Wall clock time and date at job start Wed Apr 1 2020 03:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46497 * 120.00099 * 2 1 4 4 S 1.65602 * 119.99924 * 179.97438 * 2 1 3 5 5 C 1.81401 * 108.33157 * 117.53431 * 4 2 1 6 6 O 1.42101 * 108.33335 * 242.46751 * 4 2 1 7 7 N 1.49355 * 108.73266 * 0.02562 * 4 2 1 8 8 C 1.32419 * 120.00081 * 179.97438 * 7 4 2 9 9 O 1.21540 * 119.99774 * 0.02562 * 8 7 4 10 10 C 1.50698 * 120.00154 * 180.02562 * 8 7 4 11 11 S 1.81001 * 109.47052 * 179.97438 * 10 8 7 12 12 C 1.76202 * 99.99784 * 179.97438 * 11 10 8 13 13 N 1.32388 * 126.26021 * 359.97438 * 12 11 10 14 14 N 1.28516 * 110.20609 * 180.02562 * 13 12 11 15 15 C 1.33098 * 109.74302 * 0.02562 * 14 13 12 16 16 C 1.39776 * 126.56257 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99778 * 186.09356 * 16 15 14 18 18 C 1.40085 * 120.00068 * 6.08606 * 16 15 14 19 19 N 1.30808 * 119.99942 * 184.12744 * 18 16 15 20 20 Si 1.86799 * 119.99669 * 4.13543 * 18 16 15 21 21 H 1.48509 * 109.46950 * 179.97438 * 20 18 16 22 22 H 1.48495 * 109.47355 * 299.99259 * 20 18 16 23 23 H 1.48501 * 109.47215 * 59.99928 * 20 18 16 24 24 N 1.36669 * 126.25987 * 180.30691 * 12 11 10 25 25 C 1.46505 * 127.15024 * 359.97438 * 24 12 11 26 26 H 1.09008 * 109.47284 * 270.00059 * 1 2 3 27 27 H 1.08997 * 109.47205 * 29.99810 * 1 2 3 28 28 H 1.09005 * 109.47521 * 149.99953 * 1 2 3 29 29 H 1.08999 * 109.47104 * 270.00022 * 3 2 1 30 30 H 1.08997 * 109.46979 * 30.00152 * 3 2 1 31 31 H 1.09003 * 109.47155 * 149.99985 * 3 2 1 32 32 H 1.09000 * 109.46814 * 301.10515 * 5 4 2 33 33 H 1.08996 * 109.47485 * 61.10417 * 5 4 2 34 34 H 1.08998 * 109.46996 * 181.11046 * 5 4 2 35 35 H 1.09003 * 109.46642 * 59.99770 * 10 8 7 36 36 H 1.08993 * 109.47041 * 300.00098 * 10 8 7 37 37 H 0.97000 * 120.00392 * 354.84969 * 19 18 16 38 38 H 1.08991 * 109.47295 * 270.14314 * 25 24 12 39 39 H 1.08996 * 109.46934 * 30.14387 * 25 24 12 40 40 H 1.09000 * 109.46691 * 150.13746 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2929 -1.4342 0.0006 5 6 3.2676 -1.5309 -1.5262 6 8 3.0564 -1.5090 1.1968 7 7 1.3078 -2.5568 0.0005 8 6 1.7331 -3.8108 0.0004 9 8 2.9250 -4.0483 0.0010 10 6 0.7391 -4.9435 -0.0003 11 16 1.6238 -6.5226 -0.0010 12 6 0.2595 -7.6376 -0.0009 13 7 -1.0223 -7.3066 0.0000 14 7 -1.7536 -8.3634 0.0002 15 6 -0.9794 -9.4460 0.0001 16 6 -1.4082 -10.7764 0.0007 17 1 -0.6886 -11.5756 0.0998 18 6 -2.7714 -11.0730 -0.1269 19 7 -3.1814 -12.3124 -0.0453 20 14 -4.0033 -9.6984 -0.4138 21 1 -5.3698 -10.2713 -0.5137 22 1 -3.9493 -8.7407 0.7197 23 1 -3.6703 -8.9908 -1.6762 24 7 0.3311 -9.0024 0.0046 25 6 1.5435 -9.8249 0.0110 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 2.3791 1.5833 -1.0277 30 1 1.6084 2.0283 0.5138 31 1 3.1499 1.1383 0.5138 32 1 2.6019 -1.4657 -2.3869 33 1 3.9806 -0.7070 -1.5551 34 1 3.8058 -2.4784 -1.5543 35 1 0.1137 -4.8774 -0.8906 36 1 0.1128 -4.8779 0.8894 37 1 -2.5362 -13.0329 0.0286 38 1 1.8484 -10.0307 -1.0150 39 1 2.3416 -9.2914 0.5271 40 1 1.3424 -10.7643 0.5258 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434456128.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:58 Heat of formation + Delta-G solvation = 44.683739 kcal Electronic energy + Delta-G solvation = -25526.636351 eV Core-core repulsion = 21632.717494 eV Total energy + Delta-G solvation = -3893.918858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.087 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -40.85638 -39.84307 -36.89305 -36.78396 -33.87751 -33.69712 -33.50743 -30.29345 -30.08066 -29.66254 -28.61137 -26.65751 -25.48198 -25.23980 -21.90545 -21.33822 -20.13723 -18.78737 -18.13712 -17.70324 -17.35623 -16.79727 -16.61993 -15.72139 -15.50499 -15.18437 -14.96748 -14.87320 -14.58396 -14.06619 -13.96116 -13.82532 -13.53676 -13.36820 -13.20470 -13.02549 -12.73083 -12.65317 -12.57488 -12.46512 -12.38153 -11.86463 -11.79437 -11.08323 -10.80998 -10.39839 -10.22039 -10.15266 -10.04948 -9.90121 -9.82341 -9.50678 -9.33767 -9.00764 -8.60895 -8.33520 -7.37656 -6.97803 -4.77956 -0.96798 1.69655 1.91037 2.36775 2.61474 2.75683 2.97719 3.61252 3.65298 3.75921 3.91278 3.93776 4.09917 4.20497 4.23414 4.39308 4.46111 4.54183 4.61348 4.75668 4.93303 5.03152 5.16256 5.21200 5.23810 5.38627 5.47147 5.47945 5.58756 5.80966 5.84965 5.99116 6.23197 6.44856 6.71376 7.19260 7.45225 7.59832 7.77672 8.10430 8.41313 8.61580 10.01399 10.17513 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.022802 B = 0.002480 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.643492 B =11285.986859 C =12268.099648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.967 5.967 3 C 0.081 3.919 4 S 2.557 3.443 5 C -0.647 4.647 6 O -0.940 6.940 7 N -1.135 6.135 8 C 0.582 3.418 9 O -0.567 6.567 10 C -0.099 4.099 11 S 0.012 5.988 12 C 0.057 3.943 13 N -0.272 5.272 14 N -0.416 5.416 15 C 0.344 3.656 16 C -0.492 4.492 17 H 0.083 0.917 18 C 0.064 3.936 19 N -0.809 5.809 20 Si 1.113 2.887 21 H -0.313 1.313 22 H -0.260 1.260 23 H -0.281 1.281 24 N -0.511 5.511 25 C 0.101 3.899 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.134 0.866 33 H 0.124 0.876 34 H 0.151 0.849 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.283 0.717 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.403 26.358 -4.330 29.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.802 5.802 3 C -0.064 4.064 4 S 2.659 3.341 5 C -0.804 4.804 6 O -0.918 6.918 7 N -1.045 6.045 8 C 0.367 3.633 9 O -0.447 6.447 10 C -0.254 4.254 11 S 0.237 5.763 12 C -0.317 4.317 13 N -0.116 5.116 14 N -0.266 5.266 15 C 0.101 3.899 16 C -0.533 4.533 17 H 0.101 0.899 18 C -0.158 4.158 19 N -0.434 5.434 20 Si 0.942 3.058 21 H -0.243 1.243 22 H -0.186 1.186 23 H -0.207 1.207 24 N -0.212 5.212 25 C -0.043 4.043 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.115 0.885 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.093 0.907 32 H 0.153 0.847 33 H 0.143 0.857 34 H 0.169 0.831 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.235 27.249 -3.670 29.338 hybrid contribution 2.103 -1.225 -0.373 2.462 sum 12.338 26.023 -4.042 29.082 Atomic orbital electron populations 1.21839 0.75453 1.04623 1.03605 1.55806 1.15857 1.17440 1.91075 1.21839 0.97110 0.84784 1.02706 1.07674 0.72215 0.75376 0.78853 1.30420 1.15621 1.12972 1.21349 1.93515 1.72811 1.84043 1.41427 1.70121 1.52400 1.12586 1.69379 1.18894 0.87788 0.84904 0.71762 1.90877 1.17584 1.86338 1.49912 1.23113 1.00921 0.91733 1.09633 1.85146 1.01751 0.94038 1.95328 1.25775 0.98797 0.86210 1.20897 1.74261 0.97584 1.23420 1.16289 1.73951 1.23053 0.93917 1.35659 1.21730 0.78109 0.96119 0.93956 1.19378 0.96234 0.88437 1.49258 0.89933 1.27355 0.98458 1.01281 0.88740 1.70674 1.39507 1.00463 1.32711 0.82692 0.71009 0.71646 0.80453 1.24274 1.18551 1.20709 1.45824 1.07237 1.04037 1.64064 1.21553 0.85276 0.95472 1.02047 0.91575 0.90415 0.88480 0.91567 0.88762 0.90692 0.84704 0.85687 0.83108 0.85632 0.85720 0.90611 0.92112 0.91026 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.42 10.49 59.84 0.63 1.05 16 2 N -0.97 -5.44 3.63 -129.21 -0.47 -5.90 16 3 C 0.08 0.19 10.74 59.85 0.64 0.84 16 4 S 2.56 24.72 4.01 -107.50 -0.43 24.29 16 5 C -0.65 -4.01 10.66 101.05 1.08 -2.93 16 6 O -0.94 -13.81 17.67 -46.07 -0.81 -14.63 16 7 N -1.13 -14.46 8.93 30.51 0.27 -14.18 16 8 C 0.58 9.35 7.43 -12.03 -0.09 9.26 16 9 O -0.57 -10.06 13.96 -5.51 -0.08 -10.14 16 10 C -0.10 -1.70 5.78 36.00 0.21 -1.50 16 11 S 0.01 0.24 20.92 -107.50 -2.25 -2.01 16 12 C 0.06 1.36 8.09 -87.28 -0.71 0.65 16 13 N -0.27 -7.15 11.62 30.89 0.36 -6.79 16 14 N -0.42 -11.80 7.52 31.26 0.23 -11.57 16 15 C 0.34 9.43 7.27 -154.81 -1.13 8.31 16 16 C -0.49 -13.50 9.50 -38.31 -0.36 -13.86 16 17 H 0.08 2.20 7.46 -52.49 -0.39 1.80 16 18 C 0.06 1.76 5.52 -17.29 -0.10 1.67 16 19 N -0.81 -22.08 13.65 55.56 0.76 -21.33 16 20 Si 1.11 28.47 25.90 -169.99 -4.40 24.06 16 21 H -0.31 -7.66 7.11 56.52 0.40 -7.26 16 22 H -0.26 -6.86 6.76 56.52 0.38 -6.47 16 23 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 24 N -0.51 -12.31 3.26 -123.18 -0.40 -12.71 16 25 C 0.10 1.89 10.89 59.85 0.65 2.54 16 26 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 27 H 0.08 0.16 8.07 -51.93 -0.42 -0.26 16 28 H 0.10 0.53 7.22 -51.93 -0.37 0.15 16 29 H 0.07 0.00 8.14 -51.93 -0.42 -0.43 16 30 H 0.09 0.10 8.07 -51.93 -0.42 -0.32 16 31 H 0.07 0.18 8.04 -51.93 -0.42 -0.24 16 32 H 0.13 0.53 8.14 -51.92 -0.42 0.11 16 33 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.15 1.27 6.99 -51.93 -0.36 0.91 16 35 H 0.13 2.03 8.14 -51.91 -0.42 1.61 16 36 H 0.12 2.17 8.14 -51.92 -0.42 1.75 16 37 H 0.28 7.34 8.72 -40.82 -0.36 6.98 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 1.18 7.85 -51.93 -0.41 0.78 16 40 H 0.08 1.42 7.48 -51.93 -0.39 1.03 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -39.46 365.29 -6.20 -45.66 By element: Atomic # 1 Polarization: -0.97 SS G_CDS: -5.31 Total: -6.28 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 0.83 Total: 6.01 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: 0.75 Total: -72.48 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.89 Total: -24.77 kcal Atomic # 14 Polarization: 28.47 SS G_CDS: -4.40 Total: 24.06 kcal Atomic # 16 Polarization: 24.96 SS G_CDS: -2.68 Total: 22.28 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -39.46 -6.20 -45.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434456128.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.347 kcal (2) G-P(sol) polarization free energy of solvation -39.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds