -13.11332 -12.74034 -12.58600 -12.14580 -12.02871 -11.89535 -11.64548 -11.51259 -11.28429 -11.24084 -11.12827 -11.07997 -10.98045 -10.91291 -10.66623 -10.50853 -10.43180 -9.89499 -9.43124 -9.38956 -8.96398 -8.76454 -8.62792 -8.01159 -7.57905 -7.00889 -4.74591 1.11707 1.19722 1.59870 2.36397 2.75683 2.96129 2.98866 3.13346 3.50875 3.77852 3.97666 4.12208 4.42803 4.72580 4.74015 4.78086 4.91301 5.13678 5.22469 5.31942 5.32630 5.46620 5.55979 5.69402 5.78602 5.91744 6.02054 6.08666 6.11364 6.21787 6.26723 6.34692 6.41311 6.47896 6.48893 6.70722 6.79336 6.97747 7.10926 7.32865 7.51139 7.56896 7.58647 7.70220 7.83121 7.91251 8.30506 8.51685 8.67050 9.91865 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.010769 B = 0.003776 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.464156 B = 7413.443010 C = 7828.248173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.080 3.920 3 Si 0.914 3.086 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.446 4.446 8 H 0.086 0.914 9 C 0.187 3.813 10 C -0.158 4.158 11 C -0.077 4.077 12 C -0.250 4.250 13 C -0.003 4.003 14 C -0.774 4.774 15 S 2.700 3.300 16 O -0.965 6.965 17 O -0.997 6.997 18 N -1.122 6.122 19 C 0.133 3.867 20 C -0.081 4.081 21 C -0.103 4.103 22 C -0.098 4.098 23 C -0.128 4.128 24 C -0.110 4.110 25 C -0.147 4.147 26 C 0.109 3.891 27 O -0.491 6.491 28 H 0.288 0.712 29 H 0.126 0.874 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.410 0.590 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.487 -4.239 8.651 16.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.141 4.141 3 Si 0.737 3.263 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.474 4.474 8 H 0.104 0.896 9 C 0.182 3.818 10 C -0.178 4.178 11 C -0.096 4.096 12 C -0.270 4.270 13 C -0.023 4.023 14 C -0.869 4.869 15 S 2.798 3.202 16 O -0.956 6.956 17 O -0.987 6.987 18 N -0.879 5.879 19 C 0.006 3.994 20 C -0.120 4.120 21 C -0.104 4.104 22 C -0.116 4.116 23 C -0.146 4.146 24 C -0.128 4.128 25 C -0.165 4.165 26 C 0.065 3.935 27 O -0.301 6.301 28 H 0.099 0.901 29 H 0.143 0.857 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.126 0.874 33 H 0.243 0.757 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 12.704 -4.687 7.783 15.618 hybrid contribution 0.363 1.278 0.601 1.458 sum 13.068 -3.409 8.384 15.896 Atomic orbital electron populations 1.69772 1.07755 1.30160 1.32450 1.25944 0.94888 1.01798 0.91430 0.86234 0.80307 0.79215 0.80495 1.18048 1.19927 1.18445 1.19804 0.96605 0.90758 1.40258 0.89568 1.17001 0.90278 0.89696 0.84843 1.21519 0.98191 0.96779 1.01337 1.20903 0.97515 0.93512 0.97642 1.20492 1.01053 0.96985 1.08488 1.20269 0.93580 0.95129 0.93323 1.29882 1.25606 1.00771 1.30683 1.01087 0.73252 0.72451 0.73445 1.93544 1.85957 1.56235 1.59819 1.93454 1.86015 1.37460 1.81764 1.55665 1.50792 1.35827 1.45629 1.21053 0.95154 0.94491 0.88674 1.20658 0.97329 0.98548 0.95436 1.20175 1.00481 0.94485 0.95284 1.21074 0.98791 1.00285 0.91423 1.21170 0.99568 0.94738 0.99142 1.21016 0.99102 0.96395 0.96327 1.21414 1.02199 1.00498 0.92401 1.18363 0.98966 0.91984 0.84217 1.84908 1.40010 1.78999 1.26145 0.90125 0.85674 0.88841 0.88757 0.87423 0.75740 0.90394 0.91706 0.90295 0.90168 0.85261 0.85817 0.85855 0.85565 0.75743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.16 10.84 55.55 0.60 -18.56 16 2 C 0.08 1.93 5.25 -17.34 -0.09 1.84 16 3 Si 0.91 17.83 29.57 -169.99 -5.03 12.80 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 6 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 7 C -0.45 -11.16 7.63 -37.74 -0.29 -11.45 16 8 H 0.09 2.00 5.83 -52.49 -0.31 1.69 16 9 C 0.19 4.78 5.55 -106.83 -0.59 4.19 16 10 C -0.16 -3.94 8.66 -38.88 -0.34 -4.28 16 11 C -0.08 -1.74 10.02 -39.67 -0.40 -2.14 16 12 C -0.25 -5.58 10.05 -39.29 -0.39 -5.97 16 13 C 0.00 -0.07 9.54 -39.66 -0.38 -0.45 16 14 C -0.77 -18.85 5.90 -38.87 -0.23 -19.08 16 15 S 2.70 60.42 4.96 -107.50 -0.53 59.89 16 16 O -0.97 -24.34 16.52 -57.17 -0.94 -25.28 16 17 O -1.00 -23.53 16.53 -57.17 -0.94 -24.47 16 18 N -1.12 -19.75 5.13 -10.61 -0.05 -19.81 16 19 C 0.13 2.11 6.17 -4.04 -0.02 2.08 16 20 C -0.08 -0.98 5.20 -27.88 -0.15 -1.13 16 21 C -0.10 -1.22 5.15 -104.47 -0.54 -1.76 16 22 C -0.10 -1.06 9.68 -39.61 -0.38 -1.45 16 23 C -0.13 -1.24 10.04 -39.56 -0.40 -1.64 16 24 C -0.11 -1.03 10.04 -39.61 -0.40 -1.43 16 25 C -0.15 -1.50 9.99 -39.43 -0.39 -1.90 16 26 C 0.11 1.27 6.68 -39.22 -0.26 1.01 16 27 O -0.49 -5.52 12.64 -19.41 -0.25 -5.77 16 28 H 0.29 6.39 8.30 -40.82 -0.34 6.05 16 29 H 0.13 3.13 6.21 -52.48 -0.33 2.80 16 30 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 31 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 32 H 0.11 2.35 7.32 -52.49 -0.38 1.96 16 33 H 0.41 6.24 8.48 -34.47 -0.29 5.94 16 34 H 0.08 1.33 7.82 -51.93 -0.41 0.92 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.08 0.86 7.70 -51.93 -0.40 0.46 16 37 H 0.08 0.88 8.05 -51.93 -0.42 0.46 16 38 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 40 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 42 H 0.39 2.44 9.06 45.56 0.41 2.85 16 LS Contribution 368.34 15.07 5.55 5.55 Total: -1.00 -32.92 368.34 -11.06 -43.98 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -4.21 Total: 15.22 kcal Atomic # 6 Polarization: -38.31 SS G_CDS: -5.25 Total: -43.56 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.55 Total: -38.37 kcal Atomic # 8 Polarization: -53.38 SS G_CDS: -2.14 Total: -55.52 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Atomic # 16 Polarization: 60.42 SS G_CDS: -0.53 Total: 59.89 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.92 -11.06 -43.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363779863.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.205 kcal (2) G-P(sol) polarization free energy of solvation -32.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds