Wall clock time and date at job start Wed Apr 1 2020 03:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46497 * 120.00099 * 2 1 4 4 S 1.65602 * 119.99924 * 179.97438 * 2 1 3 5 5 C 1.81401 * 108.33157 * 117.53431 * 4 2 1 6 6 O 1.42101 * 108.33335 * 242.46751 * 4 2 1 7 7 N 1.49355 * 108.73266 * 0.02562 * 4 2 1 8 8 C 1.32419 * 120.00081 * 179.97438 * 7 4 2 9 9 O 1.21540 * 119.99774 * 0.02562 * 8 7 4 10 10 C 1.50698 * 120.00154 * 180.02562 * 8 7 4 11 11 S 1.81001 * 109.47052 * 179.97438 * 10 8 7 12 12 C 1.76202 * 99.99784 * 179.97438 * 11 10 8 13 13 N 1.32388 * 126.26021 * 359.97438 * 12 11 10 14 14 N 1.28516 * 110.20609 * 180.02562 * 13 12 11 15 15 C 1.33098 * 109.74302 * 0.02562 * 14 13 12 16 16 C 1.39776 * 126.56257 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99778 * 186.09356 * 16 15 14 18 18 C 1.40085 * 120.00068 * 6.08606 * 16 15 14 19 19 N 1.30808 * 119.99942 * 184.12744 * 18 16 15 20 20 Si 1.86799 * 119.99669 * 4.13543 * 18 16 15 21 21 H 1.48509 * 109.46950 * 179.97438 * 20 18 16 22 22 H 1.48495 * 109.47355 * 299.99259 * 20 18 16 23 23 H 1.48501 * 109.47215 * 59.99928 * 20 18 16 24 24 N 1.36669 * 126.25987 * 180.30691 * 12 11 10 25 25 C 1.46505 * 127.15024 * 359.97438 * 24 12 11 26 26 H 1.09008 * 109.47284 * 270.00059 * 1 2 3 27 27 H 1.08997 * 109.47205 * 29.99810 * 1 2 3 28 28 H 1.09005 * 109.47521 * 149.99953 * 1 2 3 29 29 H 1.08999 * 109.47104 * 270.00022 * 3 2 1 30 30 H 1.08997 * 109.46979 * 30.00152 * 3 2 1 31 31 H 1.09003 * 109.47155 * 149.99985 * 3 2 1 32 32 H 1.09000 * 109.46814 * 301.10515 * 5 4 2 33 33 H 1.08996 * 109.47485 * 61.10417 * 5 4 2 34 34 H 1.08998 * 109.46996 * 181.11046 * 5 4 2 35 35 H 1.09003 * 109.46642 * 59.99770 * 10 8 7 36 36 H 1.08993 * 109.47041 * 300.00098 * 10 8 7 37 37 H 0.97000 * 120.00392 * 354.84969 * 19 18 16 38 38 H 1.08991 * 109.47295 * 270.14314 * 25 24 12 39 39 H 1.08996 * 109.46934 * 30.14387 * 25 24 12 40 40 H 1.09000 * 109.46691 * 150.13746 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2929 -1.4342 0.0006 5 6 3.2676 -1.5309 -1.5262 6 8 3.0564 -1.5090 1.1968 7 7 1.3078 -2.5568 0.0005 8 6 1.7331 -3.8108 0.0004 9 8 2.9250 -4.0483 0.0010 10 6 0.7391 -4.9435 -0.0003 11 16 1.6238 -6.5226 -0.0010 12 6 0.2595 -7.6376 -0.0009 13 7 -1.0223 -7.3066 0.0000 14 7 -1.7536 -8.3634 0.0002 15 6 -0.9794 -9.4460 0.0001 16 6 -1.4082 -10.7764 0.0007 17 1 -0.6886 -11.5756 0.0998 18 6 -2.7714 -11.0730 -0.1269 19 7 -3.1814 -12.3124 -0.0453 20 14 -4.0033 -9.6984 -0.4138 21 1 -5.3698 -10.2713 -0.5137 22 1 -3.9493 -8.7407 0.7197 23 1 -3.6703 -8.9908 -1.6762 24 7 0.3311 -9.0024 0.0046 25 6 1.5435 -9.8249 0.0110 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 2.3791 1.5833 -1.0277 30 1 1.6084 2.0283 0.5138 31 1 3.1499 1.1383 0.5138 32 1 2.6019 -1.4657 -2.3869 33 1 3.9806 -0.7070 -1.5551 34 1 3.8058 -2.4784 -1.5543 35 1 0.1137 -4.8774 -0.8906 36 1 0.1128 -4.8779 0.8894 37 1 -2.5362 -13.0329 0.0286 38 1 1.8484 -10.0307 -1.0150 39 1 2.3416 -9.2914 0.5271 40 1 1.3424 -10.7643 0.5258 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434456128.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:58 Heat of formation + Delta-G solvation = 14.240977 kcal Electronic energy + Delta-G solvation = -25527.956449 eV Core-core repulsion = 21632.717494 eV Total energy + Delta-G solvation = -3895.238955 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.087 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.83019 -41.00957 -37.70907 -37.28147 -35.91973 -35.38664 -34.74967 -32.06943 -31.21083 -30.60425 -28.96704 -28.39196 -27.20408 -25.87974 -23.36729 -22.94348 -22.00411 -20.17243 -19.59413 -18.63085 -18.39910 -18.09553 -17.57809 -17.01533 -16.86474 -16.34706 -16.25429 -16.02922 -15.76478 -15.51068 -15.25861 -14.82733 -14.55726 -14.49966 -14.30441 -14.21629 -14.04764 -13.74233 -13.52109 -13.45221 -13.31256 -13.08156 -12.97551 -12.83172 -12.43198 -11.96574 -11.74486 -11.55606 -11.46891 -11.37945 -11.24106 -11.03185 -10.89051 -10.55513 -10.35094 -10.27674 -9.47465 -8.70718 -6.84374 -1.64571 0.20458 0.99553 1.00914 1.09934 1.36629 1.56436 1.62155 1.79655 1.96534 2.14430 2.22973 2.45081 3.04094 3.06351 3.49155 3.56041 3.88241 3.93319 3.95364 4.10734 4.35309 4.35506 4.46997 4.48838 4.49931 4.57381 4.70332 4.71394 4.74303 4.81948 4.90710 5.01299 5.10277 5.25074 5.32437 5.38864 5.69042 6.02435 6.40883 6.58467 6.59195 7.94122 8.16065 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.022802 B = 0.002480 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.643492 B =11285.986859 C =12268.099648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.957 5.957 3 C 0.066 3.934 4 S 2.549 3.451 5 C -0.620 4.620 6 O -1.001 7.001 7 N -1.151 6.151 8 C 0.582 3.418 9 O -0.594 6.594 10 C -0.103 4.103 11 S 0.043 5.957 12 C 0.073 3.927 13 N -0.306 5.306 14 N -0.445 5.445 15 C 0.325 3.675 16 C -0.507 4.507 17 H 0.084 0.916 18 C 0.041 3.959 19 N -0.822 5.822 20 Si 1.146 2.854 21 H -0.297 1.297 22 H -0.277 1.277 23 H -0.292 1.292 24 N -0.513 5.513 25 C 0.092 3.908 26 H 0.055 0.945 27 H 0.113 0.887 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.118 0.882 37 H 0.286 0.714 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.894 29.128 -5.825 32.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.793 5.793 3 C -0.078 4.078 4 S 2.656 3.344 5 C -0.780 4.780 6 O -0.979 6.979 7 N -1.058 6.058 8 C 0.366 3.634 9 O -0.476 6.476 10 C -0.257 4.257 11 S 0.267 5.733 12 C -0.303 4.303 13 N -0.148 5.148 14 N -0.294 5.294 15 C 0.078 3.922 16 C -0.548 4.548 17 H 0.102 0.898 18 C -0.178 4.178 19 N -0.448 5.448 20 Si 0.974 3.026 21 H -0.226 1.226 22 H -0.204 1.204 23 H -0.219 1.219 24 N -0.213 5.213 25 C -0.050 4.050 26 H 0.074 0.926 27 H 0.132 0.868 28 H 0.106 0.894 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.091 0.909 32 H 0.185 0.815 33 H 0.184 0.816 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.136 0.864 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.693 30.016 -5.132 32.619 hybrid contribution 1.850 -1.762 0.044 2.555 sum 13.543 28.254 -5.088 31.743 Atomic orbital electron populations 1.22004 0.74804 1.05914 1.03457 1.55654 1.16009 1.16476 1.91172 1.22272 0.97011 0.83176 1.05305 1.07471 0.71954 0.75508 0.79478 1.30194 1.15801 1.13832 1.18188 1.93468 1.73886 1.85424 1.45126 1.69710 1.54824 1.12147 1.69078 1.18631 0.86955 0.85819 0.71989 1.90856 1.18268 1.86771 1.51743 1.23222 1.01375 0.91359 1.09762 1.85116 0.99494 0.94053 1.94604 1.26644 0.99604 0.87029 1.16980 1.74199 0.98678 1.23106 1.18865 1.73850 1.24501 0.94687 1.36340 1.21821 0.79568 0.96009 0.94795 1.19394 0.96372 0.88637 1.50407 0.89841 1.27796 0.99317 1.01914 0.88822 1.70667 1.39701 1.00559 1.33839 0.82217 0.71102 0.70255 0.79004 1.22614 1.20414 1.21939 1.46171 1.07804 1.04636 1.62700 1.21916 0.83842 0.95405 1.03865 0.92584 0.86841 0.89424 0.88043 0.87118 0.90922 0.81531 0.81580 0.84768 0.84893 0.86398 0.90300 0.90090 0.88623 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 10.49 127.77 1.34 1.95 16 2 N -0.96 -8.40 3.63 -562.70 -2.04 -10.44 16 3 C 0.07 0.08 10.74 127.77 1.37 1.46 16 4 S 2.55 45.70 4.01 -56.49 -0.23 45.47 16 5 C -0.62 -5.44 10.66 113.37 1.21 -4.23 16 6 O -1.00 -29.49 17.67 -138.62 -2.45 -31.94 16 7 N -1.15 -28.75 8.93 -176.98 -1.58 -30.33 16 8 C 0.58 18.54 7.43 88.02 0.65 19.19 16 9 O -0.59 -20.86 13.96 6.52 0.09 -20.77 16 10 C -0.10 -3.52 5.78 71.24 0.41 -3.10 16 11 S 0.04 1.61 20.92 -56.49 -1.18 0.43 16 12 C 0.07 3.41 8.09 179.18 1.45 4.86 16 13 N -0.31 -16.20 11.62 -56.17 -0.65 -16.86 16 14 N -0.44 -25.59 7.52 -55.02 -0.41 -26.00 16 15 C 0.32 17.91 7.27 133.23 0.97 18.88 16 16 C -0.51 -28.05 9.50 23.09 0.22 -27.83 16 17 H 0.08 4.47 7.46 -2.91 -0.02 4.45 16 18 C 0.04 2.30 5.52 85.29 0.47 2.77 16 19 N -0.82 -44.98 13.65 21.86 0.30 -44.68 16 20 Si 1.15 58.88 25.90 68.60 1.78 60.66 16 21 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 22 H -0.28 -14.93 6.76 99.48 0.67 -14.26 16 23 H -0.29 -15.39 7.11 99.48 0.71 -14.68 16 24 N -0.51 -24.41 3.26 -543.63 -1.77 -26.18 16 25 C 0.09 3.28 10.89 127.77 1.39 4.67 16 26 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.11 0.06 8.07 -2.39 -0.02 0.04 16 28 H 0.09 0.84 7.22 -2.38 -0.02 0.82 16 29 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 30 H 0.11 -0.16 8.07 -2.39 -0.02 -0.18 16 31 H 0.07 0.15 8.04 -2.39 -0.02 0.14 16 32 H 0.17 0.49 8.14 -2.39 -0.02 0.48 16 33 H 0.17 0.16 8.14 -2.39 -0.02 0.14 16 34 H 0.13 1.92 6.99 -2.39 -0.02 1.91 16 35 H 0.13 4.29 8.14 -2.39 -0.02 4.27 16 36 H 0.12 4.18 8.14 -2.40 -0.02 4.16 16 37 H 0.29 14.89 8.72 -92.71 -0.81 14.08 16 38 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.10 2.94 7.85 -2.39 -0.02 2.92 16 40 H 0.08 2.93 7.48 -2.39 -0.02 2.92 16 Total: -1.00 -88.19 365.29 2.32 -85.87 By element: Atomic # 1 Polarization: -4.82 SS G_CDS: 0.99 Total: -3.83 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 9.49 Total: 18.61 kcal Atomic # 7 Polarization: -148.33 SS G_CDS: -6.16 Total: -154.49 kcal Atomic # 8 Polarization: -50.35 SS G_CDS: -2.36 Total: -52.71 kcal Atomic # 14 Polarization: 58.88 SS G_CDS: 1.78 Total: 60.66 kcal Atomic # 16 Polarization: 47.31 SS G_CDS: -1.41 Total: 45.90 kcal Total: -88.19 2.32 -85.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434456128.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.109 kcal (2) G-P(sol) polarization free energy of solvation -88.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds