Wall clock time and date at job start Wed Apr 1 2020 04:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38290 * 119.94054 * 2 1 4 4 C 1.38131 * 120.05096 * 179.76383 * 3 2 1 5 5 C 1.38746 * 119.94515 * 0.53289 * 4 3 2 6 6 O 1.35906 * 120.05743 * 179.74344 * 5 4 3 7 7 C 1.38714 * 119.89001 * 359.46825 * 5 4 3 8 8 C 1.50693 * 120.03047 * 180.22755 * 7 5 4 9 9 N 1.46496 * 109.47541 * 285.00634 * 8 7 5 10 10 S 1.65606 * 120.00371 * 165.00041 * 9 8 7 11 11 O 1.42094 * 106.39959 * 178.53699 * 10 9 8 12 12 O 1.42096 * 106.39845 * 311.45760 * 10 9 8 13 13 C 1.76197 * 107.21517 * 64.99660 * 10 9 8 14 14 C 1.38657 * 119.87715 * 269.72265 * 13 10 9 15 15 C 1.38606 * 120.50201 * 179.72541 * 14 13 10 16 16 C 1.37641 * 120.25223 * 0.55460 * 15 14 13 17 17 C 1.40699 * 119.73591 * 359.72767 * 16 15 14 18 18 C 1.41402 * 120.24144 * 180.02562 * 17 16 15 19 19 H 1.07993 * 120.00426 * 204.36921 * 18 17 16 20 20 C 1.39957 * 119.99566 * 24.37019 * 18 17 16 21 21 N 1.30818 * 120.00209 * 17.86256 * 20 18 17 22 22 Si 1.86803 * 119.99658 * 197.85917 * 20 18 17 23 23 H 1.48502 * 109.46708 * 60.00228 * 22 20 18 24 24 H 1.48501 * 109.46885 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47130 * 300.00255 * 22 20 18 26 26 C 1.37596 * 119.87694 * 90.00785 * 13 10 9 27 27 C 1.38171 * 119.94246 * 0.25399 * 7 5 4 28 28 H 1.08994 * 109.47407 * 269.97714 * 1 2 3 29 29 H 1.09003 * 109.46898 * 29.98021 * 1 2 3 30 30 H 1.09002 * 109.46692 * 149.97686 * 1 2 3 31 31 H 1.07997 * 119.97772 * 0.04985 * 3 2 1 32 32 H 1.08003 * 120.02457 * 180.27729 * 4 3 2 33 33 H 0.96699 * 113.99973 * 269.72575 * 6 5 4 34 34 H 1.09007 * 109.46992 * 45.00381 * 8 7 5 35 35 H 1.09001 * 109.47139 * 164.99872 * 8 7 5 36 36 H 0.97005 * 119.99414 * 344.99360 * 9 8 7 37 37 H 1.08001 * 119.74537 * 0.02562 * 14 13 10 38 38 H 1.08003 * 119.87764 * 180.25957 * 15 14 13 39 39 H 1.07998 * 120.13202 * 179.70532 * 16 15 14 40 40 H 0.97003 * 120.00245 * 179.97438 * 21 20 18 41 41 H 1.08003 * 120.12836 * 359.96623 * 26 13 10 42 42 H 1.08000 * 119.97283 * 179.97438 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5785 1.2010 0.0049 5 6 4.2734 0.0001 -0.0013 6 8 5.6325 0.0001 -0.0017 7 6 3.5788 -1.2005 -0.0013 8 6 4.3303 -2.5067 -0.0029 9 7 4.8825 -2.7508 -1.3376 10 16 6.0537 -3.9020 -1.5515 11 8 6.3494 -3.9201 -2.9412 12 8 7.0349 -3.6667 -0.5510 13 6 5.3257 -5.4623 -1.1773 14 6 5.3751 -5.9547 0.1180 15 6 4.8017 -7.1779 0.4280 16 6 4.1859 -7.9233 -0.5517 17 6 4.1349 -7.4362 -1.8707 18 6 3.5045 -8.1928 -2.8854 19 1 3.7844 -8.0497 -3.9185 20 6 2.5177 -9.1271 -2.5507 21 7 1.9291 -9.0673 -1.3839 22 14 2.0410 -10.4595 -3.7701 23 1 3.2305 -11.2910 -4.0847 24 1 0.9815 -11.3156 -3.1787 25 1 1.5326 -9.8313 -5.0160 26 6 4.7154 -6.1903 -2.1727 27 6 2.1970 -1.1979 -0.0004 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6559 2.1329 0.0008 32 1 4.1171 2.1372 0.0095 33 1 6.0255 0.0003 -0.8853 34 1 5.1421 -2.4596 0.7231 35 1 3.6515 -3.3168 0.2633 36 1 4.5620 -2.2382 -2.0963 37 1 5.8598 -5.3784 0.8922 38 1 4.8424 -7.5499 1.4411 39 1 3.7440 -8.8783 -0.3090 40 1 1.2449 -9.7147 -1.1520 41 1 4.6816 -5.8068 -3.1818 42 1 1.6557 -2.1324 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464107804.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:00 Heat of formation + Delta-G solvation = -105.771723 kcal Electronic energy + Delta-G solvation = -27517.242252 eV Core-core repulsion = 23552.602796 eV Total energy + Delta-G solvation = -3964.639455 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.97609 -39.45018 -38.27775 -37.83466 -36.92088 -36.45116 -35.67033 -32.62894 -32.04757 -31.91717 -31.58887 -27.39419 -27.32107 -26.61461 -23.68375 -23.27869 -22.80638 -21.81724 -20.64948 -19.66449 -19.28136 -18.52177 -17.74490 -17.36977 -17.09673 -16.74816 -16.57430 -16.52315 -16.06892 -15.48936 -15.20636 -15.04828 -14.78585 -14.41882 -14.36868 -14.30162 -14.12638 -13.70368 -13.48836 -13.31791 -13.22111 -13.14851 -13.08937 -13.03564 -12.81830 -12.59614 -12.55671 -12.45305 -12.25444 -12.18952 -11.57121 -11.37915 -11.34374 -11.14118 -10.54012 -9.91617 -9.83005 -9.56691 -9.33854 -8.73631 -6.45549 -0.54424 0.24267 0.35195 0.40906 0.84462 1.37170 1.46340 1.49797 2.12612 2.17179 2.54680 2.66385 2.78913 3.33561 3.43508 3.51807 3.66324 3.86504 4.02820 4.24219 4.31298 4.37663 4.44338 4.47893 4.55651 4.78669 4.80835 4.84396 4.86453 4.90086 4.90782 5.06489 5.09694 5.19930 5.24121 5.35611 5.40725 5.51869 5.56122 5.64334 5.88599 5.92152 5.93439 6.04087 6.10167 6.52031 6.79239 6.81753 6.84202 8.23997 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.011876 B = 0.003180 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.103889 B = 8802.219968 C =10192.226581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.102 4.102 3 C -0.097 4.097 4 C -0.148 4.148 5 C 0.105 3.895 6 O -0.506 6.506 7 C -0.130 4.130 8 C 0.164 3.836 9 N -1.099 6.099 10 S 2.723 3.277 11 O -0.993 6.993 12 O -0.982 6.982 13 C -0.638 4.638 14 C -0.149 4.149 15 C -0.122 4.122 16 C -0.141 4.141 17 C 0.063 3.937 18 C -0.500 4.500 19 H 0.078 0.922 20 C 0.040 3.960 21 N -0.820 5.820 22 Si 0.982 3.018 23 H -0.262 1.262 24 H -0.264 1.264 25 H -0.259 1.259 26 C -0.145 4.145 27 C -0.099 4.099 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.153 0.847 32 H 0.146 0.854 33 H 0.402 0.598 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.424 0.576 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.292 0.708 41 H 0.110 0.890 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.245 16.846 2.970 17.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.102 4.102 3 C -0.115 4.115 4 C -0.166 4.166 5 C 0.059 3.941 6 O -0.318 6.318 7 C -0.132 4.132 8 C 0.039 3.961 9 N -0.861 5.861 10 S 2.815 3.185 11 O -0.984 6.984 12 O -0.972 6.972 13 C -0.727 4.727 14 C -0.170 4.170 15 C -0.141 4.141 16 C -0.161 4.161 17 C 0.060 3.940 18 C -0.529 4.529 19 H 0.097 0.903 20 C -0.176 4.176 21 N -0.445 5.445 22 Si 0.802 3.198 23 H -0.187 1.187 24 H -0.189 1.189 25 H -0.183 1.183 26 C -0.166 4.166 27 C -0.118 4.118 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.171 0.829 32 H 0.164 0.836 33 H 0.260 0.740 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.260 0.740 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.131 0.869 40 H 0.103 0.897 41 H 0.128 0.872 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.552 16.786 3.621 17.536 hybrid contribution -0.735 -1.242 -1.040 1.779 sum -4.288 15.544 2.581 16.330 Atomic orbital electron populations 1.20833 0.89304 1.03681 1.03168 1.20236 0.97606 0.92619 0.99771 1.21283 0.93324 0.98603 0.98292 1.21635 0.95073 0.97774 1.02140 1.18517 0.83213 0.92041 1.00281 1.84775 1.15848 1.96402 1.34764 1.20115 0.94306 0.93875 1.04903 1.20085 0.98005 0.94918 0.83141 1.55234 1.60649 1.54088 1.16102 1.00712 0.72943 0.72879 0.71940 1.93505 1.83725 1.87412 1.33731 1.93508 1.57219 1.85197 1.61300 1.30242 1.17919 1.22899 1.01661 1.20464 1.04028 0.98443 0.94071 1.21142 0.98520 0.95475 0.98967 1.21646 1.00640 1.00004 0.93809 1.18028 0.90979 0.91148 0.93815 1.19846 1.18747 1.19255 0.95022 0.90347 1.26717 0.94004 0.99013 0.97907 1.69800 1.19066 1.32790 1.22838 0.85250 0.78672 0.77324 0.78527 1.18684 1.18856 1.18340 1.20852 1.03097 0.95472 0.97180 1.21127 0.92564 0.99094 0.99027 0.90279 0.89914 0.91520 0.82919 0.83600 0.73974 0.89526 0.90701 0.73977 0.85131 0.85570 0.86876 0.89693 0.87190 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.01 71.24 0.71 -0.73 16 2 C -0.10 -1.78 5.88 -19.85 -0.12 -1.90 16 3 C -0.10 -1.49 9.69 22.26 0.22 -1.27 16 4 C -0.15 -2.59 9.99 22.37 0.22 -2.37 16 5 C 0.10 2.29 6.68 22.51 0.15 2.44 16 6 O -0.51 -11.26 12.84 -92.49 -1.19 -12.44 16 7 C -0.13 -3.04 5.29 -19.77 -0.10 -3.14 16 8 C 0.16 4.37 5.96 85.63 0.51 4.88 16 9 N -1.10 -30.36 5.99 -190.80 -1.14 -31.51 16 10 S 2.72 98.30 5.74 -56.49 -0.32 97.97 16 11 O -0.99 -40.51 17.27 -128.00 -2.21 -42.72 16 12 O -0.98 -38.31 16.73 -128.00 -2.14 -40.45 16 13 C -0.64 -27.55 5.94 22.22 0.13 -27.42 16 14 C -0.15 -6.31 9.53 22.46 0.21 -6.09 16 15 C -0.12 -5.40 10.02 22.22 0.22 -5.17 16 16 C -0.14 -7.14 8.70 22.73 0.20 -6.94 16 17 C 0.06 3.36 5.58 -21.29 -0.12 3.24 16 18 C -0.50 -26.35 9.06 23.47 0.21 -26.13 16 19 H 0.08 4.02 7.91 -2.91 -0.02 3.99 16 20 C 0.04 1.92 5.14 85.26 0.44 2.35 16 21 N -0.82 -40.64 10.95 21.83 0.24 -40.40 16 22 Si 0.98 36.83 29.60 68.60 2.03 38.86 16 23 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 24 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 25 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 26 C -0.14 -7.08 9.26 22.73 0.21 -6.87 16 27 C -0.10 -2.12 9.32 22.25 0.21 -1.91 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 30 H 0.07 0.89 8.08 -2.39 -0.02 0.87 16 31 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 32 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 33 H 0.40 6.18 9.06 -74.06 -0.67 5.51 16 34 H 0.09 2.42 7.61 -2.38 -0.02 2.40 16 35 H 0.07 2.03 7.95 -2.39 -0.02 2.01 16 36 H 0.42 9.80 8.64 -96.74 -0.84 8.96 16 37 H 0.13 4.84 7.59 -2.91 -0.02 4.81 16 38 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 39 H 0.11 5.87 6.16 -2.91 -0.02 5.85 16 40 H 0.29 13.03 8.30 -92.71 -0.77 12.27 16 41 H 0.11 5.23 7.60 -2.91 -0.02 5.20 16 42 H 0.13 2.72 8.00 -2.91 -0.02 2.70 16 Total: -1.00 -67.95 373.78 -1.86 -69.80 By element: Atomic # 1 Polarization: 38.36 SS G_CDS: -0.43 Total: 37.93 kcal Atomic # 6 Polarization: -80.36 SS G_CDS: 3.31 Total: -77.05 kcal Atomic # 7 Polarization: -71.00 SS G_CDS: -0.90 Total: -71.91 kcal Atomic # 8 Polarization: -90.07 SS G_CDS: -5.54 Total: -95.61 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Atomic # 16 Polarization: 98.30 SS G_CDS: -0.32 Total: 97.97 kcal Total: -67.95 -1.86 -69.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464107804.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.967 kcal (2) G-P(sol) polarization free energy of solvation -67.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds