Wall clock time and date at job start Wed Apr 1 2020 04:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86798 * 120.00148 * 2 1 4 4 H 1.48501 * 109.47356 * 269.99752 * 3 2 1 5 5 H 1.48504 * 109.47061 * 29.99958 * 3 2 1 6 6 H 1.48501 * 109.47045 * 149.99750 * 3 2 1 7 7 C 1.39951 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99846 * 168.77636 * 7 2 1 9 9 C 1.41392 * 119.99857 * 348.78012 * 7 2 1 10 10 C 1.40742 * 120.24543 * 331.57151 * 9 7 2 11 11 C 1.37591 * 119.74373 * 180.32123 * 10 9 7 12 12 C 1.38656 * 120.25069 * 359.66707 * 11 10 9 13 13 C 1.38609 * 120.50183 * 0.02562 * 12 11 10 14 14 C 1.37641 * 120.24970 * 0.02562 * 13 12 11 15 15 S 1.76196 * 120.12924 * 179.97438 * 14 13 12 16 16 O 1.42106 * 106.40359 * 132.26130 * 15 14 13 17 17 O 1.42092 * 106.40463 * 359.33531 * 15 14 13 18 18 N 1.65609 * 107.21651 * 245.79773 * 15 14 13 19 19 C 1.46502 * 119.99515 * 62.81986 * 18 15 14 20 20 C 1.53010 * 109.46415 * 165.96899 * 19 18 15 21 21 H 1.08996 * 109.46952 * 304.99697 * 20 19 18 22 22 O 1.42899 * 109.46809 * 65.00342 * 20 19 18 23 23 C 1.50702 * 109.46737 * 184.99806 * 20 19 18 24 24 C 1.38236 * 120.00194 * 279.73192 * 23 20 19 25 25 C 1.38233 * 119.99828 * 179.78876 * 24 23 20 26 26 C 1.38234 * 119.99924 * 0.43809 * 25 24 23 27 27 C 1.38235 * 120.00109 * 359.81224 * 26 25 24 28 28 C 1.38228 * 119.99834 * 359.97438 * 27 26 25 29 29 H 0.96993 * 119.99906 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.12707 * 0.02562 * 10 9 7 31 31 H 1.08009 * 119.87745 * 179.68571 * 11 10 9 32 32 H 1.08001 * 119.74862 * 180.02562 * 12 11 10 33 33 H 1.07997 * 119.87868 * 179.97438 * 13 12 11 34 34 H 0.96998 * 119.99839 * 242.82443 * 18 15 14 35 35 H 1.08995 * 109.47237 * 45.97587 * 19 18 15 36 36 H 1.08995 * 109.47356 * 285.97093 * 19 18 15 37 37 H 0.96706 * 114.00165 * 59.99792 * 22 20 19 38 38 H 1.08005 * 119.99885 * 359.97438 * 24 23 20 39 39 H 1.08002 * 120.00028 * 180.27353 * 25 24 23 40 40 H 1.08010 * 119.99901 * 179.83579 * 26 25 24 41 41 H 1.08005 * 119.99669 * 180.02562 * 27 26 25 42 42 H 1.08008 * 119.99743 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4401 0.7001 7 6 2.0080 -1.2120 0.0005 8 1 3.0725 -1.2210 -0.1815 9 6 1.3213 -2.4247 0.2393 10 6 0.1574 -2.4363 1.0306 11 6 -0.4990 -3.6233 1.2618 12 6 -0.0219 -4.8038 0.7129 13 6 1.1198 -4.8032 -0.0731 14 6 1.7932 -3.6278 -0.3169 15 16 3.2445 -3.6308 -1.3160 16 8 3.0902 -2.5720 -2.2511 17 8 3.4644 -4.9811 -1.7001 18 7 4.5134 -3.2102 -0.3385 19 6 4.8814 -4.0654 0.7927 20 6 6.2631 -3.6600 1.3100 21 1 6.9812 -3.6903 0.4906 22 8 6.2027 -2.3350 1.8418 23 6 6.6948 -4.6162 2.3919 24 6 6.2129 -4.4670 3.6789 25 6 6.6055 -5.3467 4.6702 26 6 7.4870 -6.3703 4.3766 27 6 7.9729 -6.5164 3.0907 28 6 7.5769 -5.6393 2.0984 29 1 -0.4849 0.8400 -0.0004 30 1 -0.2164 -1.5179 1.4586 31 1 -1.3896 -3.6355 1.8728 32 1 -0.5437 -5.7308 0.8993 33 1 1.4828 -5.7286 -0.4952 34 1 5.0129 -2.3976 -0.5149 35 1 4.9057 -5.1058 0.4688 36 1 4.1468 -3.9500 1.5895 37 1 5.5819 -2.2339 2.5764 38 1 5.5274 -3.6648 3.9092 39 1 6.2256 -5.2328 5.6748 40 1 7.7959 -7.0561 5.1517 41 1 8.6613 -7.3163 2.8612 42 1 7.9569 -5.7532 1.0938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365129852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:42 Heat of formation + Delta-G solvation = -107.815895 kcal Electronic energy + Delta-G solvation = -28348.976464 eV Core-core repulsion = 24384.248366 eV Total energy + Delta-G solvation = -3964.728097 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.59771 -39.37828 -38.24720 -37.99761 -36.67552 -35.70775 -35.32283 -32.53261 -32.01314 -31.72220 -31.35035 -28.53589 -27.33979 -24.50392 -23.46353 -23.41070 -22.93074 -22.01679 -20.27109 -19.50392 -18.71420 -18.50319 -17.93243 -17.33145 -17.06705 -16.84334 -16.42327 -16.03283 -15.89756 -15.52412 -15.21895 -15.08053 -14.90997 -14.68904 -14.46127 -14.21552 -13.86431 -13.68067 -13.57018 -13.25977 -13.01406 -12.96116 -12.91776 -12.84555 -12.78165 -12.66720 -12.47455 -12.13203 -12.12447 -11.84580 -11.65191 -11.19418 -11.15824 -11.07235 -10.31998 -9.83920 -9.79727 -9.65895 -9.42530 -8.78617 -6.60638 -0.18972 0.41529 0.52360 0.53220 0.97876 1.38186 1.49382 1.53941 2.17020 2.31866 2.64075 2.86118 2.98057 3.46440 3.50530 3.64200 3.82708 3.93364 3.95409 4.18222 4.24149 4.31870 4.33758 4.50211 4.50849 4.63465 4.64560 4.71628 4.88438 4.94720 5.03822 5.07977 5.16045 5.18268 5.30731 5.52524 5.57857 5.64245 5.66273 5.71204 5.83483 6.01182 6.08872 6.11669 6.20100 6.48657 6.68779 6.71384 6.84016 8.16962 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.010779 B = 0.004005 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.094061 B = 6989.701458 C = 7554.287316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.040 3.960 3 Si 0.974 3.026 4 H -0.269 1.269 5 H -0.259 1.259 6 H -0.243 1.243 7 C -0.471 4.471 8 H 0.094 0.906 9 C 0.163 3.837 10 C -0.184 4.184 11 C -0.076 4.076 12 C -0.250 4.250 13 C -0.017 4.017 14 C -0.792 4.792 15 S 2.719 3.281 16 O -0.999 6.999 17 O -1.010 7.010 18 N -1.105 6.105 19 C 0.095 3.905 20 C 0.154 3.846 21 H 0.120 0.880 22 O -0.560 6.560 23 C -0.128 4.128 24 C -0.122 4.122 25 C -0.127 4.127 26 C -0.125 4.125 27 C -0.126 4.126 28 C -0.121 4.121 29 H 0.295 0.705 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.422 0.578 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.386 0.614 38 H 0.130 0.870 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.188 -6.470 9.917 16.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.178 4.178 3 Si 0.793 3.207 4 H -0.194 1.194 5 H -0.183 1.183 6 H -0.166 1.166 7 C -0.499 4.499 8 H 0.112 0.888 9 C 0.159 3.841 10 C -0.204 4.204 11 C -0.094 4.094 12 C -0.270 4.270 13 C -0.037 4.037 14 C -0.886 4.886 15 S 2.816 3.184 16 O -0.990 6.990 17 O -1.000 7.000 18 N -0.866 5.866 19 C -0.032 4.032 20 C 0.093 3.907 21 H 0.138 0.862 22 O -0.368 6.368 23 C -0.129 4.129 24 C -0.140 4.140 25 C -0.145 4.145 26 C -0.142 4.142 27 C -0.144 4.144 28 C -0.139 4.139 29 H 0.106 0.894 30 H 0.133 0.867 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.258 0.742 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.236 0.764 38 H 0.148 0.852 39 H 0.158 0.842 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 12.398 -6.571 8.572 16.443 hybrid contribution -0.893 0.983 0.704 1.503 sum 11.505 -5.588 9.276 15.800 Atomic orbital electron populations 1.69814 1.08979 1.31337 1.33083 1.26777 0.95609 1.04739 0.90642 0.85311 0.79976 0.75753 0.79646 1.19441 1.18306 1.16606 1.20145 0.97234 0.91452 1.41089 0.88841 1.17298 0.90930 0.90442 0.85473 1.21586 0.99033 0.97392 1.02407 1.21249 0.97989 0.92921 0.97285 1.20882 1.00606 0.98095 1.07421 1.20568 0.94082 0.95333 0.93686 1.30122 1.26874 1.00886 1.30720 1.00367 0.73296 0.71616 0.73154 1.93495 1.86598 1.57347 1.61523 1.93419 1.86280 1.37990 1.82282 1.55202 1.49370 1.36826 1.45227 1.22004 0.97793 0.94575 0.88785 1.20909 0.94721 0.81191 0.93876 0.86199 1.86585 1.67093 1.28288 1.54819 1.20462 0.99145 0.97887 0.95395 1.21169 1.00024 1.00069 0.92769 1.21424 0.97957 0.95135 0.99946 1.21539 0.97065 0.98270 0.97370 1.21461 1.00323 0.99467 0.93150 1.21290 0.97219 0.94738 1.00617 0.89406 0.86674 0.86006 0.85580 0.86111 0.74196 0.89762 0.91347 0.76377 0.85194 0.84211 0.83842 0.83842 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.10 10.84 21.83 0.24 -39.86 16 2 C 0.04 1.94 5.25 85.26 0.45 2.38 16 3 Si 0.97 36.66 29.57 68.60 2.03 38.69 16 4 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 5 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 6 H -0.24 -8.63 7.11 99.48 0.71 -7.92 16 7 C -0.47 -23.66 7.63 23.46 0.18 -23.48 16 8 H 0.09 4.40 5.83 -2.91 -0.02 4.39 16 9 C 0.16 8.29 5.55 -21.29 -0.12 8.17 16 10 C -0.18 -9.06 8.66 22.73 0.20 -8.86 16 11 C -0.08 -3.28 10.02 22.22 0.22 -3.05 16 12 C -0.25 -10.39 10.05 22.46 0.23 -10.17 16 13 C -0.02 -0.75 9.54 22.22 0.21 -0.54 16 14 C -0.79 -37.58 5.90 22.73 0.13 -37.45 16 15 S 2.72 118.74 4.96 -56.49 -0.28 118.46 16 16 O -1.00 -50.62 16.53 -128.00 -2.12 -52.74 16 17 O -1.01 -45.33 16.53 -128.00 -2.12 -47.45 16 18 N -1.11 -37.77 5.10 -187.48 -0.96 -38.73 16 19 C 0.10 2.72 5.81 86.38 0.50 3.22 16 20 C 0.15 3.61 3.30 29.85 0.10 3.71 16 21 H 0.12 2.62 8.00 -2.39 -0.02 2.60 16 22 O -0.56 -13.89 13.00 -148.98 -1.94 -15.82 16 23 C -0.13 -2.75 4.97 -19.87 -0.10 -2.85 16 24 C -0.12 -2.45 9.32 22.27 0.21 -2.24 16 25 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 26 C -0.12 -1.99 10.05 22.27 0.22 -1.76 16 27 C -0.13 -2.10 10.05 22.27 0.22 -1.87 16 28 C -0.12 -2.33 9.67 22.27 0.22 -2.12 16 29 H 0.29 13.13 8.30 -92.71 -0.77 12.36 16 30 H 0.12 5.79 6.21 -2.91 -0.02 5.78 16 31 H 0.12 4.46 8.06 -2.91 -0.02 4.43 16 32 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 33 H 0.12 4.91 7.32 -2.91 -0.02 4.89 16 34 H 0.42 13.38 8.35 -96.74 -0.81 12.57 16 35 H 0.08 2.39 7.82 -2.39 -0.02 2.37 16 36 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.39 7.84 7.50 -74.05 -0.56 7.28 16 38 H 0.13 2.29 6.78 -2.91 -0.02 2.27 16 39 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 40 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 41 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 42 H 0.14 2.21 8.04 -2.91 -0.02 2.18 16 Total: -1.00 -67.51 366.23 -2.33 -69.84 By element: Atomic # 1 Polarization: 46.81 SS G_CDS: -0.29 Total: 46.52 kcal Atomic # 6 Polarization: -82.00 SS G_CDS: 3.09 Total: -78.90 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: -0.72 Total: -78.59 kcal Atomic # 8 Polarization: -109.84 SS G_CDS: -6.17 Total: -116.01 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.03 Total: 38.69 kcal Atomic # 16 Polarization: 118.74 SS G_CDS: -0.28 Total: 118.46 kcal Total: -67.51 -2.33 -69.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365129852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.981 kcal (2) G-P(sol) polarization free energy of solvation -67.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds