Wall clock time and date at job start Wed Apr 1 2020 04:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86798 * 120.00148 * 2 1 4 4 H 1.48501 * 109.47356 * 269.99752 * 3 2 1 5 5 H 1.48504 * 109.47061 * 29.99958 * 3 2 1 6 6 H 1.48501 * 109.47045 * 149.99750 * 3 2 1 7 7 C 1.39951 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99846 * 168.77636 * 7 2 1 9 9 C 1.41392 * 119.99857 * 348.78012 * 7 2 1 10 10 C 1.40742 * 120.24543 * 331.57151 * 9 7 2 11 11 C 1.37591 * 119.74373 * 180.32123 * 10 9 7 12 12 C 1.38656 * 120.25069 * 359.66707 * 11 10 9 13 13 C 1.38609 * 120.50183 * 0.02562 * 12 11 10 14 14 C 1.37641 * 120.24970 * 0.02562 * 13 12 11 15 15 S 1.76196 * 120.12924 * 179.97438 * 14 13 12 16 16 O 1.42106 * 106.40359 * 132.26130 * 15 14 13 17 17 O 1.42092 * 106.40463 * 359.33531 * 15 14 13 18 18 N 1.65609 * 107.21651 * 245.79773 * 15 14 13 19 19 C 1.46502 * 119.99515 * 62.81986 * 18 15 14 20 20 C 1.53010 * 109.46415 * 165.96899 * 19 18 15 21 21 H 1.08996 * 109.46952 * 304.99697 * 20 19 18 22 22 O 1.42899 * 109.46809 * 65.00342 * 20 19 18 23 23 C 1.50702 * 109.46737 * 184.99806 * 20 19 18 24 24 C 1.38236 * 120.00194 * 279.73192 * 23 20 19 25 25 C 1.38233 * 119.99828 * 179.78876 * 24 23 20 26 26 C 1.38234 * 119.99924 * 0.43809 * 25 24 23 27 27 C 1.38235 * 120.00109 * 359.81224 * 26 25 24 28 28 C 1.38228 * 119.99834 * 359.97438 * 27 26 25 29 29 H 0.96993 * 119.99906 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.12707 * 0.02562 * 10 9 7 31 31 H 1.08009 * 119.87745 * 179.68571 * 11 10 9 32 32 H 1.08001 * 119.74862 * 180.02562 * 12 11 10 33 33 H 1.07997 * 119.87868 * 179.97438 * 13 12 11 34 34 H 0.96998 * 119.99839 * 242.82443 * 18 15 14 35 35 H 1.08995 * 109.47237 * 45.97587 * 19 18 15 36 36 H 1.08995 * 109.47356 * 285.97093 * 19 18 15 37 37 H 0.96706 * 114.00165 * 59.99792 * 22 20 19 38 38 H 1.08005 * 119.99885 * 359.97438 * 24 23 20 39 39 H 1.08002 * 120.00028 * 180.27353 * 25 24 23 40 40 H 1.08010 * 119.99901 * 179.83579 * 26 25 24 41 41 H 1.08005 * 119.99669 * 180.02562 * 27 26 25 42 42 H 1.08008 * 119.99743 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4401 0.7001 7 6 2.0080 -1.2120 0.0005 8 1 3.0725 -1.2210 -0.1815 9 6 1.3213 -2.4247 0.2393 10 6 0.1574 -2.4363 1.0306 11 6 -0.4990 -3.6233 1.2618 12 6 -0.0219 -4.8038 0.7129 13 6 1.1198 -4.8032 -0.0731 14 6 1.7932 -3.6278 -0.3169 15 16 3.2445 -3.6308 -1.3160 16 8 3.0902 -2.5720 -2.2511 17 8 3.4644 -4.9811 -1.7001 18 7 4.5134 -3.2102 -0.3385 19 6 4.8814 -4.0654 0.7927 20 6 6.2631 -3.6600 1.3100 21 1 6.9812 -3.6903 0.4906 22 8 6.2027 -2.3350 1.8418 23 6 6.6948 -4.6162 2.3919 24 6 6.2129 -4.4670 3.6789 25 6 6.6055 -5.3467 4.6702 26 6 7.4870 -6.3703 4.3766 27 6 7.9729 -6.5164 3.0907 28 6 7.5769 -5.6393 2.0984 29 1 -0.4849 0.8400 -0.0004 30 1 -0.2164 -1.5179 1.4586 31 1 -1.3896 -3.6355 1.8728 32 1 -0.5437 -5.7308 0.8993 33 1 1.4828 -5.7286 -0.4952 34 1 5.0129 -2.3976 -0.5149 35 1 4.9057 -5.1058 0.4688 36 1 4.1468 -3.9500 1.5895 37 1 5.5819 -2.2339 2.5764 38 1 5.5274 -3.6648 3.9092 39 1 6.2256 -5.2328 5.6748 40 1 7.7959 -7.0561 5.1517 41 1 8.6613 -7.3163 2.8612 42 1 7.9569 -5.7532 1.0938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365129852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:43 Heat of formation + Delta-G solvation = -86.330152 kcal Electronic energy + Delta-G solvation = -28348.044772 eV Core-core repulsion = 24384.248366 eV Total energy + Delta-G solvation = -3963.796405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.77965 -37.61247 -37.25966 -36.21670 -34.83709 -34.13433 -33.84078 -31.67369 -30.99742 -30.23699 -29.56762 -27.46973 -25.54829 -23.48905 -22.69085 -21.68437 -21.19535 -21.08741 -18.66960 -17.76498 -17.69193 -16.91613 -16.48594 -16.01980 -15.88268 -15.40996 -15.18574 -14.83046 -14.40846 -14.23539 -14.10151 -13.75460 -13.50873 -13.27875 -13.17851 -12.87705 -12.75996 -12.60905 -11.91530 -11.88354 -11.53846 -11.31592 -11.31343 -11.25483 -11.17351 -11.09323 -11.06736 -11.00791 -10.71384 -10.52210 -10.06640 -9.91873 -9.49055 -9.43264 -9.06724 -8.93268 -8.76523 -8.05281 -7.61549 -7.03188 -4.77020 1.14805 1.25780 1.53886 2.32496 2.72920 2.97962 3.02764 3.12609 3.59533 3.78554 3.89575 4.39744 4.44222 4.56277 4.69978 4.71635 4.82764 4.96083 4.97966 5.16324 5.28351 5.35380 5.43523 5.62196 5.71549 5.78682 5.84572 5.98201 6.02868 6.21652 6.23285 6.31950 6.35831 6.40413 6.45204 6.77077 6.83065 6.94456 7.07443 7.29644 7.47512 7.52061 7.61340 7.67753 7.79606 7.88502 8.28257 8.49713 8.63744 9.89275 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.010779 B = 0.004005 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.094061 B = 6989.701458 C = 7554.287316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.080 3.920 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.443 4.443 8 H 0.089 0.911 9 C 0.186 3.814 10 C -0.158 4.158 11 C -0.077 4.077 12 C -0.251 4.251 13 C -0.003 4.003 14 C -0.776 4.776 15 S 2.700 3.300 16 O -0.963 6.963 17 O -0.999 6.999 18 N -1.118 6.118 19 C 0.099 3.901 20 C 0.143 3.857 21 H 0.114 0.886 22 O -0.549 6.549 23 C -0.112 4.112 24 C -0.108 4.108 25 C -0.117 4.117 26 C -0.122 4.122 27 C -0.120 4.120 28 C -0.108 4.108 29 H 0.287 0.713 30 H 0.126 0.874 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.415 0.585 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.378 0.622 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.149 -5.710 8.613 15.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.141 4.141 3 Si 0.738 3.262 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.177 1.177 7 C -0.471 4.471 8 H 0.107 0.893 9 C 0.181 3.819 10 C -0.178 4.178 11 C -0.096 4.096 12 C -0.271 4.271 13 C -0.023 4.023 14 C -0.872 4.872 15 S 2.797 3.203 16 O -0.953 6.953 17 O -0.990 6.990 18 N -0.875 5.875 19 C -0.028 4.028 20 C 0.082 3.918 21 H 0.132 0.868 22 O -0.355 6.355 23 C -0.114 4.114 24 C -0.126 4.126 25 C -0.135 4.135 26 C -0.140 4.140 27 C -0.138 4.138 28 C -0.126 4.126 29 H 0.099 0.901 30 H 0.143 0.857 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.125 0.875 34 H 0.249 0.751 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.226 0.774 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.382 -5.799 7.250 14.688 hybrid contribution -0.563 0.900 1.058 1.499 sum 10.818 -4.898 8.308 14.493 Atomic orbital electron populations 1.69778 1.07802 1.30136 1.32304 1.25960 0.94873 1.01900 0.91342 0.86174 0.80602 0.79444 0.80015 1.18685 1.19881 1.17727 1.19874 0.96746 0.90717 1.39802 0.89333 1.17006 0.90262 0.89704 0.84924 1.21528 0.98172 0.96774 1.01297 1.20904 0.97512 0.93510 0.97684 1.20484 1.01078 0.96970 1.08570 1.20252 0.93645 0.95090 0.93349 1.29848 1.25647 1.00776 1.30896 1.01102 0.73255 0.72416 0.73492 1.93551 1.85866 1.56231 1.59689 1.93442 1.86093 1.37537 1.81881 1.55609 1.50906 1.36139 1.44870 1.21786 0.96145 0.94997 0.89917 1.21026 0.96335 0.81146 0.93279 0.86838 1.86614 1.66724 1.27847 1.54311 1.20517 0.97980 0.97408 0.95447 1.20958 0.99637 0.99404 0.92619 1.21128 0.97887 0.95244 0.99287 1.21176 0.97768 0.98270 0.96775 1.21139 1.00193 0.99225 0.93246 1.21042 0.97214 0.94722 0.99610 0.90145 0.85677 0.88859 0.88792 0.87495 0.75057 0.89894 0.91132 0.77363 0.85843 0.85944 0.86174 0.85997 0.85710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.95 10.84 55.55 0.60 -18.35 16 2 C 0.08 1.91 5.25 -17.34 -0.09 1.82 16 3 Si 0.91 17.94 29.57 -169.99 -5.03 12.91 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 6 H -0.25 -4.81 7.11 56.52 0.40 -4.41 16 7 C -0.44 -10.94 7.63 -37.74 -0.29 -11.23 16 8 H 0.09 2.05 5.83 -52.49 -0.31 1.74 16 9 C 0.19 4.65 5.55 -106.82 -0.59 4.05 16 10 C -0.16 -3.84 8.66 -38.87 -0.34 -4.18 16 11 C -0.08 -1.71 10.02 -39.66 -0.40 -2.11 16 12 C -0.25 -5.42 10.05 -39.29 -0.39 -5.82 16 13 C 0.00 -0.08 9.54 -39.66 -0.38 -0.46 16 14 C -0.78 -18.31 5.90 -38.87 -0.23 -18.54 16 15 S 2.70 58.59 4.96 -107.50 -0.53 58.06 16 16 O -0.96 -23.97 16.53 -57.17 -0.94 -24.91 16 17 O -1.00 -22.57 16.53 -57.17 -0.94 -23.51 16 18 N -1.12 -19.16 5.10 -10.61 -0.05 -19.22 16 19 C 0.10 1.44 5.81 -4.04 -0.02 1.41 16 20 C 0.14 1.73 3.30 -27.88 -0.09 1.64 16 21 H 0.11 1.30 8.00 -51.93 -0.42 0.88 16 22 O -0.55 -7.01 13.00 -35.23 -0.46 -7.46 16 23 C -0.11 -1.27 4.97 -104.62 -0.52 -1.79 16 24 C -0.11 -1.14 9.32 -39.58 -0.37 -1.51 16 25 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 26 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 27 C -0.12 -1.13 10.05 -39.59 -0.40 -1.53 16 28 C -0.11 -1.12 9.67 -39.59 -0.38 -1.51 16 29 H 0.29 6.31 8.30 -40.82 -0.34 5.97 16 30 H 0.13 3.07 6.21 -52.49 -0.33 2.74 16 31 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 32 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.11 2.23 7.32 -52.49 -0.38 1.85 16 34 H 0.42 6.61 8.35 -34.48 -0.29 6.32 16 35 H 0.08 1.20 7.82 -51.93 -0.41 0.79 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.38 3.93 7.50 45.56 0.34 4.27 16 38 H 0.12 1.13 6.78 -52.48 -0.36 0.77 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 41 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 42 H 0.12 1.11 8.04 -52.48 -0.42 0.69 16 LS Contribution 366.23 15.07 5.52 5.52 Total: -1.00 -31.63 366.23 -11.36 -42.99 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -4.23 Total: 16.75 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: -5.29 Total: -42.77 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.55 Total: -37.57 kcal Atomic # 8 Polarization: -53.54 SS G_CDS: -2.35 Total: -55.89 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Atomic # 16 Polarization: 58.59 SS G_CDS: -0.53 Total: 58.06 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.63 -11.36 -42.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365129852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.341 kcal (2) G-P(sol) polarization free energy of solvation -31.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds