Wall clock time and date at job start Wed Apr 1 2020 04:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38290 * 119.94054 * 2 1 4 4 C 1.38131 * 120.05096 * 179.76383 * 3 2 1 5 5 C 1.38746 * 119.94515 * 0.53289 * 4 3 2 6 6 O 1.35906 * 120.05743 * 179.74344 * 5 4 3 7 7 C 1.38714 * 119.89001 * 359.46825 * 5 4 3 8 8 C 1.50693 * 120.03047 * 180.22755 * 7 5 4 9 9 N 1.46496 * 109.47541 * 285.00634 * 8 7 5 10 10 S 1.65606 * 120.00371 * 165.00041 * 9 8 7 11 11 O 1.42094 * 106.39959 * 178.53699 * 10 9 8 12 12 O 1.42096 * 106.39845 * 311.45760 * 10 9 8 13 13 C 1.76197 * 107.21517 * 64.99660 * 10 9 8 14 14 C 1.38657 * 119.87715 * 269.72265 * 13 10 9 15 15 C 1.38606 * 120.50201 * 179.72541 * 14 13 10 16 16 C 1.37641 * 120.25223 * 0.55460 * 15 14 13 17 17 C 1.40699 * 119.73591 * 359.72767 * 16 15 14 18 18 C 1.41402 * 120.24144 * 180.02562 * 17 16 15 19 19 H 1.07993 * 120.00426 * 204.36921 * 18 17 16 20 20 C 1.39957 * 119.99566 * 24.37019 * 18 17 16 21 21 N 1.30818 * 120.00209 * 17.86256 * 20 18 17 22 22 Si 1.86803 * 119.99658 * 197.85917 * 20 18 17 23 23 H 1.48502 * 109.46708 * 60.00228 * 22 20 18 24 24 H 1.48501 * 109.46885 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47130 * 300.00255 * 22 20 18 26 26 C 1.37596 * 119.87694 * 90.00785 * 13 10 9 27 27 C 1.38171 * 119.94246 * 0.25399 * 7 5 4 28 28 H 1.08994 * 109.47407 * 269.97714 * 1 2 3 29 29 H 1.09003 * 109.46898 * 29.98021 * 1 2 3 30 30 H 1.09002 * 109.46692 * 149.97686 * 1 2 3 31 31 H 1.07997 * 119.97772 * 0.04985 * 3 2 1 32 32 H 1.08003 * 120.02457 * 180.27729 * 4 3 2 33 33 H 0.96699 * 113.99973 * 269.72575 * 6 5 4 34 34 H 1.09007 * 109.46992 * 45.00381 * 8 7 5 35 35 H 1.09001 * 109.47139 * 164.99872 * 8 7 5 36 36 H 0.97005 * 119.99414 * 344.99360 * 9 8 7 37 37 H 1.08001 * 119.74537 * 0.02562 * 14 13 10 38 38 H 1.08003 * 119.87764 * 180.25957 * 15 14 13 39 39 H 1.07998 * 120.13202 * 179.70532 * 16 15 14 40 40 H 0.97003 * 120.00245 * 179.97438 * 21 20 18 41 41 H 1.08003 * 120.12836 * 359.96623 * 26 13 10 42 42 H 1.08000 * 119.97283 * 179.97438 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5785 1.2010 0.0049 5 6 4.2734 0.0001 -0.0013 6 8 5.6325 0.0001 -0.0017 7 6 3.5788 -1.2005 -0.0013 8 6 4.3303 -2.5067 -0.0029 9 7 4.8825 -2.7508 -1.3376 10 16 6.0537 -3.9020 -1.5515 11 8 6.3494 -3.9201 -2.9412 12 8 7.0349 -3.6667 -0.5510 13 6 5.3257 -5.4623 -1.1773 14 6 5.3751 -5.9547 0.1180 15 6 4.8017 -7.1779 0.4280 16 6 4.1859 -7.9233 -0.5517 17 6 4.1349 -7.4362 -1.8707 18 6 3.5045 -8.1928 -2.8854 19 1 3.7844 -8.0497 -3.9185 20 6 2.5177 -9.1271 -2.5507 21 7 1.9291 -9.0673 -1.3839 22 14 2.0410 -10.4595 -3.7701 23 1 3.2305 -11.2910 -4.0847 24 1 0.9815 -11.3156 -3.1787 25 1 1.5326 -9.8313 -5.0160 26 6 4.7154 -6.1903 -2.1727 27 6 2.1970 -1.1979 -0.0004 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6559 2.1329 0.0008 32 1 4.1171 2.1372 0.0095 33 1 6.0255 0.0003 -0.8853 34 1 5.1421 -2.4596 0.7231 35 1 3.6515 -3.3168 0.2633 36 1 4.5620 -2.2382 -2.0963 37 1 5.8598 -5.3784 0.8922 38 1 4.8424 -7.5499 1.4411 39 1 3.7440 -8.8783 -0.3090 40 1 1.2449 -9.7147 -1.1520 41 1 4.6816 -5.8068 -3.1818 42 1 1.6557 -2.1324 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464107804.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:01 Heat of formation + Delta-G solvation = -84.361350 kcal Electronic energy + Delta-G solvation = -27516.313828 eV Core-core repulsion = 23552.602796 eV Total energy + Delta-G solvation = -3963.711032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.15300 -37.65448 -37.02742 -36.68190 -35.36247 -35.27622 -33.86415 -31.87961 -31.13975 -30.09276 -29.80345 -26.59555 -25.68550 -25.47369 -22.48975 -21.90507 -21.07761 -20.88823 -19.13706 -18.43163 -18.00031 -17.08322 -16.30946 -16.06542 -15.84584 -15.72839 -15.15964 -14.94335 -14.72657 -14.31148 -14.00084 -13.72489 -13.54181 -13.35292 -13.28953 -13.16998 -12.77247 -12.58966 -12.06658 -11.91599 -11.80035 -11.72767 -11.61358 -11.51628 -11.42049 -11.37382 -11.29078 -11.02463 -10.88901 -10.64634 -10.50798 -9.82107 -9.69395 -9.36284 -9.23191 -9.04254 -8.55557 -8.05545 -7.72344 -6.94738 -4.55408 0.84988 1.08932 1.23892 2.18178 2.62571 2.98072 3.00271 3.07213 3.32566 3.69624 3.81132 4.12990 4.22078 4.41452 4.50746 4.65439 4.70194 5.01153 5.09298 5.12110 5.35830 5.39403 5.41533 5.48710 5.53910 5.69271 5.85893 5.88587 5.96857 6.04852 6.12165 6.17374 6.35084 6.40363 6.64119 6.65993 6.74674 6.82832 7.01142 7.15969 7.21315 7.36985 7.56035 7.71472 7.79127 7.92721 8.38407 8.65073 8.70033 10.00629 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.011876 B = 0.003180 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.103889 B = 8802.219968 C =10192.226581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.098 4.098 3 C -0.102 4.102 4 C -0.146 4.146 5 C 0.117 3.883 6 O -0.492 6.492 7 C -0.115 4.115 8 C 0.165 3.835 9 N -1.118 6.118 10 S 2.689 3.311 11 O -0.973 6.973 12 O -0.971 6.971 13 C -0.632 4.632 14 C -0.150 4.150 15 C -0.120 4.120 16 C -0.119 4.119 17 C 0.092 3.908 18 C -0.461 4.461 19 H 0.082 0.918 20 C 0.076 3.924 21 N -0.794 5.794 22 Si 0.912 3.088 23 H -0.262 1.262 24 H -0.277 1.277 25 H -0.264 1.264 26 C -0.124 4.124 27 C -0.087 4.087 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.390 0.610 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.412 0.588 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.125 0.875 40 H 0.284 0.716 41 H 0.111 0.889 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.396 15.236 2.710 15.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.099 4.099 3 C -0.121 4.121 4 C -0.165 4.165 5 C 0.071 3.929 6 O -0.302 6.302 7 C -0.117 4.117 8 C 0.039 3.961 9 N -0.875 5.875 10 S 2.785 3.215 11 O -0.964 6.964 12 O -0.961 6.961 13 C -0.724 4.724 14 C -0.171 4.171 15 C -0.140 4.140 16 C -0.138 4.138 17 C 0.088 3.912 18 C -0.491 4.491 19 H 0.101 0.899 20 C -0.142 4.142 21 N -0.419 5.419 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.202 1.202 25 H -0.188 1.188 26 C -0.145 4.145 27 C -0.105 4.105 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.246 0.754 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.245 0.755 37 H 0.125 0.875 38 H 0.116 0.884 39 H 0.142 0.858 40 H 0.095 0.905 41 H 0.129 0.871 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.698 15.196 3.360 15.795 hybrid contribution -1.009 -0.916 -1.046 1.718 sum -3.708 14.280 2.313 14.933 Atomic orbital electron populations 1.20787 0.90889 1.02956 1.02434 1.19944 0.96367 0.92924 1.00618 1.20928 0.93492 0.97693 0.99950 1.21395 0.94543 0.97707 1.02837 1.18355 0.83208 0.91596 0.99696 1.84812 1.15545 1.96350 1.33451 1.20233 0.93968 0.94555 1.02960 1.20043 0.98137 0.93763 0.84144 1.55624 1.61258 1.55635 1.14976 1.01665 0.73094 0.73756 0.72969 1.93539 1.83081 1.87262 1.32469 1.93526 1.56352 1.85304 1.60904 1.29728 1.19304 1.21282 1.02076 1.20099 1.04834 0.98655 0.93485 1.20814 0.99582 0.95485 0.98103 1.21642 0.99134 0.99722 0.93329 1.17676 0.90198 0.90212 0.93085 1.19598 1.17175 1.17233 0.95050 0.89946 1.25929 0.94677 0.97583 0.96050 1.69767 1.18737 1.31998 1.21409 0.86300 0.78898 0.80332 0.80894 1.18671 1.20237 1.18818 1.20773 1.01867 0.95390 0.96507 1.21017 0.92788 0.98285 0.98457 0.91100 0.91602 0.91222 0.85751 0.85401 0.75365 0.88908 0.90389 0.75506 0.87532 0.88368 0.85752 0.90521 0.87083 0.84975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.00 0.36 -0.50 16 2 C -0.10 -0.96 5.88 -104.60 -0.62 -1.58 16 3 C -0.10 -0.93 9.69 -39.60 -0.38 -1.32 16 4 C -0.15 -1.46 9.99 -39.43 -0.39 -1.85 16 5 C 0.12 1.36 6.68 -39.22 -0.26 1.10 16 6 O -0.49 -5.77 12.84 -19.44 -0.25 -6.02 16 7 C -0.12 -1.40 5.29 -104.47 -0.55 -1.95 16 8 C 0.16 2.24 5.96 -5.20 -0.03 2.21 16 9 N -1.12 -15.80 5.99 -11.66 -0.07 -15.87 16 10 S 2.69 49.21 5.74 -107.50 -0.62 48.59 16 11 O -0.97 -19.96 17.27 -57.17 -0.99 -20.95 16 12 O -0.97 -19.46 16.73 -57.17 -0.96 -20.41 16 13 C -0.63 -13.58 5.94 -39.66 -0.24 -13.81 16 14 C -0.15 -3.20 9.53 -39.29 -0.37 -3.57 16 15 C -0.12 -2.67 10.02 -39.66 -0.40 -3.07 16 16 C -0.12 -2.91 8.70 -38.87 -0.34 -3.25 16 17 C 0.09 2.34 5.58 -106.82 -0.60 1.75 16 18 C -0.46 -11.73 9.06 -37.73 -0.34 -12.07 16 19 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 20 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 21 N -0.79 -19.33 10.95 55.55 0.61 -18.72 16 22 Si 0.91 17.87 29.60 -169.99 -5.03 12.84 16 23 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 24 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 25 H -0.26 -5.12 7.11 56.52 0.40 -4.71 16 26 C -0.12 -2.94 9.26 -38.88 -0.36 -3.30 16 27 C -0.09 -0.97 9.32 -39.60 -0.37 -1.34 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 32 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.39 3.23 9.06 45.56 0.41 3.64 16 34 H 0.09 1.33 7.61 -51.93 -0.40 0.93 16 35 H 0.08 1.06 7.95 -51.93 -0.41 0.65 16 36 H 0.41 4.93 8.64 -34.48 -0.30 4.63 16 37 H 0.11 2.06 7.59 -52.49 -0.40 1.66 16 38 H 0.10 1.90 8.06 -52.48 -0.42 1.48 16 39 H 0.12 3.11 6.16 -52.49 -0.32 2.79 16 40 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 41 H 0.11 2.53 7.60 -52.48 -0.40 2.13 16 42 H 0.13 1.39 8.00 -52.49 -0.42 0.97 16 LS Contribution 373.78 15.07 5.63 5.63 Total: -1.00 -31.47 373.78 -10.96 -42.43 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -4.31 Total: 13.30 kcal Atomic # 6 Polarization: -35.84 SS G_CDS: -4.98 Total: -40.82 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.54 Total: -34.59 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -2.19 Total: -47.38 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Atomic # 16 Polarization: 49.21 SS G_CDS: -0.62 Total: 48.59 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.47 -10.96 -42.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464107804.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.929 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds