Wall clock time and date at job start Wed Apr 1 2020 04:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31299 * 1 3 3 Si 1.86796 * 119.99813 * 2 1 4 4 H 1.48499 * 109.47295 * 275.00097 * 3 2 1 5 5 H 1.48506 * 109.47313 * 35.00110 * 3 2 1 6 6 H 1.48505 * 109.47331 * 155.00078 * 3 2 1 7 7 C 1.38979 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00061 * 185.01724 * 7 2 1 9 9 N 1.37318 * 120.00120 * 5.02371 * 7 2 1 10 10 C 1.36509 * 126.06899 * 174.98269 * 9 7 2 11 11 C 1.35684 * 107.50720 * 180.02562 * 10 9 7 12 12 N 1.40545 * 126.08649 * 180.02562 * 11 10 9 13 13 C 1.34782 * 120.00124 * 180.02562 * 12 11 10 14 14 O 1.21804 * 119.99915 * 354.83424 * 13 12 11 15 15 C 1.41798 * 119.99998 * 174.83866 * 13 12 11 16 16 C 1.38533 * 126.78618 * 99.63604 * 15 13 12 17 17 C 1.50700 * 125.89208 * 359.96132 * 16 15 13 18 18 F 1.39908 * 109.47167 * 210.00307 * 17 16 15 19 19 F 1.39894 * 109.47412 * 330.00326 * 17 16 15 20 20 N 1.32340 * 108.21371 * 179.82755 * 16 15 13 21 21 C 1.33191 * 109.81170 * 0.44271 * 20 16 15 22 22 C 1.40654 * 131.81786 * 179.74500 * 21 20 16 23 23 C 1.36282 * 119.38705 * 179.97438 * 22 21 20 24 24 C 1.40188 * 119.60822 * 0.02562 * 23 22 21 25 25 C 1.35251 * 120.12799 * 0.02562 * 24 23 22 26 26 N 1.35964 * 120.63798 * 359.95983 * 25 24 23 27 27 C 1.40674 * 107.83030 * 359.97438 * 11 10 9 28 28 N 1.30904 * 108.38654 * 0.02562 * 27 11 10 29 29 H 0.96998 * 120.00236 * 359.97438 * 1 2 3 30 30 H 1.07999 * 126.24694 * 0.05009 * 10 9 7 31 31 H 0.96996 * 119.99761 * 359.97438 * 12 11 10 32 32 H 1.09003 * 109.46825 * 90.00437 * 17 16 15 33 33 H 1.07995 * 120.31043 * 359.95380 * 22 21 20 34 34 H 1.07999 * 120.19931 * 179.97438 * 23 22 21 35 35 H 1.07999 * 119.93412 * 179.97438 * 24 23 22 36 36 H 1.08000 * 119.68352 * 180.02562 * 25 24 23 37 37 H 1.08006 * 125.80298 * 179.73470 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.3887 2.1075 -1.3947 5 1 1.5012 2.6199 0.8031 6 1 3.5934 1.4121 0.5917 7 6 2.0079 -1.2036 -0.0005 8 1 3.0848 -1.2054 0.0813 9 7 1.3253 -2.3905 -0.1052 10 6 1.8832 -3.6315 -0.2147 11 6 0.8691 -4.5294 -0.2944 12 7 1.0048 -5.9229 -0.4171 13 6 -0.0918 -6.7033 -0.4870 14 8 -1.1982 -6.2127 -0.3497 15 6 0.0424 -8.0955 -0.7204 16 6 -0.0077 -9.1042 0.2277 17 6 -0.2161 -8.9156 1.7083 18 9 0.4350 -9.9392 2.4051 19 9 0.3080 -7.6788 2.0992 20 7 0.1562 -10.2624 -0.3914 21 6 0.3205 -10.0570 -1.6970 22 6 0.5321 -10.9453 -2.7668 23 6 0.6689 -10.4511 -4.0295 24 6 0.5972 -9.0674 -4.2432 25 6 0.3941 -8.2292 -3.2013 26 7 0.2564 -8.7141 -1.9386 27 6 -0.3425 -3.8174 -0.2313 28 7 -0.0670 -2.5426 -0.1188 29 1 -0.4850 0.8400 0.0004 30 1 2.9391 -3.8575 -0.2339 31 1 1.8878 -6.3229 -0.4521 32 1 -1.2826 -8.9452 1.9317 33 1 0.5862 -12.0092 -2.5893 34 1 0.8323 -11.1212 -4.8605 35 1 0.7053 -8.6700 -5.2416 36 1 0.3397 -7.1645 -3.3742 37 1 -1.3318 -4.2487 -0.2737 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464522681.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:29 Heat of formation + Delta-G solvation = 53.138974 kcal Electronic energy + Delta-G solvation = -29529.675482 eV Core-core repulsion = 24946.838933 eV Total energy + Delta-G solvation = -4582.836549 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.093 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.98270 -46.99644 -43.22560 -39.97675 -38.68827 -37.71864 -34.34369 -34.10630 -33.20562 -31.42022 -30.37297 -29.72670 -27.92151 -26.96570 -25.19728 -24.10773 -23.33577 -21.91635 -21.09435 -20.54831 -19.55565 -18.41817 -17.71895 -17.68111 -17.40645 -17.15392 -16.59487 -16.24598 -16.01243 -15.54015 -15.46721 -15.21808 -15.01373 -14.34579 -14.15866 -13.81822 -13.66359 -13.32229 -13.16817 -12.98281 -12.97270 -12.75379 -12.31253 -12.19207 -11.73888 -11.54493 -11.51023 -11.40242 -11.31039 -11.01135 -10.60309 -10.56051 -10.27334 -9.62245 -9.26341 -9.22680 -8.88311 -8.19768 -8.12373 -6.79267 -6.61255 -4.28592 0.31204 0.67644 1.80177 2.14130 2.67005 2.96309 3.02414 3.07914 3.09841 3.26157 3.52781 3.60245 3.79964 3.87673 4.04694 4.27179 4.32514 4.42569 4.55608 4.63791 4.68379 4.83001 4.89017 4.96615 5.10835 5.24911 5.40403 5.60342 5.72258 5.89168 6.04465 6.18225 6.36318 6.58720 6.78427 6.88591 6.97841 7.16101 7.31389 7.79400 8.01170 8.17766 8.47703 8.69166 9.31107 9.59774 10.34775 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.015616 B = 0.002862 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.646367 B = 9781.199638 C =10963.396344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.047 3.953 3 Si 0.935 3.065 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.323 4.323 8 H 0.117 0.883 9 N -0.140 5.140 10 C -0.079 4.079 11 C -0.064 4.064 12 N -0.601 5.601 13 C 0.574 3.426 14 O -0.514 6.514 15 C -0.070 4.070 16 C 0.037 3.963 17 C 0.355 3.645 18 F -0.187 7.187 19 F -0.182 7.182 20 N -0.463 5.463 21 C 0.235 3.765 22 C -0.080 4.080 23 C -0.092 4.092 24 C -0.134 4.134 25 C 0.063 3.937 26 N -0.331 5.331 27 C -0.028 4.028 28 N -0.260 5.260 29 H 0.275 0.725 30 H 0.146 0.854 31 H 0.398 0.602 32 H 0.134 0.866 33 H 0.157 0.843 34 H 0.148 0.852 35 H 0.158 0.842 36 H 0.170 0.830 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.013 -18.547 -7.415 20.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.455 4.455 8 H 0.135 0.865 9 N 0.093 4.907 10 C -0.230 4.230 11 C -0.170 4.170 12 N -0.243 5.243 13 C 0.357 3.643 14 O -0.390 6.390 15 C -0.187 4.187 16 C -0.103 4.103 17 C 0.300 3.700 18 F -0.169 7.169 19 F -0.163 7.163 20 N -0.182 5.182 21 C -0.006 4.006 22 C -0.100 4.100 23 C -0.116 4.116 24 C -0.154 4.154 25 C -0.060 4.060 26 N -0.002 5.002 27 C -0.204 4.204 28 N -0.091 5.091 29 H 0.086 0.914 30 H 0.164 0.836 31 H 0.232 0.768 32 H 0.152 0.848 33 H 0.174 0.826 34 H 0.166 0.834 35 H 0.175 0.825 36 H 0.187 0.813 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.550 -17.520 -6.792 18.854 hybrid contribution 1.388 0.378 -0.473 1.514 sum 2.938 -17.142 -7.264 18.848 Atomic orbital electron populations 1.70219 1.06162 1.28088 1.34927 1.25652 0.95706 1.00317 0.95398 0.85801 0.79491 0.79955 0.78859 1.19631 1.20040 1.18736 1.19907 0.92070 0.80604 1.52930 0.86518 1.44572 1.04025 1.03634 1.38449 1.21256 0.96833 0.85628 1.19301 1.17231 0.94509 0.80912 1.24335 1.42507 1.07842 1.05238 1.68666 1.15248 0.85216 0.82855 0.80983 1.90798 1.25371 1.73146 1.49663 1.19836 1.19766 0.95022 0.84067 1.21650 1.04300 0.88750 0.95571 1.19459 0.95813 0.71962 0.82727 1.93027 1.84240 1.59569 1.80016 1.93111 1.89073 1.42788 1.91296 1.70230 1.21257 1.25091 1.01582 1.20920 1.05130 0.81638 0.92945 1.20333 1.00957 0.99664 0.89049 1.21151 0.98223 0.95338 0.96932 1.20950 1.02200 0.93319 0.98948 1.21860 1.01436 1.01530 0.81174 1.42616 1.42564 1.08898 1.06107 1.24089 0.97847 0.90900 1.07535 1.78268 0.90227 1.14982 1.25573 0.91390 0.83613 0.76838 0.84846 0.82586 0.83423 0.82470 0.81307 0.80790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.13 11.83 55.49 0.66 -20.47 16 2 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 3 Si 0.94 18.63 29.55 -169.99 -5.02 13.60 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.32 -8.41 10.24 -14.82 -0.15 -8.56 16 8 H 0.12 2.72 7.84 -52.49 -0.41 2.31 16 9 N -0.14 -3.77 3.74 -11.41 -0.04 -3.81 16 10 C -0.08 -1.83 11.49 -16.38 -0.19 -2.02 16 11 C -0.06 -1.46 6.90 -83.85 -0.58 -2.04 16 12 N -0.60 -10.98 5.45 -12.54 -0.07 -11.05 16 13 C 0.57 10.52 5.83 -14.90 -0.09 10.44 16 14 O -0.51 -11.17 14.26 5.10 0.07 -11.10 16 15 C -0.07 -1.09 6.49 -83.48 -0.54 -1.63 16 16 C 0.04 0.56 6.78 -82.26 -0.56 0.00 16 17 C 0.36 4.94 5.77 36.01 0.21 5.15 16 18 F -0.19 -2.66 17.28 2.25 0.04 -2.62 16 19 F -0.18 -2.97 15.88 2.25 0.04 -2.94 16 20 N -0.46 -6.76 11.19 -8.51 -0.10 -6.86 16 21 C 0.24 2.96 7.77 -156.06 -1.21 1.75 16 22 C -0.08 -0.67 10.10 -39.37 -0.40 -1.07 16 23 C -0.09 -0.56 10.07 -39.55 -0.40 -0.96 16 24 C -0.13 -0.91 10.00 -39.91 -0.40 -1.31 16 25 C 0.06 0.64 10.82 -16.78 -0.18 0.46 16 26 N -0.33 -4.33 2.96 -60.15 -0.18 -4.51 16 27 C -0.03 -0.73 10.85 -17.03 -0.18 -0.91 16 28 N -0.26 -7.43 10.41 30.81 0.32 -7.11 16 29 H 0.28 6.92 8.31 -40.82 -0.34 6.59 16 30 H 0.15 2.83 8.06 -52.49 -0.42 2.40 16 31 H 0.40 6.07 8.79 -40.82 -0.36 5.72 16 32 H 0.13 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.15 0.40 8.06 -52.49 -0.42 -0.02 16 35 H 0.16 0.59 8.06 -52.49 -0.42 0.17 16 36 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.18 4.46 5.93 -52.48 -0.31 4.15 16 LS Contribution 341.77 15.07 5.15 5.15 Total: -1.00 -35.14 341.77 -6.65 -41.80 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -2.75 Total: 9.54 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -4.77 Total: 0.38 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.59 Total: -53.81 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.07 Total: -11.10 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.07 Total: -5.56 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.60 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.14 -6.65 -41.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464522681.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.936 kcal (2) G-P(sol) polarization free energy of solvation -35.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds