Wall clock time and date at job start Wed Apr 1 2020 04:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86795 * 119.99626 * 2 1 4 4 H 1.48503 * 109.47107 * 240.00166 * 3 2 1 5 5 H 1.48501 * 109.47659 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47257 * 120.00261 * 3 2 1 7 7 C 1.39945 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99801 * 168.81662 * 7 2 1 9 9 C 1.41396 * 120.00096 * 348.81634 * 7 2 1 10 10 C 1.40730 * 120.24669 * 331.56335 * 9 7 2 11 11 C 1.37594 * 119.74453 * 180.31933 * 10 9 7 12 12 C 1.38648 * 120.24869 * 359.65943 * 11 10 9 13 13 C 1.38613 * 120.50424 * 0.02562 * 12 11 10 14 14 C 1.37644 * 120.24446 * 0.02562 * 13 12 11 15 15 S 1.76202 * 120.12542 * 179.97438 * 14 13 12 16 16 O 1.42097 * 106.40092 * 132.26529 * 15 14 13 17 17 O 1.42105 * 106.40327 * 359.34186 * 15 14 13 18 18 N 1.65607 * 107.21492 * 245.80265 * 15 14 13 19 19 C 1.46498 * 119.99781 * 62.82260 * 18 15 14 20 20 C 1.52998 * 109.47031 * 165.96726 * 19 18 15 21 21 C 1.50703 * 109.47571 * 180.02562 * 20 19 18 22 22 C 1.38165 * 120.02161 * 264.99970 * 21 20 19 23 23 C 1.38245 * 120.05021 * 179.97438 * 22 21 20 24 24 C 1.38287 * 120.11589 * 0.02562 * 23 22 21 25 25 C 1.38122 * 120.05021 * 0.02562 * 24 23 22 26 26 C 1.38708 * 120.02859 * 84.71713 * 21 20 19 27 27 O 1.35894 * 120.05651 * 0.02562 * 26 21 20 28 28 H 0.96999 * 120.00244 * 359.97438 * 1 2 3 29 29 H 1.08009 * 120.12716 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.87602 * 179.68569 * 11 10 9 31 31 H 1.08007 * 119.74997 * 180.02562 * 12 11 10 32 32 H 1.07999 * 119.87964 * 180.02562 * 13 12 11 33 33 H 0.96996 * 119.99880 * 242.81911 * 18 15 14 34 34 H 1.09004 * 109.47376 * 45.97214 * 19 18 15 35 35 H 1.08998 * 109.47552 * 285.96980 * 19 18 15 36 36 H 1.09005 * 109.47006 * 300.00110 * 20 19 18 37 37 H 1.09000 * 109.47325 * 59.99436 * 20 19 18 38 38 H 1.08000 * 119.97620 * 359.97438 * 22 21 20 39 39 H 1.08006 * 119.94575 * 180.02562 * 23 22 21 40 40 H 1.08000 * 119.97578 * 179.97438 * 24 23 22 41 41 H 1.08003 * 120.02178 * 179.97438 * 25 24 23 42 42 H 0.96701 * 114.00350 * 89.99728 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0726 -1.2207 -0.1819 9 6 1.3211 -2.4250 0.2364 10 6 0.1570 -2.4377 1.0271 11 6 -0.4995 -3.6250 1.2564 12 6 -0.0222 -4.8046 0.7061 13 6 1.1197 -4.8030 -0.0796 14 6 1.7932 -3.6272 -0.3215 15 16 3.2449 -3.6288 -1.3202 16 8 3.0909 -2.5687 -2.2537 17 8 3.4648 -4.9786 -1.7063 18 7 4.5135 -3.2097 -0.3416 19 6 4.8811 -4.0665 0.7883 20 6 6.2626 -3.6621 1.3068 21 6 6.6412 -4.5438 2.4688 22 6 6.3971 -4.1250 3.7626 23 6 6.7437 -4.9337 4.8290 24 6 7.3357 -6.1630 4.6039 25 6 7.5827 -6.5856 3.3123 26 6 7.2295 -5.7790 2.2401 27 8 7.4657 -6.1953 0.9682 28 1 -0.4850 0.8400 0.0004 29 1 -0.2170 -1.5197 1.4561 30 1 -1.3902 -3.6379 1.8671 31 1 -0.5441 -5.7320 0.8910 32 1 1.4824 -5.7277 -0.5036 33 1 5.0131 -2.3969 -0.5167 34 1 4.9054 -5.1066 0.4629 35 1 4.1462 -3.9523 1.5852 36 1 6.9975 -3.7764 0.5099 37 1 6.2384 -2.6220 1.6321 38 1 5.9353 -3.1652 3.9411 39 1 6.5518 -4.6048 5.8397 40 1 7.6059 -6.7927 5.4387 41 1 8.0454 -7.5456 3.1371 42 1 8.3331 -5.9399 0.6254 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363779863.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:22 Heat of formation + Delta-G solvation = -105.747529 kcal Electronic energy + Delta-G solvation = -28113.738546 eV Core-core repulsion = 24149.100140 eV Total energy + Delta-G solvation = -3964.638406 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.81540 -39.38630 -38.05715 -37.51125 -36.89502 -36.67334 -35.66535 -33.25545 -32.02318 -31.35825 -30.80092 -28.75655 -27.35358 -24.46003 -23.48181 -23.45452 -22.93803 -22.01767 -20.28388 -19.50902 -19.21109 -18.49192 -17.89670 -17.29065 -16.97116 -16.89642 -16.78125 -16.12264 -16.03363 -15.66309 -15.23373 -15.09460 -14.90181 -14.77121 -14.46152 -14.15014 -13.70817 -13.50751 -13.27659 -13.21340 -13.00068 -12.95502 -12.87024 -12.85699 -12.76670 -12.65084 -12.54581 -12.37888 -12.15642 -12.04000 -11.67177 -11.26521 -11.17894 -11.12897 -10.27517 -9.84742 -9.75316 -9.45656 -9.43612 -8.78082 -6.61394 -0.18279 0.35646 0.42774 0.52757 0.97557 1.37654 1.49662 1.53958 2.17092 2.33488 2.63869 2.76304 2.97716 3.38286 3.47536 3.81637 3.86571 3.94115 4.13991 4.20950 4.28876 4.32823 4.49451 4.53430 4.58665 4.62604 4.67314 4.72733 4.95999 4.97874 5.04232 5.14227 5.14833 5.22755 5.30810 5.48922 5.51589 5.59889 5.64522 5.70238 5.82241 5.99229 5.99732 6.07920 6.24405 6.47163 6.67851 6.83177 6.92354 8.17616 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.010769 B = 0.003776 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.464156 B = 7413.443010 C = 7828.248173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.038 3.962 3 Si 0.977 3.023 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.242 1.242 7 C -0.474 4.474 8 H 0.094 0.906 9 C 0.162 3.838 10 C -0.184 4.184 11 C -0.076 4.076 12 C -0.251 4.251 13 C -0.019 4.019 14 C -0.793 4.793 15 S 2.719 3.281 16 O -0.998 6.998 17 O -1.012 7.012 18 N -1.108 6.108 19 C 0.133 3.867 20 C -0.072 4.072 21 C -0.122 4.122 22 C -0.109 4.109 23 C -0.133 4.133 24 C -0.108 4.108 25 C -0.156 4.156 26 C 0.097 3.903 27 O -0.508 6.508 28 H 0.295 0.705 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.118 0.882 33 H 0.422 0.578 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.135 0.865 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.140 0.860 42 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.672 -4.188 10.163 18.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.180 4.180 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.166 1.166 7 C -0.502 4.502 8 H 0.112 0.888 9 C 0.157 3.843 10 C -0.204 4.204 11 C -0.095 4.095 12 C -0.271 4.271 13 C -0.039 4.039 14 C -0.887 4.887 15 S 2.815 3.185 16 O -0.988 6.988 17 O -1.002 7.002 18 N -0.869 5.869 19 C 0.006 3.994 20 C -0.111 4.111 21 C -0.124 4.124 22 C -0.127 4.127 23 C -0.151 4.151 24 C -0.126 4.126 25 C -0.175 4.175 26 C 0.052 3.948 27 O -0.321 6.321 28 H 0.106 0.894 29 H 0.135 0.865 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.136 0.864 33 H 0.258 0.742 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.153 0.847 39 H 0.163 0.837 40 H 0.168 0.832 41 H 0.158 0.842 42 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 13.884 -4.643 9.300 17.344 hybrid contribution -0.009 1.125 0.165 1.137 sum 13.875 -3.518 9.465 17.160 Atomic orbital electron populations 1.69816 1.09078 1.31463 1.32928 1.26848 0.95675 1.04897 0.90569 0.85307 0.79229 0.75048 0.80787 1.18562 1.18780 1.16562 1.20129 0.97253 0.91441 1.41341 0.88767 1.17324 0.91006 0.90488 0.85464 1.21597 0.99022 0.97411 1.02394 1.21251 0.98048 0.92891 0.97282 1.20882 1.00589 0.98173 1.07437 1.20570 0.94149 0.95328 0.93809 1.30154 1.26888 1.00923 1.30721 1.00367 0.73340 0.71621 0.73172 1.93490 1.86643 1.57145 1.61510 1.93427 1.86264 1.38233 1.82275 1.55235 1.49300 1.36674 1.45656 1.21151 0.97321 0.93416 0.87470 1.20580 0.95032 0.99391 0.96111 1.20197 1.01835 0.94912 0.95435 1.21280 0.98937 1.00919 0.91528 1.21481 0.99050 0.94716 0.99879 1.21376 0.97943 0.96479 0.96791 1.21657 1.02313 1.00963 0.92523 1.18572 0.99355 0.92214 0.84649 1.84850 1.41702 1.79233 1.26321 0.89360 0.86525 0.85879 0.85597 0.86380 0.74200 0.91831 0.92662 0.89118 0.88858 0.84667 0.83662 0.83232 0.84208 0.73607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.35 10.84 21.83 0.24 -40.11 16 2 C 0.04 1.83 5.25 85.26 0.45 2.28 16 3 Si 0.98 35.98 29.57 68.60 2.03 38.01 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 5 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 6 H -0.24 -8.16 7.11 99.48 0.71 -7.45 16 7 C -0.47 -24.02 7.63 23.46 0.18 -23.84 16 8 H 0.09 4.41 5.83 -2.91 -0.02 4.40 16 9 C 0.16 8.44 5.55 -21.29 -0.12 8.32 16 10 C -0.18 -9.30 8.66 22.73 0.20 -9.10 16 11 C -0.08 -3.40 10.02 22.22 0.22 -3.18 16 12 C -0.25 -10.91 10.05 22.46 0.23 -10.68 16 13 C -0.02 -0.88 9.54 22.22 0.21 -0.67 16 14 C -0.79 -39.16 5.90 22.73 0.13 -39.03 16 15 S 2.72 123.23 4.96 -56.49 -0.28 122.95 16 16 O -1.00 -51.17 16.52 -128.00 -2.12 -53.28 16 17 O -1.01 -48.19 16.53 -128.00 -2.12 -50.31 16 18 N -1.11 -38.94 5.13 -187.49 -0.96 -39.90 16 19 C 0.13 4.19 6.17 86.38 0.53 4.72 16 20 C -0.07 -1.69 5.20 29.85 0.16 -1.54 16 21 C -0.12 -2.79 5.15 -19.77 -0.10 -2.89 16 22 C -0.11 -2.23 9.68 22.25 0.22 -2.01 16 23 C -0.13 -2.31 10.04 22.28 0.22 -2.08 16 24 C -0.11 -1.76 10.04 22.25 0.22 -1.54 16 25 C -0.16 -2.95 9.99 22.37 0.22 -2.72 16 26 C 0.10 2.15 6.68 22.51 0.15 2.31 16 27 O -0.51 -11.06 12.64 -92.36 -1.17 -12.22 16 28 H 0.30 13.21 8.30 -92.71 -0.77 12.44 16 29 H 0.12 5.97 6.21 -2.91 -0.02 5.96 16 30 H 0.12 4.65 8.06 -2.91 -0.02 4.62 16 31 H 0.13 4.60 8.06 -2.91 -0.02 4.57 16 32 H 0.12 5.13 7.32 -2.91 -0.02 5.11 16 33 H 0.42 12.64 8.48 -96.75 -0.82 11.82 16 34 H 0.06 2.19 7.82 -2.39 -0.02 2.18 16 35 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.09 1.87 7.70 -2.38 -0.02 1.85 16 37 H 0.09 1.91 8.05 -2.39 -0.02 1.89 16 38 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 39 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 42 H 0.41 4.75 9.06 -74.06 -0.67 4.08 16 Total: -1.00 -71.11 368.34 -1.67 -72.78 By element: Atomic # 1 Polarization: 44.18 SS G_CDS: -0.41 Total: 43.76 kcal Atomic # 6 Polarization: -84.79 SS G_CDS: 3.12 Total: -81.67 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -0.73 Total: -80.01 kcal Atomic # 8 Polarization: -110.42 SS G_CDS: -5.40 Total: -115.82 kcal Atomic # 14 Polarization: 35.98 SS G_CDS: 2.03 Total: 38.01 kcal Atomic # 16 Polarization: 123.23 SS G_CDS: -0.28 Total: 122.95 kcal Total: -71.11 -1.67 -72.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363779863.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.966 kcal (2) G-P(sol) polarization free energy of solvation -71.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds