Wall clock time and date at job start Wed Apr 1 2020 03:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42890 * 113.99622 * 2 1 4 4 C 1.53005 * 109.46963 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46655 * 65.00222 * 4 3 2 6 6 C 1.46500 * 119.99765 * 274.99790 * 5 4 3 7 7 C 1.50705 * 109.47354 * 275.00268 * 6 5 4 8 8 H 1.08003 * 119.99755 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00134 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99680 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00129 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47225 * 89.99845 * 11 9 7 13 13 H 1.48493 * 109.47120 * 209.99972 * 11 9 7 14 14 H 1.48504 * 109.47113 * 330.00122 * 11 9 7 15 15 S 1.65597 * 120.00287 * 95.00194 * 5 4 3 16 16 O 1.42100 * 106.40286 * 156.45773 * 15 5 4 17 17 O 1.42105 * 106.40343 * 23.53517 * 15 5 4 18 18 C 1.76197 * 107.21863 * 269.99748 * 15 5 4 19 19 C 1.35542 * 120.50520 * 109.99847 * 18 15 5 20 20 N 1.36158 * 119.26422 * 180.02562 * 19 18 15 21 21 C 1.46499 * 119.85554 * 179.97438 * 20 19 18 22 22 C 1.34582 * 120.29020 * 0.25044 * 20 19 18 23 23 O 1.21975 * 119.47331 * 179.72297 * 22 20 19 24 24 N 1.33272 * 121.04906 * 359.48498 * 22 20 19 25 25 C 1.32427 * 120.73013 * 0.51954 * 24 22 20 26 26 O 1.35162 * 120.16648 * 179.76542 * 25 24 22 27 27 H 1.09003 * 109.46969 * 179.97438 * 1 2 3 28 28 H 1.08987 * 109.47201 * 300.00042 * 1 2 3 29 29 H 1.08996 * 109.46988 * 60.00716 * 1 2 3 30 30 H 1.08997 * 109.47525 * 59.99682 * 3 2 1 31 31 H 1.09007 * 109.47358 * 299.99640 * 3 2 1 32 32 H 1.08999 * 109.47253 * 305.00034 * 4 3 2 33 33 H 1.09004 * 109.47158 * 184.99708 * 4 3 2 34 34 H 1.08994 * 109.47582 * 35.00286 * 6 5 4 35 35 H 1.09001 * 109.47409 * 155.00371 * 6 5 4 36 36 H 0.96997 * 119.99350 * 180.02562 * 10 9 7 37 37 H 1.08008 * 120.36290 * 0.04472 * 19 18 15 38 38 H 1.09002 * 109.47391 * 89.99589 * 21 20 19 39 39 H 1.09001 * 109.46813 * 329.99646 * 21 20 19 40 40 H 1.09004 * 109.47041 * 209.99773 * 21 20 19 41 41 H 0.96694 * 113.99617 * 359.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0014 -0.8954 -1.3758 7 6 5.3000 -1.4249 -0.8240 8 1 6.0337 -0.7424 -0.4210 9 6 5.5515 -2.7805 -0.8336 10 7 6.6850 -3.2424 -0.3525 11 14 4.2830 -3.9608 -1.5313 12 1 4.5333 -4.1558 -2.9820 13 1 4.3843 -5.2667 -0.8316 14 1 2.9227 -3.3983 -1.3350 15 16 4.4473 1.5121 -2.5245 16 8 5.3032 0.7103 -3.3269 17 8 4.8441 2.7594 -1.9711 18 6 3.0118 1.8325 -3.4947 19 6 2.4694 3.0741 -3.5317 20 7 1.3597 3.2934 -4.2894 21 6 0.7624 4.6302 -4.3384 22 6 0.8057 2.2861 -4.9893 23 8 -0.1913 2.4980 -5.6592 24 7 1.3320 1.0619 -4.9657 25 6 2.4107 0.8029 -4.2426 26 8 2.9322 -0.4440 -4.2232 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.6885 1.8464 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 3.8508 0.5685 0.8427 33 1 3.9785 2.1766 0.0902 34 1 3.1685 -1.3222 -0.8172 35 1 3.9137 -1.1718 -2.4266 36 1 6.8621 -4.1960 -0.3596 37 1 2.9129 3.8807 -2.9665 38 1 1.2097 5.1984 -5.1540 39 1 0.9447 5.1443 -3.3947 40 1 -0.3116 4.5425 -4.5029 41 1 2.4494 -1.0806 -4.7679 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365035801.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:22 Heat of formation + Delta-G solvation = -163.332857 kcal Electronic energy + Delta-G solvation = -30873.249626 eV Core-core repulsion = 26495.264869 eV Total energy + Delta-G solvation = -4377.984756 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.108 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.05434 -40.08309 -39.07860 -38.42746 -37.99272 -36.98873 -36.80471 -35.86803 -34.47587 -32.86290 -31.30432 -28.83350 -28.62710 -27.00208 -26.21021 -24.80922 -24.20091 -23.15399 -21.13072 -20.32840 -19.63102 -19.18678 -18.77320 -18.37608 -17.85893 -17.50245 -17.30085 -17.02525 -16.61098 -16.40205 -16.17088 -15.73593 -15.67415 -15.63539 -15.23816 -15.05764 -14.57058 -14.41594 -13.94571 -13.68833 -13.59196 -13.43342 -13.26254 -13.19128 -12.99855 -12.91354 -12.89304 -12.69017 -12.42840 -12.11069 -12.07335 -11.90903 -11.83847 -11.58342 -11.40232 -11.18197 -10.66573 -10.54247 -10.30362 -9.68279 -8.18529 -6.20023 -0.72050 -0.59138 -0.05196 1.12600 1.43141 1.44558 1.54810 1.93667 2.01952 2.33189 2.44165 2.77631 2.94411 2.98934 3.10339 3.18515 3.50218 3.79028 3.90898 3.99217 4.09385 4.20040 4.35681 4.41540 4.48846 4.51997 4.61965 4.69949 4.75562 4.84756 4.90758 4.95952 5.11465 5.26315 5.50734 5.63845 5.83988 5.96352 6.35747 6.39663 6.41455 6.72556 6.82392 7.41630 8.98714 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012639 B = 0.004859 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.912184 B = 5760.587921 C = 5827.554148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.042 3.958 4 C 0.109 3.891 5 N -0.973 5.973 6 C 0.237 3.763 7 C -0.528 4.528 8 H 0.036 0.964 9 C 0.010 3.990 10 N -0.951 5.951 11 Si 0.931 3.069 12 H -0.266 1.266 13 H -0.287 1.287 14 H -0.235 1.235 15 S 2.717 3.283 16 O -0.970 6.970 17 O -0.967 6.967 18 C -0.849 4.849 19 C 0.339 3.661 20 N -0.516 5.516 21 C 0.044 3.956 22 C 0.653 3.347 23 O -0.562 6.562 24 N -0.640 5.640 25 C 0.522 3.478 26 O -0.437 6.437 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.036 0.964 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.125 0.875 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.264 0.736 37 H 0.254 0.746 38 H 0.102 0.898 39 H 0.142 0.858 40 H 0.091 0.909 41 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.032 17.782 -1.983 23.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.325 6.325 3 C -0.036 4.036 4 C -0.016 4.016 5 N -0.811 5.811 6 C 0.112 3.888 7 C -0.567 4.567 8 H 0.054 0.946 9 C -0.187 4.187 10 N -0.592 5.592 11 Si 0.754 3.246 12 H -0.191 1.191 13 H -0.213 1.213 14 H -0.157 1.157 15 S 2.803 3.197 16 O -0.960 6.960 17 O -0.957 6.957 18 C -0.943 4.943 19 C 0.196 3.804 20 N -0.226 5.226 21 C -0.096 4.096 22 C 0.356 3.644 23 O -0.439 6.439 24 N -0.400 5.400 25 C 0.321 3.679 26 O -0.233 6.233 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.143 0.857 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.270 0.730 38 H 0.120 0.880 39 H 0.160 0.840 40 H 0.110 0.890 41 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges -14.836 17.610 -2.777 23.194 hybrid contribution -0.785 -1.003 -0.476 1.360 sum -15.621 16.607 -3.253 23.030 Atomic orbital electron populations 1.22819 0.80632 1.03028 1.00343 1.88042 1.20344 1.28657 1.95453 1.23235 0.93570 0.84988 1.01783 1.21685 0.92847 1.00228 0.86858 1.57023 1.82166 1.16679 1.25232 1.19304 0.95793 0.75995 0.97677 1.21749 1.02915 0.92629 1.39445 0.94595 1.25745 0.97334 1.00216 0.95436 1.70064 1.26122 1.14321 1.48699 0.85955 0.81293 0.78214 0.79127 1.19110 1.21255 1.15744 1.01247 0.73230 0.72541 0.72639 1.93589 1.62759 1.69683 1.69967 1.93485 1.80718 1.43214 1.78329 1.30788 1.32945 1.00182 1.30367 1.23058 0.79932 0.96021 0.81405 1.46756 1.23513 1.15025 1.37321 1.22831 1.01213 0.77658 1.07854 1.17585 0.84699 0.81477 0.80682 1.90975 1.26279 1.82412 1.44244 1.69590 1.17302 1.21156 1.31983 1.19446 0.83047 0.84835 0.80583 1.85219 1.53881 1.17052 1.67143 0.89954 0.92215 0.94565 0.89183 0.92881 0.89916 0.85702 0.92829 0.93673 0.92730 0.72987 0.87950 0.83968 0.89036 0.70203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.83 16 2 O -0.41 -11.39 9.02 -148.98 -1.34 -12.74 16 3 C 0.04 0.91 6.28 71.98 0.45 1.37 16 4 C 0.11 3.06 6.13 86.38 0.53 3.59 16 5 N -0.97 -35.11 2.75 -519.83 -1.43 -36.55 16 6 C 0.24 10.62 4.01 85.63 0.34 10.96 16 7 C -0.53 -29.87 9.94 25.60 0.25 -29.61 16 8 H 0.04 2.25 8.06 -2.91 -0.02 2.23 16 9 C 0.01 0.57 5.47 84.65 0.46 1.03 16 10 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 11 Si 0.93 43.43 27.47 68.60 1.88 45.31 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 13 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 14 H -0.23 -9.85 6.54 99.48 0.65 -9.20 16 15 S 2.72 90.50 5.37 -56.49 -0.30 90.19 16 16 O -0.97 -42.61 16.09 -122.14 -1.96 -44.58 16 17 O -0.97 -28.94 15.56 -128.00 -1.99 -30.93 16 18 C -0.85 -21.52 5.92 22.26 0.13 -21.39 16 19 C 0.34 5.36 9.91 83.40 0.83 6.18 16 20 N -0.52 -9.04 2.99 -681.23 -2.04 -11.08 16 21 C 0.04 0.33 10.38 127.77 1.33 1.65 16 22 C 0.65 18.67 8.34 179.58 1.50 20.17 16 23 O -0.56 -19.28 16.72 -5.23 -0.09 -19.36 16 24 N -0.64 -19.59 10.40 -438.80 -4.56 -24.15 16 25 C 0.52 15.09 7.86 85.22 0.67 15.76 16 26 O -0.44 -13.00 10.05 -72.33 -0.73 -13.73 16 27 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.08 2.65 8.11 -2.39 -0.02 2.63 16 33 H 0.13 2.76 6.91 -2.38 -0.02 2.75 16 34 H 0.05 2.38 5.66 -2.39 -0.01 2.36 16 35 H 0.05 2.02 4.67 -2.39 -0.01 2.01 16 36 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 37 H 0.25 1.29 7.36 -2.91 -0.02 1.27 16 38 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.14 -0.27 8.03 -2.39 -0.02 -0.29 16 40 H 0.09 0.97 7.37 -2.38 -0.02 0.96 16 41 H 0.44 9.02 8.98 -74.06 -0.66 8.36 16 Total: -1.00 -91.49 358.68 -4.16 -95.65 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.37 Total: 10.02 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 7.74 Total: 11.53 kcal Atomic # 7 Polarization: -123.64 SS G_CDS: -7.74 Total: -131.37 kcal Atomic # 8 Polarization: -115.22 SS G_CDS: -6.11 Total: -121.33 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.88 Total: 45.31 kcal Atomic # 16 Polarization: 90.50 SS G_CDS: -0.30 Total: 90.19 kcal Total: -91.49 -4.16 -95.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365035801.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.685 kcal (2) G-P(sol) polarization free energy of solvation -91.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds