Wall clock time and date at job start Wed Apr 1 2020 04:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34731 * 116.99947 * 2 1 4 4 O 1.21499 * 120.00151 * 0.02562 * 3 2 1 5 5 C 1.47580 * 119.99995 * 179.97438 * 3 2 1 6 6 N 1.31850 * 126.52431 * 359.97438 * 5 3 2 7 7 N 1.28469 * 110.06528 * 180.02562 * 6 5 3 8 8 C 1.46497 * 124.88323 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47211 * 305.02843 * 8 7 6 10 10 C 1.38303 * 119.93034 * 89.99737 * 9 8 7 11 11 C 1.38099 * 120.06408 * 180.02562 * 10 9 8 12 12 C 1.38873 * 119.93656 * 359.97438 * 11 10 9 13 13 O 1.35754 * 120.07268 * 180.02562 * 12 11 10 14 14 C 1.34829 * 116.99935 * 354.46689 * 13 12 11 15 15 H 1.07998 * 119.99409 * 5.05327 * 14 13 12 16 16 C 1.38651 * 120.00088 * 185.05715 * 14 13 12 17 17 N 1.31562 * 119.99726 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00090 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47211 * 359.97438 * 18 16 14 20 20 H 1.48508 * 109.47122 * 119.99816 * 18 16 14 21 21 H 1.48500 * 109.47339 * 239.99643 * 18 16 14 22 22 C 1.38882 * 119.85929 * 0.28297 * 12 11 10 23 23 C 1.38105 * 119.92822 * 359.41605 * 22 12 11 24 24 C 1.35044 * 110.24095 * 0.22663 * 7 6 5 25 25 C 1.35347 * 107.24235 * 359.62881 * 24 7 6 26 26 N 1.48015 * 127.25293 * 180.09369 * 25 24 7 27 27 O 1.21793 * 119.99459 * 0.31384 * 26 25 24 28 28 O 1.21802 * 120.00077 * 180.31327 * 26 25 24 29 29 H 1.09003 * 109.47289 * 60.00130 * 1 2 3 30 30 H 1.09000 * 109.47224 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47339 * 300.00370 * 1 2 3 32 32 H 1.08999 * 109.47769 * 185.02684 * 8 7 6 33 33 H 1.09000 * 109.47023 * 65.02271 * 8 7 6 34 34 H 1.07996 * 119.96548 * 359.97438 * 10 9 8 35 35 H 1.08006 * 120.03112 * 180.02562 * 11 10 9 36 36 H 0.97003 * 119.99701 * 179.97438 * 17 16 14 37 37 H 1.08005 * 120.03715 * 179.72094 * 22 12 11 38 38 H 1.08002 * 119.95910 * 180.27378 * 23 22 12 39 39 H 1.08001 * 126.38208 * 179.75018 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2005 0.0000 4 8 1.4019 2.2195 0.0005 5 6 3.5374 1.2777 0.0006 6 7 4.3765 0.2607 0.0016 7 7 5.5878 0.6887 0.0024 8 6 6.7781 -0.1653 0.0041 9 6 6.7098 -1.1199 1.1683 10 6 6.1070 -2.3550 1.0135 11 6 6.0424 -3.2316 2.0786 12 6 6.5840 -2.8722 3.3059 13 8 6.5225 -3.7321 4.3546 14 6 5.8229 -4.8702 4.1727 15 1 5.4120 -5.1020 3.2012 16 6 5.6310 -5.7429 5.2329 17 7 6.1320 -5.4606 6.4162 18 14 4.6623 -7.3201 4.9808 19 1 4.2097 -7.4027 3.5689 20 1 5.5262 -8.4869 5.2933 21 1 3.4805 -7.3243 5.8800 22 6 7.1839 -1.6291 3.4595 23 6 7.2509 -0.7593 2.3889 24 6 5.6062 2.0390 0.0069 25 6 4.3192 2.4578 0.0006 26 7 3.8317 3.8554 0.0004 27 8 4.6272 4.7776 0.0005 28 8 2.6352 4.0830 0.0001 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 7.6701 0.4546 0.0945 33 1 6.8212 -0.7304 -0.9270 34 1 5.6857 -2.6337 0.0590 35 1 5.5719 -4.1962 1.9570 36 1 5.9974 -6.0710 7.1580 37 1 7.6020 -1.3449 4.4139 38 1 7.7212 0.2057 2.5066 39 1 6.4844 2.6677 0.0123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001459240664.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:21 Heat of formation + Delta-G solvation = -13.937379 kcal Electronic energy + Delta-G solvation = -29352.572344 eV Core-core repulsion = 24845.621910 eV Total energy + Delta-G solvation = -4506.950434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.104 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.58872 -42.82826 -41.36786 -40.84519 -38.59527 -37.73717 -37.41236 -35.33750 -34.28674 -32.98651 -31.90296 -31.63165 -29.15644 -28.19290 -27.49696 -26.93979 -24.55522 -23.74815 -23.02108 -22.33145 -21.83250 -20.22793 -19.88736 -19.59740 -18.97704 -18.80367 -18.74637 -17.98023 -17.78838 -17.36558 -17.26268 -16.47423 -16.27658 -15.84565 -15.59708 -15.26886 -15.12353 -14.67194 -14.53172 -14.34919 -14.28809 -13.71807 -13.34928 -13.15287 -13.10394 -12.95560 -12.71817 -12.57898 -12.49109 -12.38127 -12.22614 -12.17089 -12.13203 -11.87751 -11.70861 -11.25373 -11.13134 -10.90161 -10.87032 -9.84793 -9.11465 -8.53637 -6.22027 -1.01372 -0.08975 0.03785 0.47651 0.55487 0.64939 1.10898 1.33052 1.40150 1.50868 1.60001 1.64162 2.13098 2.68514 2.82147 3.11013 3.14445 3.41790 3.43959 3.68535 3.83175 3.92422 4.09399 4.11997 4.23755 4.30279 4.31059 4.40788 4.52679 4.66694 4.71866 4.96509 5.03956 5.07607 5.14236 5.20015 5.28951 5.45877 5.60360 5.65956 5.96770 6.09705 6.12907 6.46032 6.62184 6.91447 7.69330 8.69162 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.012546 B = 0.002736 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.209557 B =10231.036594 C =11610.491394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.532 3.468 4 O -0.475 6.475 5 C 0.032 3.968 6 N -0.207 5.207 7 N -0.245 5.245 8 C 0.168 3.832 9 C -0.205 4.205 10 C -0.028 4.028 11 C -0.252 4.252 12 C 0.127 3.873 13 O -0.228 6.228 14 C -0.414 4.414 15 H 0.103 0.897 16 C -0.020 4.020 17 N -0.917 5.917 18 Si 1.017 2.983 19 H -0.250 1.250 20 H -0.267 1.267 21 H -0.270 1.270 22 C -0.215 4.215 23 C -0.037 4.037 24 C 0.125 3.875 25 C -0.147 4.147 26 N 0.060 4.940 27 O -0.152 6.152 28 O -0.173 6.173 29 H 0.073 0.927 30 H 0.133 0.867 31 H 0.065 0.935 32 H 0.176 0.824 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.116 0.884 36 H 0.274 0.726 37 H 0.113 0.887 38 H 0.163 0.837 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.155 11.362 -17.674 21.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.267 6.267 3 C 0.372 3.628 4 O -0.359 6.359 5 C -0.129 4.129 6 N -0.043 5.043 7 N -0.032 5.032 8 C 0.054 3.946 9 C -0.206 4.206 10 C -0.046 4.046 11 C -0.272 4.272 12 C 0.076 3.924 13 O -0.134 6.134 14 C -0.490 4.490 15 H 0.121 0.879 16 C -0.219 4.219 17 N -0.555 5.555 18 Si 0.836 3.164 19 H -0.174 1.174 20 H -0.192 1.192 21 H -0.195 1.195 22 C -0.235 4.235 23 C -0.055 4.055 24 C -0.023 4.023 25 C -0.244 4.244 26 N 0.577 4.423 27 O -0.369 6.369 28 O -0.382 6.382 29 H 0.092 0.908 30 H 0.151 0.849 31 H 0.084 0.916 32 H 0.194 0.806 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.134 0.866 36 H 0.083 0.917 37 H 0.131 0.869 38 H 0.181 0.819 39 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 0.345 9.644 -17.261 19.776 hybrid contribution -1.047 0.171 0.713 1.279 sum -0.702 9.815 -16.548 19.253 Atomic orbital electron populations 1.23683 0.73409 1.06062 1.03193 1.86626 1.25804 1.30769 1.83534 1.19641 0.86429 0.82546 0.74200 1.91066 1.65199 1.35665 1.43939 1.20721 0.92575 0.88829 1.10764 1.74073 0.90699 1.24594 1.14978 1.46691 1.05978 1.05254 1.45243 1.21682 0.81856 0.92051 0.99027 1.19445 1.08872 0.96421 0.95910 1.20981 0.93578 0.92503 0.97566 1.21251 1.09345 1.02766 0.93808 1.20090 0.93599 0.90613 0.88108 1.83943 1.64860 1.29181 1.35431 1.21869 1.32553 0.95829 0.98722 0.87928 1.26581 0.98371 1.03135 0.93764 1.70179 1.44623 1.38762 1.01921 0.84553 0.77289 0.74993 0.79572 1.17352 1.19163 1.19511 1.20507 1.08644 0.93066 1.01248 1.21028 0.95588 0.98537 0.90336 1.23488 0.98150 0.85675 0.94981 1.21151 0.94980 0.82233 1.26003 1.42529 1.00895 1.01485 0.97384 1.94476 1.52749 1.36594 1.53073 1.94771 0.98288 1.90311 1.54829 0.90788 0.84936 0.91623 0.80616 0.84395 0.84171 0.86637 0.91717 0.86871 0.81904 0.71622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.74 16 2 O -0.35 -9.39 10.58 -56.41 -0.60 -9.99 16 3 C 0.53 15.75 7.97 70.29 0.56 16.31 16 4 O -0.48 -15.84 13.24 27.64 0.37 -15.48 16 5 C 0.03 0.86 7.17 42.43 0.30 1.16 16 6 N -0.21 -4.90 11.71 -48.22 -0.56 -5.46 16 7 N -0.25 -3.65 3.40 -351.69 -1.20 -4.85 16 8 C 0.17 1.50 6.52 85.64 0.56 2.06 16 9 C -0.20 -4.35 5.22 -19.83 -0.10 -4.45 16 10 C -0.03 -0.78 9.69 22.25 0.22 -0.56 16 11 C -0.25 -9.92 9.17 22.39 0.21 -9.71 16 12 C 0.13 5.83 6.65 22.58 0.15 5.98 16 13 O -0.23 -13.14 9.76 -22.78 -0.22 -13.36 16 14 C -0.41 -23.23 9.49 67.92 0.64 -22.58 16 15 H 0.10 5.28 5.20 -2.91 -0.02 5.27 16 16 C -0.02 -1.12 5.49 84.83 0.47 -0.66 16 17 N -0.92 -54.87 13.67 21.61 0.30 -54.58 16 18 Si 1.02 41.55 29.55 68.60 2.03 43.58 16 19 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 20 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 21 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 22 C -0.22 -7.98 9.99 22.39 0.22 -7.75 16 23 C -0.04 -0.90 9.69 22.25 0.22 -0.68 16 24 C 0.13 1.57 11.15 83.53 0.93 2.50 16 25 C -0.15 -3.40 7.25 36.53 0.26 -3.14 16 26 N 0.06 1.70 4.45 -46.11 -0.21 1.49 16 27 O -0.15 -3.87 19.07 18.89 0.36 -3.50 16 28 O -0.17 -5.88 15.61 26.31 0.41 -5.46 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.18 -0.26 7.98 -2.39 -0.02 -0.28 16 33 H 0.14 0.67 8.08 -2.39 -0.02 0.65 16 34 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 35 H 0.12 4.78 5.64 -2.91 -0.02 4.77 16 36 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 37 H 0.11 4.25 8.06 -2.91 -0.02 4.22 16 38 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 39 H 0.27 0.21 8.06 -2.91 -0.02 0.19 16 Total: -1.00 -84.84 360.24 7.64 -77.20 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.13 Total: 10.21 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: 5.83 Total: -19.80 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -1.67 Total: -63.40 kcal Atomic # 8 Polarization: -48.11 SS G_CDS: 0.32 Total: -47.79 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -84.84 7.64 -77.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459240664.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.262 kcal (2) G-P(sol) polarization free energy of solvation -84.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds