Wall clock time and date at job start Wed Apr 1 2020 04:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47077 * 2 1 4 4 N 1.46503 * 109.46971 * 239.99686 * 2 1 3 5 5 S 1.65598 * 119.99610 * 98.77332 * 4 2 1 6 6 O 1.42105 * 106.40121 * 177.47690 * 5 4 2 7 7 O 1.42094 * 106.40561 * 310.39256 * 5 4 2 8 8 C 1.76206 * 107.22209 * 63.93480 * 5 4 2 9 9 C 1.37631 * 120.12535 * 247.32045 * 8 5 4 10 10 C 1.38617 * 120.24393 * 180.02562 * 9 8 5 11 11 C 1.38653 * 120.50223 * 359.97438 * 10 9 8 12 12 C 1.37599 * 120.24876 * 0.02562 * 11 10 9 13 13 C 1.40696 * 120.12275 * 67.04525 * 8 5 4 14 14 C 1.41399 * 120.24952 * 359.97438 * 13 8 5 15 15 H 1.07997 * 119.99518 * 331.07994 * 14 13 8 16 16 C 1.39941 * 120.00183 * 151.08023 * 14 13 8 17 17 N 1.30820 * 120.00107 * 348.79291 * 16 14 13 18 18 Si 1.86798 * 120.00114 * 168.79724 * 16 14 13 19 19 H 1.48505 * 109.46857 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47511 * 119.99674 * 18 16 14 21 21 H 1.48500 * 109.46835 * 240.00080 * 18 16 14 22 22 C 1.50699 * 109.47443 * 119.99884 * 2 1 3 23 23 C 1.38282 * 119.97299 * 79.97650 * 22 2 1 24 24 C 1.38254 * 120.11064 * 180.02562 * 23 22 2 25 25 C 1.38169 * 120.05302 * 359.97438 * 24 23 22 26 26 C 1.38706 * 119.94581 * 359.77176 * 25 24 23 27 27 O 1.35896 * 120.05495 * 180.25593 * 26 25 24 28 28 C 1.38131 * 119.97104 * 260.00307 * 22 2 1 29 29 H 1.09009 * 109.46888 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47280 * 300.00105 * 1 2 3 31 31 H 1.09001 * 109.47556 * 60.00255 * 1 2 3 32 32 H 0.96999 * 120.00234 * 278.76865 * 4 2 1 33 33 H 1.07998 * 119.87915 * 0.02562 * 9 8 5 34 34 H 1.08003 * 119.74784 * 179.97438 * 10 9 8 35 35 H 1.08006 * 119.87690 * 179.97438 * 11 10 9 36 36 H 1.08006 * 120.12617 * 179.97438 * 12 11 10 37 37 H 0.97004 * 120.00188 * 180.02562 * 17 16 14 38 38 H 1.07994 * 119.94600 * 0.02562 * 23 22 2 39 39 H 1.07999 * 119.97047 * 180.02562 * 24 23 22 40 40 H 1.08002 * 120.02082 * 180.02562 * 25 24 23 41 41 H 0.96703 * 114.00313 * 270.24695 * 27 26 25 42 42 H 1.07998 * 120.02550 * 359.97438 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6907 -1.1962 5 16 2.5004 0.1829 -2.5177 6 8 2.9684 -0.7596 -3.4728 7 8 1.4585 1.1106 -2.7876 8 6 3.9008 1.1353 -2.0310 9 6 3.8130 2.5070 -1.9619 10 6 4.9133 3.2587 -1.5797 11 6 6.1127 2.6396 -1.2627 12 6 6.2233 1.2695 -1.3249 13 6 5.1112 0.4958 -1.7060 14 6 5.2112 -0.9133 -1.7673 15 1 4.3370 -1.5245 -1.5983 16 6 6.4429 -1.5159 -2.0470 17 7 7.4467 -0.7888 -2.4656 18 14 6.6537 -3.3583 -1.8227 19 1 5.3779 -3.9476 -1.3426 20 1 7.0269 -3.9755 -3.1207 21 1 7.7237 -3.6164 -0.8259 22 6 2.0323 -0.7104 1.2304 23 6 2.0661 -2.0923 1.2649 24 6 2.5260 -2.7470 2.3925 25 6 2.9536 -2.0214 3.4878 26 6 2.9257 -0.6350 3.4537 27 8 3.3506 0.0809 4.5278 28 6 2.4582 0.0195 2.3231 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.0592 -1.6597 -1.2140 33 1 2.8835 2.9997 -2.2062 34 1 4.8356 4.3347 -1.5286 35 1 6.9637 3.2351 -0.9666 36 1 7.1587 0.7893 -1.0779 37 1 8.3004 -1.2066 -2.6598 38 1 1.7327 -2.6612 0.4097 39 1 2.5517 -3.8264 2.4168 40 1 3.3131 -2.5333 4.3682 41 1 2.6549 0.2765 5.1703 42 1 2.4317 1.0988 2.2956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434569205.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:06 Heat of formation + Delta-G solvation = -78.793391 kcal Electronic energy + Delta-G solvation = -29074.334067 eV Core-core repulsion = 25110.864480 eV Total energy + Delta-G solvation = -3963.469587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.82653 -37.59610 -37.36953 -36.23564 -35.22037 -34.83306 -33.86917 -31.05142 -30.22289 -29.57396 -29.50267 -28.76568 -25.52973 -23.70156 -22.61691 -21.63755 -21.17887 -20.83296 -18.72350 -18.13553 -17.69021 -17.00932 -16.46307 -16.03511 -15.71560 -15.41219 -15.24838 -14.82608 -14.35266 -14.18545 -13.85196 -13.48627 -13.37777 -13.26194 -13.11336 -12.75845 -12.43142 -12.12021 -11.94284 -11.88525 -11.52924 -11.43080 -11.28117 -11.21866 -11.14915 -11.07543 -11.02215 -11.01421 -10.69566 -10.48218 -10.34228 -9.88640 -9.53986 -9.42988 -8.90602 -8.73870 -8.51406 -8.02283 -7.58299 -7.01276 -4.73756 1.29695 1.36922 1.56599 2.34732 2.73573 2.97659 3.03442 3.11604 3.66579 3.78649 3.91688 4.21228 4.43081 4.65107 4.81027 4.93338 5.16074 5.24565 5.29170 5.33801 5.45428 5.56934 5.63377 5.67603 5.89249 5.93050 6.01084 6.05569 6.24365 6.26669 6.32645 6.41778 6.46333 6.47140 6.71318 6.79780 6.86004 6.96574 7.09893 7.32288 7.47124 7.52237 7.66209 7.68852 7.82510 7.91081 8.30960 8.52249 8.66813 9.91645 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.008241 B = 0.005812 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3396.983771 B = 4816.353562 C = 5667.224603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.197 3.803 3 H 0.095 0.905 4 N -1.116 6.116 5 S 2.697 3.303 6 O -0.963 6.963 7 O -0.996 6.996 8 C -0.776 4.776 9 C -0.005 4.005 10 C -0.249 4.249 11 C -0.077 4.077 12 C -0.155 4.155 13 C 0.188 3.812 14 C -0.439 4.439 15 H 0.087 0.913 16 C 0.080 3.920 17 N -0.777 5.777 18 Si 0.915 3.085 19 H -0.254 1.254 20 H -0.268 1.268 21 H -0.270 1.270 22 C -0.060 4.060 23 C -0.114 4.114 24 C -0.102 4.102 25 C -0.150 4.150 26 C 0.105 3.895 27 O -0.498 6.498 28 C -0.132 4.132 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.410 0.590 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.125 0.875 37 H 0.287 0.713 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.385 0.615 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.649 -2.876 10.959 14.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.090 3.910 3 H 0.113 0.887 4 N -0.872 5.872 5 S 2.795 3.205 6 O -0.953 6.953 7 O -0.986 6.986 8 C -0.872 4.872 9 C -0.025 4.025 10 C -0.269 4.269 11 C -0.096 4.096 12 C -0.175 4.175 13 C 0.183 3.817 14 C -0.468 4.468 15 H 0.105 0.895 16 C -0.141 4.141 17 N -0.400 5.400 18 Si 0.738 3.262 19 H -0.177 1.177 20 H -0.193 1.193 21 H -0.195 1.195 22 C -0.061 4.061 23 C -0.132 4.132 24 C -0.120 4.120 25 C -0.168 4.168 26 C 0.061 3.939 27 O -0.308 6.308 28 C -0.151 4.151 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.244 0.756 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.143 0.857 37 H 0.098 0.902 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.241 0.759 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.313 -2.770 9.735 13.098 hybrid contribution 0.643 -0.803 0.793 1.299 sum -7.670 -3.573 10.528 13.507 Atomic orbital electron populations 1.22295 0.94335 1.02625 1.02966 1.19476 0.93930 0.95659 0.81983 0.88681 1.55922 1.81784 1.18619 1.30830 1.01221 0.73642 0.73167 0.72477 1.93549 1.81805 1.62252 1.57724 1.93449 1.56822 1.64545 1.83791 1.29829 1.17529 1.05461 1.34361 1.20248 0.97203 0.92120 0.92964 1.20481 0.94747 0.97525 1.14195 1.20900 0.95933 0.95165 0.97626 1.21525 0.99907 0.92511 1.03573 1.16994 0.89137 0.92609 0.82957 1.19852 0.95942 0.91481 1.39494 0.89520 1.25943 0.94834 1.01691 0.91642 1.69782 1.03026 1.38526 1.28691 0.86131 0.79862 0.81102 0.79119 1.17744 1.19332 1.19485 1.19881 0.97656 0.93869 0.94720 1.20931 1.00309 0.93871 0.98103 1.20968 0.98302 0.99814 0.92935 1.21358 1.02239 0.93330 0.99910 1.18389 0.97723 0.89609 0.88227 1.84871 1.38428 1.74444 1.33036 1.21273 0.99722 1.00609 0.93503 0.92133 0.91766 0.90691 0.75595 0.87442 0.88775 0.88861 0.85750 0.90220 0.85801 0.85719 0.85798 0.75947 0.85223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.49 37.15 0.35 -1.67 16 2 C 0.20 2.95 3.00 -69.08 -0.21 2.74 16 3 H 0.10 1.49 7.66 -51.93 -0.40 1.09 16 4 N -1.12 -19.10 4.63 -5.88 -0.03 -19.13 16 5 S 2.70 58.26 4.87 -107.50 -0.52 57.74 16 6 O -0.96 -23.81 16.40 -57.17 -0.94 -24.75 16 7 O -1.00 -22.01 16.65 -57.17 -0.95 -22.97 16 8 C -0.78 -18.51 5.77 -38.88 -0.22 -18.74 16 9 C -0.01 -0.12 9.53 -39.66 -0.38 -0.50 16 10 C -0.25 -5.47 10.05 -39.29 -0.39 -5.86 16 11 C -0.08 -1.76 10.02 -39.66 -0.40 -2.16 16 12 C -0.16 -3.90 8.66 -38.87 -0.34 -4.24 16 13 C 0.19 4.82 5.55 -106.82 -0.59 4.22 16 14 C -0.44 -11.11 7.59 -37.74 -0.29 -11.40 16 15 H 0.09 2.05 5.91 -52.49 -0.31 1.74 16 16 C 0.08 1.95 5.25 -17.34 -0.09 1.86 16 17 N -0.78 -19.38 10.86 55.55 0.60 -18.77 16 18 Si 0.91 18.36 29.57 -169.99 -5.03 13.33 16 19 H -0.25 -4.93 7.11 56.52 0.40 -4.53 16 20 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 22 C -0.06 -0.85 4.95 -104.65 -0.52 -1.37 16 23 C -0.11 -1.50 9.19 -39.56 -0.36 -1.86 16 24 C -0.10 -1.24 10.04 -39.60 -0.40 -1.64 16 25 C -0.15 -1.84 9.99 -39.43 -0.39 -2.24 16 26 C 0.10 1.39 6.70 -39.22 -0.26 1.13 16 27 O -0.50 -5.94 13.50 -19.41 -0.26 -6.21 16 28 C -0.13 -1.85 9.61 -39.43 -0.38 -2.23 16 29 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.01 8.05 -51.93 -0.42 0.60 16 32 H 0.41 6.28 7.00 -34.47 -0.24 6.03 16 33 H 0.11 2.22 7.32 -52.49 -0.38 1.84 16 34 H 0.09 1.80 8.06 -52.48 -0.42 1.37 16 35 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 36 H 0.12 3.17 6.23 -52.48 -0.33 2.84 16 37 H 0.29 6.42 8.30 -40.82 -0.34 6.08 16 38 H 0.12 1.45 6.80 -52.49 -0.36 1.09 16 39 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.39 2.46 9.06 45.56 0.41 2.88 16 42 H 0.13 1.70 8.04 -52.49 -0.42 1.28 16 LS Contribution 366.08 15.07 5.52 5.52 Total: -1.00 -32.46 366.08 -10.60 -43.05 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -4.12 Total: 16.12 kcal Atomic # 6 Polarization: -39.07 SS G_CDS: -4.87 Total: -43.94 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.58 Total: -37.90 kcal Atomic # 8 Polarization: -51.77 SS G_CDS: -2.15 Total: -53.92 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Atomic # 16 Polarization: 58.26 SS G_CDS: -0.52 Total: 57.74 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.46 -10.60 -43.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434569205.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.739 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds