Wall clock time and date at job start Wed Apr 1 2020 04:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31299 * 1 3 3 Si 1.86796 * 119.99813 * 2 1 4 4 H 1.48499 * 109.47295 * 275.00097 * 3 2 1 5 5 H 1.48506 * 109.47313 * 35.00110 * 3 2 1 6 6 H 1.48505 * 109.47331 * 155.00078 * 3 2 1 7 7 C 1.38979 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00061 * 185.01724 * 7 2 1 9 9 N 1.37318 * 120.00120 * 5.02371 * 7 2 1 10 10 C 1.36509 * 126.06899 * 174.98269 * 9 7 2 11 11 C 1.35684 * 107.50720 * 180.02562 * 10 9 7 12 12 N 1.40545 * 126.08649 * 180.02562 * 11 10 9 13 13 C 1.34782 * 120.00124 * 180.02562 * 12 11 10 14 14 O 1.21804 * 119.99915 * 354.83424 * 13 12 11 15 15 C 1.41798 * 119.99998 * 174.83866 * 13 12 11 16 16 C 1.38533 * 126.78618 * 99.63604 * 15 13 12 17 17 C 1.50700 * 125.89208 * 359.96132 * 16 15 13 18 18 F 1.39908 * 109.47167 * 210.00307 * 17 16 15 19 19 F 1.39894 * 109.47412 * 330.00326 * 17 16 15 20 20 N 1.32340 * 108.21371 * 179.82755 * 16 15 13 21 21 C 1.33191 * 109.81170 * 0.44271 * 20 16 15 22 22 C 1.40654 * 131.81786 * 179.74500 * 21 20 16 23 23 C 1.36282 * 119.38705 * 179.97438 * 22 21 20 24 24 C 1.40188 * 119.60822 * 0.02562 * 23 22 21 25 25 C 1.35251 * 120.12799 * 0.02562 * 24 23 22 26 26 N 1.35964 * 120.63798 * 359.95983 * 25 24 23 27 27 C 1.40674 * 107.83030 * 359.97438 * 11 10 9 28 28 N 1.30904 * 108.38654 * 0.02562 * 27 11 10 29 29 H 0.96998 * 120.00236 * 359.97438 * 1 2 3 30 30 H 1.07999 * 126.24694 * 0.05009 * 10 9 7 31 31 H 0.96996 * 119.99761 * 359.97438 * 12 11 10 32 32 H 1.09003 * 109.46825 * 90.00437 * 17 16 15 33 33 H 1.07995 * 120.31043 * 359.95380 * 22 21 20 34 34 H 1.07999 * 120.19931 * 179.97438 * 23 22 21 35 35 H 1.07999 * 119.93412 * 179.97438 * 24 23 22 36 36 H 1.08000 * 119.68352 * 180.02562 * 25 24 23 37 37 H 1.08006 * 125.80298 * 179.73470 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.3887 2.1075 -1.3947 5 1 1.5012 2.6199 0.8031 6 1 3.5934 1.4121 0.5917 7 6 2.0079 -1.2036 -0.0005 8 1 3.0848 -1.2054 0.0813 9 7 1.3253 -2.3905 -0.1052 10 6 1.8832 -3.6315 -0.2147 11 6 0.8691 -4.5294 -0.2944 12 7 1.0048 -5.9229 -0.4171 13 6 -0.0918 -6.7033 -0.4870 14 8 -1.1982 -6.2127 -0.3497 15 6 0.0424 -8.0955 -0.7204 16 6 -0.0077 -9.1042 0.2277 17 6 -0.2161 -8.9156 1.7083 18 9 0.4350 -9.9392 2.4051 19 9 0.3080 -7.6788 2.0992 20 7 0.1562 -10.2624 -0.3914 21 6 0.3205 -10.0570 -1.6970 22 6 0.5321 -10.9453 -2.7668 23 6 0.6689 -10.4511 -4.0295 24 6 0.5972 -9.0674 -4.2432 25 6 0.3941 -8.2292 -3.2013 26 7 0.2564 -8.7141 -1.9386 27 6 -0.3425 -3.8174 -0.2313 28 7 -0.0670 -2.5426 -0.1188 29 1 -0.4850 0.8400 0.0004 30 1 2.9391 -3.8575 -0.2339 31 1 1.8878 -6.3229 -0.4521 32 1 -1.2826 -8.9452 1.9317 33 1 0.5862 -12.0092 -2.5893 34 1 0.8323 -11.1212 -4.8605 35 1 0.7053 -8.6700 -5.2416 36 1 0.3397 -7.1645 -3.3742 37 1 -1.3318 -4.2487 -0.2737 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464522681.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:28 Heat of formation + Delta-G solvation = 29.801958 kcal Electronic energy + Delta-G solvation = -29530.687451 eV Core-core repulsion = 24946.838933 eV Total energy + Delta-G solvation = -4583.848518 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.093 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.14174 -48.16302 -44.16586 -41.76522 -40.28772 -38.57855 -36.04650 -35.16080 -34.81914 -32.45668 -32.18776 -30.81036 -29.54346 -28.10249 -26.88529 -25.29295 -24.16566 -23.13089 -22.76962 -21.88841 -21.33128 -19.79060 -19.10914 -18.72049 -18.66722 -18.25780 -17.51227 -17.48648 -17.38354 -17.11146 -16.69311 -16.35703 -15.97364 -15.83258 -15.55236 -15.25853 -14.99318 -14.95628 -14.82846 -14.47360 -14.11619 -13.52063 -13.39155 -13.36318 -13.17894 -12.98760 -12.91118 -12.83509 -12.53411 -12.17136 -12.07408 -11.96641 -11.66842 -11.17338 -11.06035 -10.85656 -10.15694 -10.13528 -9.09898 -8.62656 -8.49440 -6.27215 -0.44550 -0.16168 0.67524 1.18091 1.25255 1.39940 1.47518 1.58289 1.80038 2.01952 2.22670 2.28666 2.38272 2.44147 2.82949 2.90650 3.03316 3.06391 3.51105 3.59468 3.65062 3.79810 3.90201 4.03170 4.10046 4.38525 4.47521 4.54100 4.66968 4.93780 4.97380 4.99096 5.02151 5.13034 5.22403 5.30973 5.41314 5.74781 5.92008 6.23031 6.33501 6.47871 6.68471 7.07646 7.41592 7.62587 8.50017 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.015616 B = 0.002862 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.646367 B = 9781.199638 C =10963.396344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C -0.005 4.005 3 Si 1.020 2.980 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.244 1.244 7 C -0.354 4.354 8 H 0.141 0.859 9 N -0.164 5.164 10 C -0.075 4.075 11 C -0.048 4.048 12 N -0.595 5.595 13 C 0.590 3.410 14 O -0.554 6.554 15 C -0.111 4.111 16 C 0.036 3.964 17 C 0.350 3.650 18 F -0.190 7.190 19 F -0.199 7.199 20 N -0.490 5.490 21 C 0.231 3.769 22 C -0.093 4.093 23 C -0.063 4.063 24 C -0.103 4.103 25 C 0.023 3.977 26 N -0.329 5.329 27 C -0.051 4.051 28 N -0.307 5.307 29 H 0.277 0.723 30 H 0.186 0.814 31 H 0.415 0.585 32 H 0.161 0.839 33 H 0.182 0.818 34 H 0.198 0.802 35 H 0.197 0.803 36 H 0.163 0.837 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.300 -20.517 -9.940 23.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.217 4.217 3 Si 0.838 3.162 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.167 1.167 7 C -0.485 4.485 8 H 0.159 0.841 9 N 0.068 4.932 10 C -0.226 4.226 11 C -0.154 4.154 12 N -0.238 5.238 13 C 0.376 3.624 14 O -0.431 6.431 15 C -0.228 4.228 16 C -0.105 4.105 17 C 0.296 3.704 18 F -0.171 7.171 19 F -0.181 7.181 20 N -0.209 5.209 21 C -0.010 4.010 22 C -0.113 4.113 23 C -0.087 4.087 24 C -0.123 4.123 25 C -0.100 4.100 26 N 0.001 4.999 27 C -0.227 4.227 28 N -0.139 5.139 29 H 0.087 0.913 30 H 0.203 0.797 31 H 0.251 0.749 32 H 0.178 0.822 33 H 0.199 0.801 34 H 0.215 0.785 35 H 0.214 0.786 36 H 0.180 0.820 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.874 -19.544 -9.334 22.002 hybrid contribution 0.689 0.690 0.084 0.979 sum 4.563 -18.853 -9.249 21.490 Atomic orbital electron populations 1.70393 1.08428 1.29225 1.36881 1.26881 0.96462 1.04308 0.94027 0.84569 0.78486 0.74110 0.78998 1.18986 1.20175 1.16666 1.20646 0.93331 0.80914 1.53569 0.84144 1.44853 1.03616 1.05044 1.39685 1.21936 0.98663 0.84501 1.17480 1.17257 0.93219 0.82875 1.22079 1.42423 1.09004 1.03468 1.68907 1.15504 0.84256 0.83817 0.78846 1.90767 1.26921 1.74450 1.50982 1.19201 1.24371 0.93375 0.85836 1.21728 1.04000 0.88963 0.95763 1.19802 0.96958 0.71059 0.82600 1.93011 1.84469 1.59545 1.80045 1.93065 1.89447 1.44072 1.91485 1.70211 1.23072 1.24793 1.02854 1.21648 1.04085 0.81984 0.93294 1.20843 1.01296 1.00406 0.88728 1.21777 0.94221 0.95476 0.97243 1.21574 0.97827 0.93459 0.99413 1.22237 1.04393 1.02327 0.81073 1.42616 1.42254 1.08929 1.06121 1.24116 0.98744 0.91013 1.08782 1.78166 0.92054 1.16353 1.27302 0.91281 0.79656 0.74920 0.82169 0.80115 0.78517 0.78562 0.81998 0.81557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.03 11.83 21.66 0.26 -46.77 16 2 C 0.00 -0.24 5.50 84.95 0.47 0.22 16 3 Si 1.02 38.15 29.55 68.60 2.03 40.18 16 4 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 5 H -0.28 -10.28 7.11 99.48 0.71 -9.57 16 6 H -0.24 -8.25 7.11 99.48 0.71 -7.54 16 7 C -0.35 -18.57 10.24 84.01 0.86 -17.71 16 8 H 0.14 6.40 7.84 -2.91 -0.02 6.38 16 9 N -0.16 -9.04 3.74 -190.01 -0.71 -9.75 16 10 C -0.08 -3.49 11.49 83.37 0.96 -2.53 16 11 C -0.05 -2.25 6.90 37.75 0.26 -1.98 16 12 N -0.59 -22.13 5.45 -311.76 -1.70 -23.83 16 13 C 0.59 22.47 5.83 85.12 0.50 22.96 16 14 O -0.55 -25.39 14.26 -4.68 -0.07 -25.46 16 15 C -0.11 -3.53 6.49 39.08 0.25 -3.28 16 16 C 0.04 1.11 6.78 42.55 0.29 1.40 16 17 C 0.35 10.00 5.77 71.24 0.41 10.41 16 18 F -0.19 -5.44 17.28 44.97 0.78 -4.66 16 19 F -0.20 -6.78 15.88 44.97 0.71 -6.06 16 20 N -0.49 -14.12 11.19 -180.83 -2.02 -16.15 16 21 C 0.23 5.45 7.77 134.00 1.04 6.50 16 22 C -0.09 -1.21 10.10 22.40 0.23 -0.98 16 23 C -0.06 -0.41 10.07 22.29 0.22 -0.19 16 24 C -0.10 -0.93 10.00 22.05 0.22 -0.71 16 25 C 0.02 0.42 10.82 83.36 0.90 1.32 16 26 N -0.33 -8.39 2.96 -344.21 -1.02 -9.40 16 27 C -0.05 -2.80 10.85 85.43 0.93 -1.87 16 28 N -0.31 -18.44 10.41 -56.45 -0.59 -19.03 16 29 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 30 H 0.19 6.85 8.06 -2.91 -0.02 6.83 16 31 H 0.41 12.60 8.79 -92.71 -0.81 11.78 16 32 H 0.16 3.60 8.14 -2.39 -0.02 3.58 16 33 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 34 H 0.20 -0.50 8.06 -2.91 -0.02 -0.52 16 35 H 0.20 0.28 8.06 -2.91 -0.02 0.26 16 36 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 37 H 0.17 9.17 5.93 -2.91 -0.02 9.15 16 Total: -1.00 -83.16 341.77 5.57 -77.59 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: 0.36 Total: 29.80 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 7.54 Total: 13.55 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -5.78 Total: -124.93 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.07 Total: -25.46 kcal Atomic # 9 Polarization: -12.22 SS G_CDS: 1.49 Total: -10.73 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -83.16 5.57 -77.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464522681.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.391 kcal (2) G-P(sol) polarization free energy of solvation -83.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds